Wall clock time and date at job start Wed Apr 1 2020 00:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 119.99781 * 2 1 4 4 N 1.34771 * 119.99622 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99622 * 180.02562 * 4 2 1 6 6 C 1.50703 * 109.47064 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.48112 * 127.03304 * 359.69098 * 12 10 9 14 14 C 1.54604 * 103.42126 * 219.28131 * 13 12 10 15 15 H 1.08992 * 110.98889 * 204.37408 * 14 13 12 16 16 C 1.52999 * 110.57356 * 81.16654 * 14 13 12 17 17 C 1.54622 * 102.90884 * 322.86851 * 14 13 12 18 18 H 1.08996 * 110.32578 * 262.80660 * 17 14 13 19 19 C 1.53007 * 110.32530 * 140.58943 * 17 14 13 20 20 N 1.46494 * 109.47226 * 177.92332 * 19 17 14 21 21 C 1.36935 * 120.00230 * 180.02562 * 20 19 17 22 22 H 1.07994 * 119.99764 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00237 * 180.02562 * 21 20 19 24 24 N 1.31612 * 119.99970 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99700 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47007 * 90.00705 * 25 23 21 27 27 H 1.48506 * 109.46764 * 210.00196 * 25 23 21 28 28 H 1.48494 * 109.47224 * 330.00269 * 25 23 21 29 29 C 1.47487 * 127.02821 * 179.97438 * 12 10 9 30 30 H 1.09002 * 109.47498 * 270.00444 * 1 2 3 31 31 H 1.08999 * 109.47119 * 30.00132 * 1 2 3 32 32 H 1.08993 * 109.47391 * 150.00219 * 1 2 3 33 33 H 0.96996 * 120.00772 * 0.02562 * 4 2 1 34 34 H 1.09002 * 109.47068 * 60.00271 * 5 4 2 35 35 H 1.09001 * 109.47372 * 300.00183 * 5 4 2 36 36 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 38 38 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 39 39 H 1.09002 * 110.66412 * 337.76416 * 13 12 10 40 40 H 1.09002 * 110.66214 * 100.88169 * 13 12 10 41 41 H 1.09002 * 109.47659 * 306.58895 * 16 14 13 42 42 H 1.09004 * 109.46978 * 66.59266 * 16 14 13 43 43 H 1.09001 * 109.46920 * 186.58722 * 16 14 13 44 44 H 1.08998 * 109.47217 * 297.92410 * 19 17 14 45 45 H 1.09004 * 109.46826 * 57.92137 * 19 17 14 46 46 H 0.97001 * 120.00018 * 359.97438 * 20 19 17 47 47 H 0.97006 * 119.99838 * 179.97438 * 24 23 21 48 48 H 1.09004 * 109.91183 * 273.87751 * 29 12 10 49 49 H 1.09001 * 109.91498 * 34.97056 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1482 -2.5880 0.0010 7 8 3.3601 -3.5098 0.0000 8 7 5.4733 -2.8343 0.0019 9 6 5.9616 -4.2155 0.0013 10 6 7.4686 -4.2155 0.0020 11 8 8.0749 -3.1652 0.0034 12 7 8.1424 -5.3828 0.0020 13 6 7.5645 -6.7465 0.0078 14 6 8.5002 -7.5288 0.9580 15 1 8.4742 -8.5963 0.7399 16 6 8.1251 -7.2667 2.4180 17 6 9.8922 -6.9378 0.6357 18 1 10.4208 -7.5775 -0.0709 19 6 10.7093 -6.7723 1.9187 20 7 12.0404 -6.2584 1.5871 21 6 12.9535 -6.0298 2.5817 22 1 12.6921 -6.2279 3.6106 23 6 14.2147 -5.5424 2.2674 24 7 15.0924 -5.3231 3.2233 25 14 14.6665 -5.1991 0.4877 26 1 14.3128 -3.7972 0.1489 27 1 16.1258 -5.4006 0.2998 28 1 13.9203 -6.1264 -0.4002 29 6 9.6062 -5.5633 0.0022 30 1 -0.3634 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6959 -2.0072 0.0005 34 1 4.0088 -0.6532 0.8911 35 1 4.0096 -0.6535 -0.8888 36 1 6.1036 -2.0970 0.0024 37 1 5.5990 -4.7287 -0.8894 38 1 5.5974 -4.7300 0.8905 39 1 6.5468 -6.7313 0.3980 40 1 7.5874 -7.1782 -0.9928 41 1 8.1020 -6.1923 2.6000 42 1 7.1421 -7.6912 2.6223 43 1 8.8640 -7.7302 3.0717 44 1 10.2043 -6.0712 2.5832 45 1 10.8058 -7.7380 2.4151 46 1 12.2754 -6.0809 0.6629 47 1 15.9738 -4.9829 3.0037 48 1 9.9832 -5.5400 -1.0204 49 1 10.0775 -4.7753 0.5896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754818607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:44 Heat of formation + Delta-G solvation = -88.867565 kcal Electronic energy + Delta-G solvation = -29326.237068 eV Core-core repulsion = 25095.880879 eV Total energy + Delta-G solvation = -4230.356189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.86411 -40.29821 -39.45592 -38.27969 -35.13107 -34.92987 -34.74187 -32.94922 -31.42451 -31.11166 -30.00214 -28.83096 -27.22836 -26.43769 -25.16317 -23.07264 -21.69670 -21.16437 -21.04913 -19.83518 -19.37600 -18.41948 -17.52674 -17.21410 -17.05273 -16.79480 -16.40464 -16.29975 -15.87378 -15.56600 -14.98592 -14.87843 -14.67856 -14.14732 -14.05241 -13.81343 -13.63341 -13.51475 -13.31311 -13.06521 -13.02737 -12.86040 -12.66314 -12.56999 -12.42553 -12.08572 -12.01887 -11.83420 -11.35750 -10.97078 -10.69442 -10.65119 -10.56542 -10.42217 -10.39486 -10.16745 -10.07536 -9.76211 -9.61067 -9.60638 -8.93868 -8.83963 -7.26372 -5.78696 -3.14800 1.99896 2.14534 2.19143 2.31828 2.73019 3.07591 3.35211 3.38967 3.44404 4.02769 4.13600 4.34669 4.40647 4.57270 4.60911 4.72599 4.75988 4.78557 4.89521 4.91542 4.91730 4.95862 5.10297 5.17712 5.27059 5.36293 5.39892 5.51056 5.57783 5.62469 5.67704 5.75069 5.80335 5.82597 5.98294 5.99486 6.12991 6.15012 6.29731 6.56334 6.69194 6.90695 7.01528 7.28172 7.57856 7.74012 7.83227 7.96458 8.39850 9.18433 9.90779 10.09533 11.39612 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.001971 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.416524 B =14200.733069 C =15119.015466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.547 6.547 4 N -0.720 5.720 5 C 0.099 3.901 6 C 0.515 3.485 7 O -0.541 6.541 8 N -0.711 5.711 9 C 0.106 3.894 10 C 0.524 3.476 11 O -0.534 6.534 12 N -0.611 5.611 13 C 0.098 3.902 14 C -0.097 4.097 15 H 0.092 0.908 16 C -0.147 4.147 17 C -0.109 4.109 18 H 0.086 0.914 19 C 0.166 3.834 20 N -0.757 5.757 21 C -0.245 4.245 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.278 1.278 29 C 0.108 3.892 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.413 0.587 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.417 0.583 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.360 0.640 47 H 0.260 0.740 48 H 0.065 0.935 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.610 0.098 -9.228 31.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.424 6.424 4 N -0.377 5.377 5 C -0.028 4.028 6 C 0.300 3.700 7 O -0.418 6.418 8 N -0.366 5.366 9 C -0.021 4.021 10 C 0.311 3.689 11 O -0.411 6.411 12 N -0.345 5.345 13 C -0.025 4.025 14 C -0.117 4.117 15 H 0.110 0.890 16 C -0.204 4.204 17 C -0.128 4.128 18 H 0.105 0.895 19 C 0.039 3.961 20 N -0.403 5.403 21 C -0.375 4.375 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.581 5.581 25 Si 0.714 3.286 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.204 1.204 29 C -0.013 4.013 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.256 0.744 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.192 0.808 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -29.330 0.863 -8.997 30.691 hybrid contribution 0.743 0.027 -1.260 1.463 sum -28.587 0.890 -10.257 30.384 Atomic orbital electron populations 1.21864 0.90979 1.05113 1.05068 1.20868 0.90839 0.82967 0.75347 1.90755 1.70786 1.31379 1.49489 1.45826 1.05801 1.10078 1.75957 1.21032 0.82587 0.93752 1.05468 1.20476 0.82221 0.91330 0.75942 1.90705 1.55151 1.45904 1.50066 1.45609 1.07273 1.08931 1.74835 1.21050 0.91323 0.84777 1.04959 1.19981 0.89134 0.82857 0.76898 1.90752 1.69700 1.30331 1.50347 1.48690 1.08417 1.05312 1.72080 1.22689 0.97938 0.81701 1.00134 1.22191 0.93977 0.99727 0.95767 0.89017 1.21856 1.01145 1.02285 0.95103 1.22416 0.95757 0.95166 0.99482 0.89517 1.20783 0.85318 0.97216 0.92792 1.42749 1.11418 1.80161 1.05927 1.19023 0.92326 1.36617 0.89553 0.89247 1.24671 0.96319 1.01208 0.96837 1.69699 1.06312 1.51310 1.30746 0.86567 0.77577 0.78321 0.86171 1.20963 1.21696 1.20393 1.22252 0.79007 0.98925 1.01162 0.88588 0.88639 0.89946 0.74925 0.87877 0.87940 0.74430 0.88207 0.88057 0.89934 0.90418 0.92396 0.92911 0.91143 0.94934 0.95104 0.80760 0.93036 0.91663 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 10.30 36.01 0.37 -0.32 16 2 C 0.51 4.15 7.94 -10.99 -0.09 4.06 16 3 O -0.55 -6.81 17.10 5.56 0.10 -6.71 16 4 N -0.72 -5.12 5.53 -61.47 -0.34 -5.46 16 5 C 0.10 0.72 6.15 -5.19 -0.03 0.69 16 6 C 0.51 4.40 7.90 -10.98 -0.09 4.31 16 7 O -0.54 -5.79 15.67 5.56 0.09 -5.71 16 8 N -0.71 -6.12 5.53 -61.47 -0.34 -6.46 16 9 C 0.11 0.93 5.09 -5.19 -0.03 0.90 16 10 C 0.52 6.31 7.96 -10.98 -0.09 6.22 16 11 O -0.53 -8.46 16.00 5.56 0.09 -8.37 16 12 N -0.61 -6.98 3.19 -169.96 -0.54 -7.52 16 13 C 0.10 0.79 6.37 -2.31 -0.01 0.77 16 14 C -0.10 -0.92 3.60 -88.92 -0.32 -1.24 16 15 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 16 C -0.15 -1.48 7.97 37.16 0.30 -1.19 16 17 C -0.11 -1.43 3.00 -89.23 -0.27 -1.70 16 18 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 19 C 0.17 2.96 4.18 -4.04 -0.02 2.94 16 20 N -0.76 -17.39 5.14 -59.91 -0.31 -17.69 16 21 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 25 Si 0.88 22.07 27.74 -169.99 -4.71 17.36 16 26 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.43 6.52 56.52 0.37 -6.07 16 29 C 0.11 1.52 6.31 -2.97 -0.02 1.50 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.41 2.51 7.44 -40.82 -0.30 2.21 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.42 3.59 7.44 -40.82 -0.30 3.29 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.81 7.90 -51.93 -0.41 0.40 16 39 H 0.08 0.50 7.13 -51.93 -0.37 0.13 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.68 7.61 -51.93 -0.40 0.29 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.79 6.67 -51.93 -0.35 0.45 16 44 H 0.03 0.61 6.85 -51.93 -0.36 0.26 16 45 H 0.03 0.56 7.55 -51.93 -0.39 0.17 16 46 H 0.36 8.07 5.37 -40.82 -0.22 7.85 16 47 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.09 1.63 7.49 -51.93 -0.39 1.24 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -37.44 400.71 -7.43 -44.87 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.73 Total: 8.22 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.54 Total: 9.98 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.75 Total: -65.67 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.27 Total: -20.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.44 -7.43 -44.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754818607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.000 kcal (2) G-P(sol) polarization free energy of solvation -37.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds