Wall clock time and date at job start Tue Mar 31 2020 23:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00008 * 2 1 4 4 H 1.48500 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47032 * 299.99951 * 3 2 1 6 6 H 1.48506 * 109.46985 * 59.99305 * 3 2 1 7 7 C 1.38802 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00263 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99820 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47412 * 179.97438 * 12 11 10 14 14 C 1.47190 * 110.99993 * 52.88695 * 13 12 11 15 15 C 1.52986 * 108.72648 * 54.36756 * 14 13 12 16 16 N 1.46002 * 110.04426 * 50.29714 * 15 14 13 17 17 C 1.33720 * 122.92540 * 341.83308 * 16 15 14 18 18 O 1.21283 * 118.62113 * 181.66816 * 17 16 15 19 19 C 1.46903 * 111.00131 * 175.77460 * 13 12 11 20 20 H 1.09006 * 109.29906 * 166.83057 * 19 13 12 21 21 C 1.52999 * 109.38567 * 47.09405 * 19 13 12 22 22 C 1.53009 * 109.47251 * 62.07479 * 21 19 13 23 23 C 1.53000 * 109.46780 * 185.94366 * 22 21 19 24 24 C 1.53001 * 109.46534 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47032 * 60.00337 * 24 23 22 26 26 C 1.52995 * 109.47209 * 299.99626 * 25 24 23 27 27 C 1.52995 * 109.47056 * 60.00041 * 26 25 24 28 28 H 0.96995 * 120.00268 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46808 * 60.00242 * 10 9 7 30 30 H 1.08998 * 109.47452 * 300.00131 * 10 9 7 31 31 H 1.09001 * 109.47105 * 60.00424 * 11 10 9 32 32 H 1.09002 * 109.47541 * 300.00195 * 11 10 9 33 33 H 1.09001 * 109.46935 * 60.00033 * 12 11 10 34 34 H 1.08998 * 109.47111 * 300.00052 * 12 11 10 35 35 H 1.08997 * 109.59445 * 294.59662 * 14 13 12 36 36 H 1.08998 * 109.72492 * 174.21602 * 14 13 12 37 37 H 1.08998 * 109.37493 * 290.11430 * 15 14 13 38 38 H 1.09003 * 109.27947 * 170.41535 * 15 14 13 39 39 H 0.97005 * 118.53979 * 161.86276 * 16 15 14 40 40 H 1.09000 * 109.46785 * 302.07606 * 21 19 13 41 41 H 1.08996 * 109.47310 * 182.08041 * 21 19 13 42 42 H 1.08996 * 109.47114 * 305.94683 * 22 21 19 43 43 H 1.08996 * 109.47556 * 300.00046 * 23 22 21 44 44 H 1.08997 * 109.47145 * 60.00850 * 23 22 21 45 45 H 1.08995 * 109.47686 * 299.99942 * 24 23 22 46 46 H 1.09006 * 109.46902 * 180.02562 * 24 23 22 47 47 H 1.09004 * 109.46837 * 179.97438 * 25 24 23 48 48 H 1.08996 * 109.47175 * 59.99866 * 25 24 23 49 49 H 1.08996 * 109.47249 * 300.00196 * 26 25 24 50 50 H 1.08998 * 109.47379 * 180.02562 * 26 25 24 51 51 H 1.09006 * 109.47140 * 180.02562 * 27 26 25 52 52 H 1.09004 * 109.47557 * 60.00123 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9795 -5.3242 -0.0001 12 6 3.1515 -6.3076 0.0005 13 7 2.6365 -7.6834 0.0005 14 6 1.6755 -7.8868 -1.0956 15 6 2.3400 -7.4821 -2.4129 16 7 3.6426 -8.1301 -2.5360 17 6 4.2957 -8.6532 -1.4930 18 8 5.3879 -9.1464 -1.6794 19 6 3.7328 -8.6560 -0.0999 20 1 3.3545 -9.6508 0.1355 21 6 4.8349 -8.2835 0.8939 22 6 4.2804 -8.3487 2.3185 23 6 5.3353 -7.8348 3.3003 24 6 4.7805 -7.8995 4.7247 25 6 4.4262 -9.3476 5.0687 26 6 3.3714 -9.8616 4.0869 27 6 3.9261 -9.7969 2.6625 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8906 30 1 3.1246 -3.7313 -0.8894 31 1 1.3712 -5.4840 -0.8904 32 1 1.3706 -5.4847 0.8896 33 1 3.7595 -6.1477 0.8910 34 1 3.7608 -6.1474 -0.8890 35 1 0.7927 -7.2701 -0.9270 36 1 1.3850 -8.9364 -1.1401 37 1 2.4708 -6.4002 -2.4345 38 1 1.7047 -7.7862 -3.2448 39 1 4.0527 -8.1832 -3.4135 40 1 5.1847 -7.2722 0.6862 41 1 5.6651 -8.9826 0.7947 42 1 3.3861 -7.7297 2.3890 43 1 6.2296 -8.4538 3.2298 44 1 5.5873 -6.8030 3.0555 45 1 3.8864 -7.2801 4.7950 46 1 5.5319 -7.5329 5.4242 47 1 4.0314 -9.3937 6.0837 48 1 5.3204 -9.9669 4.9985 49 1 2.4773 -9.2422 4.1571 50 1 3.1187 -10.8931 4.3322 51 1 3.1744 -10.1626 1.9629 52 1 4.8203 -10.4162 2.5922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421035753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:22 Heat of formation + Delta-G solvation = -65.767222 kcal Electronic energy + Delta-G solvation = -28697.313665 eV Core-core repulsion = 25014.252396 eV Total energy + Delta-G solvation = -3683.061268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24904 -38.75412 -37.76559 -35.13493 -33.69842 -32.46042 -31.97873 -30.85360 -29.83382 -27.67405 -26.30505 -25.54072 -23.68729 -23.24679 -22.69875 -21.09098 -20.99111 -19.76777 -18.74332 -17.64455 -17.36070 -16.94969 -16.05260 -15.84812 -15.32055 -15.21501 -14.82787 -14.61912 -14.33758 -14.24148 -14.02649 -13.92660 -13.82771 -13.38978 -13.21543 -12.85146 -12.52214 -12.22360 -12.12731 -12.10267 -11.88868 -11.79016 -11.59751 -11.40215 -11.20658 -11.12822 -11.06769 -10.99067 -10.79453 -10.65567 -10.57272 -10.41562 -10.31362 -10.09115 -9.99603 -9.56589 -9.29994 -9.09238 -8.42051 -8.34113 -6.56086 -6.25908 -3.96101 2.41243 2.95296 3.18957 3.20064 3.28051 3.48014 3.76683 4.19707 4.24752 4.44264 4.59304 4.63586 4.71305 4.76483 4.80630 4.98443 5.03406 5.10571 5.14945 5.23369 5.24386 5.27284 5.33823 5.37385 5.44290 5.44595 5.45668 5.57461 5.58655 5.60381 5.65723 5.73835 5.81745 5.85564 5.87550 5.93815 6.02931 6.05838 6.10163 6.16367 6.19571 6.22938 6.29373 6.44817 6.50016 6.50163 6.66948 6.77157 6.83337 7.06498 7.58415 7.98259 8.34216 9.21019 10.82260 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.002960 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.068798 B = 9458.116963 C =11118.079550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.130 6.130 10 C -0.113 4.113 11 C -0.097 4.097 12 C 0.046 3.954 13 N -0.514 5.514 14 C 0.032 3.968 15 C 0.067 3.933 16 N -0.721 5.721 17 C 0.490 3.510 18 O -0.553 6.553 19 C 0.073 3.927 20 H 0.116 0.884 21 C -0.102 4.102 22 C -0.081 4.081 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.112 4.112 28 H 0.267 0.733 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.397 0.603 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.056 0.944 51 H 0.062 0.938 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 -20.936 2.699 21.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.743 3.257 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.098 5.902 10 C -0.262 4.262 11 C -0.135 4.135 12 C -0.082 4.082 13 N -0.237 5.237 14 C -0.096 4.096 15 C -0.059 4.059 16 N -0.374 5.374 17 C 0.275 3.725 18 O -0.430 6.430 19 C -0.039 4.039 20 H 0.134 0.866 21 C -0.140 4.140 22 C -0.100 4.100 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.149 4.149 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.233 0.767 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.081 0.919 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.554 -21.330 3.290 22.057 hybrid contribution 2.352 1.525 -1.357 3.114 sum 6.906 -19.805 1.933 21.064 Atomic orbital electron populations 1.70022 1.05897 1.27234 1.47355 1.25005 0.95069 0.99072 0.94592 0.86133 0.79693 0.81919 0.77911 1.19608 1.20586 1.20530 1.22729 0.94533 0.90778 1.58368 0.90956 1.84587 1.09369 0.99415 1.96851 1.23220 1.02938 0.97284 1.02767 1.21383 0.96792 0.92157 1.03212 1.22441 0.97844 0.86498 1.01452 1.62692 1.13705 1.03818 1.43528 1.22645 0.96852 1.03060 0.87093 1.22217 0.84146 0.98802 1.00702 1.45648 1.21426 1.59364 1.10925 1.21348 0.85258 0.77223 0.88647 1.90728 1.20733 1.46045 1.85514 1.22005 0.92540 0.99080 0.90249 0.86631 1.21668 0.96248 1.02701 0.93431 1.21122 0.99315 0.97119 0.92424 1.21583 0.98113 1.01024 0.94557 1.21518 1.01036 0.96678 0.96455 1.21528 0.98943 0.96512 0.98649 1.21511 0.98554 1.00611 0.94917 1.21585 1.00557 0.96423 0.96326 0.92353 0.92069 0.92496 0.91505 0.90466 0.89661 0.94585 0.87376 0.89950 0.90353 0.89984 0.76712 0.91229 0.90328 0.89225 0.92313 0.92024 0.91704 0.92344 0.92418 0.92373 0.91733 0.92494 0.91909 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.52 13.22 55.49 0.73 -24.78 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.50 9.50 30.94 0.29 -14.21 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.13 -3.27 21.44 -107.50 -2.30 -5.58 16 10 C -0.11 -2.14 5.67 37.16 0.21 -1.93 16 11 C -0.10 -1.39 4.56 -26.73 -0.12 -1.52 16 12 C 0.05 0.56 3.27 -3.83 -0.01 0.55 16 13 N -0.51 -5.21 4.30 -228.07 -0.98 -6.19 16 14 C 0.03 0.28 5.43 -3.67 -0.02 0.26 16 15 C 0.07 0.58 6.34 -4.32 -0.03 0.55 16 16 N -0.72 -7.34 5.32 -61.07 -0.33 -7.67 16 17 C 0.49 6.02 6.67 -11.68 -0.08 5.94 16 18 O -0.55 -8.71 17.02 5.55 0.09 -8.61 16 19 C 0.07 0.75 2.27 -69.08 -0.16 0.60 16 20 H 0.12 1.10 6.48 -51.93 -0.34 0.76 16 21 C -0.10 -1.07 3.39 -26.73 -0.09 -1.16 16 22 C -0.08 -0.76 1.81 -90.62 -0.16 -0.93 16 23 C -0.12 -1.07 5.20 -26.73 -0.14 -1.21 16 24 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 25 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 26 C -0.12 -0.97 5.92 -26.74 -0.16 -1.12 16 27 C -0.11 -0.95 4.98 -26.73 -0.13 -1.08 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.07 0.92 5.63 -51.93 -0.29 0.63 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.06 5.78 -51.93 -0.30 0.76 16 34 H 0.04 0.47 6.12 -51.93 -0.32 0.15 16 35 H 0.11 0.94 6.56 -51.93 -0.34 0.60 16 36 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.08 0.79 6.16 -51.93 -0.32 0.47 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 3.73 8.84 -40.82 -0.36 3.37 16 40 H 0.07 0.80 6.27 -51.93 -0.33 0.47 16 41 H 0.08 0.88 7.74 -51.93 -0.40 0.48 16 42 H 0.09 0.96 6.91 -51.93 -0.36 0.60 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.06 0.53 6.55 -51.93 -0.34 0.19 16 52 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -31.76 397.61 -11.98 -43.73 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -9.15 Total: 2.53 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -1.01 Total: -15.68 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.57 Total: -38.64 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.30 Total: -5.58 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.76 -11.98 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421035753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.033 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds