Wall clock time and date at job start Tue Mar 31 2020 23:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00008 * 2 1 4 4 H 1.48500 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47032 * 299.99951 * 3 2 1 6 6 H 1.48506 * 109.46985 * 59.99305 * 3 2 1 7 7 C 1.38802 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00263 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99820 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47412 * 179.97438 * 12 11 10 14 14 C 1.47190 * 110.99993 * 52.88695 * 13 12 11 15 15 C 1.52986 * 108.72648 * 54.36756 * 14 13 12 16 16 N 1.46002 * 110.04426 * 50.29714 * 15 14 13 17 17 C 1.33720 * 122.92540 * 341.83308 * 16 15 14 18 18 O 1.21283 * 118.62113 * 181.66816 * 17 16 15 19 19 C 1.46903 * 111.00131 * 175.77460 * 13 12 11 20 20 H 1.09006 * 109.29906 * 166.83057 * 19 13 12 21 21 C 1.52999 * 109.38567 * 47.09405 * 19 13 12 22 22 C 1.53009 * 109.47251 * 62.07479 * 21 19 13 23 23 C 1.53000 * 109.46780 * 185.94366 * 22 21 19 24 24 C 1.53001 * 109.46534 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47032 * 60.00337 * 24 23 22 26 26 C 1.52995 * 109.47209 * 299.99626 * 25 24 23 27 27 C 1.52995 * 109.47056 * 60.00041 * 26 25 24 28 28 H 0.96995 * 120.00268 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46808 * 60.00242 * 10 9 7 30 30 H 1.08998 * 109.47452 * 300.00131 * 10 9 7 31 31 H 1.09001 * 109.47105 * 60.00424 * 11 10 9 32 32 H 1.09002 * 109.47541 * 300.00195 * 11 10 9 33 33 H 1.09001 * 109.46935 * 60.00033 * 12 11 10 34 34 H 1.08998 * 109.47111 * 300.00052 * 12 11 10 35 35 H 1.08997 * 109.59445 * 294.59662 * 14 13 12 36 36 H 1.08998 * 109.72492 * 174.21602 * 14 13 12 37 37 H 1.08998 * 109.37493 * 290.11430 * 15 14 13 38 38 H 1.09003 * 109.27947 * 170.41535 * 15 14 13 39 39 H 0.97005 * 118.53979 * 161.86276 * 16 15 14 40 40 H 1.09000 * 109.46785 * 302.07606 * 21 19 13 41 41 H 1.08996 * 109.47310 * 182.08041 * 21 19 13 42 42 H 1.08996 * 109.47114 * 305.94683 * 22 21 19 43 43 H 1.08996 * 109.47556 * 300.00046 * 23 22 21 44 44 H 1.08997 * 109.47145 * 60.00850 * 23 22 21 45 45 H 1.08995 * 109.47686 * 299.99942 * 24 23 22 46 46 H 1.09006 * 109.46902 * 180.02562 * 24 23 22 47 47 H 1.09004 * 109.46837 * 179.97438 * 25 24 23 48 48 H 1.08996 * 109.47175 * 59.99866 * 25 24 23 49 49 H 1.08996 * 109.47249 * 300.00196 * 26 25 24 50 50 H 1.08998 * 109.47379 * 180.02562 * 26 25 24 51 51 H 1.09006 * 109.47140 * 180.02562 * 27 26 25 52 52 H 1.09004 * 109.47557 * 60.00123 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9795 -5.3242 -0.0001 12 6 3.1515 -6.3076 0.0005 13 7 2.6365 -7.6834 0.0005 14 6 1.6755 -7.8868 -1.0956 15 6 2.3400 -7.4821 -2.4129 16 7 3.6426 -8.1301 -2.5360 17 6 4.2957 -8.6532 -1.4930 18 8 5.3879 -9.1464 -1.6794 19 6 3.7328 -8.6560 -0.0999 20 1 3.3545 -9.6508 0.1355 21 6 4.8349 -8.2835 0.8939 22 6 4.2804 -8.3487 2.3185 23 6 5.3353 -7.8348 3.3003 24 6 4.7805 -7.8995 4.7247 25 6 4.4262 -9.3476 5.0687 26 6 3.3714 -9.8616 4.0869 27 6 3.9261 -9.7969 2.6625 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8906 30 1 3.1246 -3.7313 -0.8894 31 1 1.3712 -5.4840 -0.8904 32 1 1.3706 -5.4847 0.8896 33 1 3.7595 -6.1477 0.8910 34 1 3.7608 -6.1474 -0.8890 35 1 0.7927 -7.2701 -0.9270 36 1 1.3850 -8.9364 -1.1401 37 1 2.4708 -6.4002 -2.4345 38 1 1.7047 -7.7862 -3.2448 39 1 4.0527 -8.1832 -3.4135 40 1 5.1847 -7.2722 0.6862 41 1 5.6651 -8.9826 0.7947 42 1 3.3861 -7.7297 2.3890 43 1 6.2296 -8.4538 3.2298 44 1 5.5873 -6.8030 3.0555 45 1 3.8864 -7.2801 4.7950 46 1 5.5319 -7.5329 5.4242 47 1 4.0314 -9.3937 6.0837 48 1 5.3204 -9.9669 4.9985 49 1 2.4773 -9.2422 4.1571 50 1 3.1187 -10.8931 4.3322 51 1 3.1744 -10.1626 1.9629 52 1 4.8203 -10.4162 2.5922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421035753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:22 Heat of formation + Delta-G solvation = -85.203104 kcal Electronic energy + Delta-G solvation = -28698.156468 eV Core-core repulsion = 25014.252396 eV Total energy + Delta-G solvation = -3683.904071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14413 -39.52048 -38.73480 -35.99284 -34.82925 -34.57021 -32.92548 -31.55973 -30.62709 -28.70566 -27.77849 -27.10437 -24.64533 -24.17043 -23.43509 -22.20470 -21.76013 -20.50006 -19.62192 -19.56311 -18.37947 -17.83504 -17.03655 -16.89017 -16.73560 -16.38057 -16.07931 -15.81113 -15.49893 -15.12001 -15.00968 -14.80503 -14.68667 -14.66555 -14.25480 -13.97115 -13.56967 -13.32087 -13.17056 -13.13553 -12.93782 -12.87521 -12.84133 -12.67062 -12.55500 -12.40278 -12.26287 -11.97959 -11.91088 -11.78479 -11.56905 -11.35779 -11.33358 -11.18905 -11.14297 -10.83768 -10.71822 -10.29440 -10.17257 -9.31042 -8.62900 -8.37115 -6.11404 1.31976 1.37411 1.46072 1.48600 1.75558 2.12334 2.28578 2.82280 2.97338 3.33433 3.41744 3.63934 3.85370 3.87838 3.96546 3.98074 4.04881 4.07473 4.19795 4.25941 4.31708 4.41247 4.45569 4.51813 4.53409 4.62149 4.65866 4.73080 4.73537 4.74694 4.75751 4.87552 4.88987 4.90616 5.02536 5.08147 5.14885 5.19482 5.25293 5.33046 5.35624 5.40813 5.41109 5.44948 5.49715 5.57549 5.61336 5.74838 5.89510 5.92376 6.18891 6.19403 7.06158 7.07146 8.72131 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.002960 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.068798 B = 9458.116963 C =11118.079550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.018 3.982 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.069 0.931 9 S -0.183 6.183 10 C -0.090 4.090 11 C -0.082 4.082 12 C 0.061 3.939 13 N -0.509 5.509 14 C 0.028 3.972 15 C 0.067 3.933 16 N -0.715 5.715 17 C 0.486 3.514 18 O -0.593 6.593 19 C 0.080 3.920 20 H 0.132 0.868 21 C -0.097 4.097 22 C -0.073 4.073 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.109 4.109 28 H 0.271 0.729 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.401 0.599 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.058 0.942 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 -21.787 2.729 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.687 4.687 8 H 0.087 0.913 9 S 0.046 5.954 10 C -0.239 4.239 11 C -0.121 4.121 12 C -0.069 4.069 13 N -0.232 5.232 14 C -0.100 4.100 15 C -0.058 4.058 16 N -0.366 5.366 17 C 0.272 3.728 18 O -0.474 6.474 19 C -0.032 4.032 20 H 0.149 0.851 21 C -0.135 4.135 22 C -0.091 4.091 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.154 4.154 27 C -0.146 4.146 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.237 0.763 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.596 -22.178 3.308 22.889 hybrid contribution 2.327 1.731 -1.395 3.218 sum 6.922 -20.447 1.913 21.671 Atomic orbital electron populations 1.70137 1.07499 1.28428 1.48070 1.25980 0.95987 1.02854 0.93867 0.85045 0.78418 0.77091 0.78322 1.18953 1.19682 1.19673 1.23072 0.94640 0.92374 1.58647 0.91329 1.84501 1.13383 1.00559 1.96978 1.23151 1.00288 0.98034 1.02441 1.21251 0.97531 0.89705 1.03615 1.22176 0.96467 0.87216 1.01000 1.62678 1.13580 1.02491 1.44464 1.22791 0.96329 1.04512 0.86354 1.22315 0.83683 0.97901 1.01885 1.45680 1.21784 1.58336 1.10759 1.21685 0.84802 0.76769 0.89575 1.90711 1.22457 1.48074 1.86131 1.22002 0.92354 0.99658 0.89138 0.85108 1.21595 0.96167 1.01598 0.94167 1.21023 0.98681 0.97721 0.91714 1.21578 0.98263 1.00498 0.94960 1.21513 1.00719 0.97282 0.96147 1.21523 0.99144 0.95817 0.99003 1.21500 0.98225 1.01125 0.94585 1.21562 1.00758 0.95513 0.96760 0.91969 0.92416 0.92653 0.90457 0.90701 0.90006 0.95322 0.86979 0.87925 0.91648 0.87199 0.76289 0.92601 0.91113 0.90281 0.92065 0.92980 0.92560 0.91984 0.91793 0.91992 0.92336 0.91440 0.91440 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.54 13.22 21.65 0.29 -53.25 16 2 C 0.02 1.03 5.49 84.86 0.47 1.49 16 3 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.54 -30.65 9.50 67.95 0.65 -30.00 16 8 H 0.07 3.81 7.80 -2.91 -0.02 3.78 16 9 S -0.18 -9.30 21.44 -56.49 -1.21 -10.51 16 10 C -0.09 -3.39 5.67 71.98 0.41 -2.98 16 11 C -0.08 -2.29 4.56 30.59 0.14 -2.15 16 12 C 0.06 1.40 3.27 86.30 0.28 1.69 16 13 N -0.51 -9.44 4.30 -875.47 -3.77 -13.21 16 14 C 0.03 0.41 5.43 86.24 0.47 0.88 16 15 C 0.07 1.01 6.34 86.47 0.55 1.56 16 16 N -0.71 -13.47 5.32 -466.10 -2.48 -15.96 16 17 C 0.49 11.42 6.67 87.68 0.58 12.01 16 18 O -0.59 -18.52 17.02 -3.04 -0.05 -18.57 16 19 C 0.08 1.54 2.27 44.03 0.10 1.64 16 20 H 0.13 2.19 6.48 -2.38 -0.02 2.17 16 21 C -0.10 -1.97 3.39 30.60 0.10 -1.87 16 22 C -0.07 -1.31 1.81 -10.79 -0.02 -1.33 16 23 C -0.12 -2.09 5.20 30.59 0.16 -1.93 16 24 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 25 C -0.12 -1.73 5.92 30.59 0.18 -1.54 16 26 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 27 C -0.11 -1.67 4.98 30.59 0.15 -1.52 16 28 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 30 H 0.05 2.11 8.14 -2.40 -0.02 2.09 16 31 H 0.08 2.01 5.63 -2.39 -0.01 2.00 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 1.98 5.78 -2.39 -0.01 1.97 16 34 H 0.03 0.72 6.12 -2.39 -0.01 0.70 16 35 H 0.11 1.64 6.56 -2.39 -0.02 1.63 16 36 H 0.10 1.18 8.08 -2.39 -0.02 1.16 16 37 H 0.07 1.21 6.16 -2.39 -0.01 1.19 16 38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.40 7.03 8.84 -92.70 -0.82 6.21 16 40 H 0.06 1.28 6.27 -2.39 -0.01 1.26 16 41 H 0.07 1.57 7.74 -2.39 -0.02 1.55 16 42 H 0.08 1.62 6.91 -2.39 -0.02 1.60 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 50 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.07 0.98 6.55 -2.38 -0.02 0.97 16 52 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -68.81 397.61 -0.53 -69.34 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.08 Total: 24.03 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 4.58 Total: -27.42 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -5.96 Total: -82.42 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -1.21 Total: -10.51 kcal Total: -68.81 -0.53 -69.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421035753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.864 kcal (2) G-P(sol) polarization free energy of solvation -68.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds