Wall clock time and date at job start Tue Mar 31 2020 22:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99870 * 2 1 4 4 H 1.48504 * 109.47047 * 240.00467 * 3 2 1 5 5 H 1.48503 * 109.46871 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47097 * 120.00211 * 3 2 1 7 7 C 1.38807 * 120.00521 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00676 * 197.03883 * 7 2 1 9 9 N 1.36944 * 119.99729 * 17.03512 * 7 2 1 10 10 C 1.46897 * 120.70066 * 206.79336 * 9 7 2 11 11 C 1.53150 * 109.12183 * 235.42404 * 10 9 7 12 12 C 1.53204 * 109.34596 * 303.48963 * 11 10 9 13 13 C 1.52513 * 109.35475 * 58.89222 * 12 11 10 14 14 C 1.52916 * 114.17305 * 75.69669 * 13 12 11 15 15 N 1.47169 * 87.84014 * 88.17693 * 14 13 12 16 16 C 1.34778 * 135.99679 * 206.63246 * 15 14 13 17 17 O 1.21283 * 119.99992 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99921 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.54617 * 59.81968 * 18 16 15 20 20 F 1.39905 * 109.47137 * 300.17830 * 19 18 16 21 21 C 1.53175 * 109.54413 * 179.97438 * 18 16 15 22 22 C 1.53094 * 109.16688 * 62.97120 * 21 18 16 23 23 O 1.42911 * 109.42017 * 57.60142 * 22 21 18 24 24 C 1.42900 * 114.09688 * 298.86502 * 23 22 21 25 25 C 1.53090 * 109.42696 * 61.14154 * 24 23 22 26 26 C 1.47176 * 88.00914 * 26.88012 * 15 14 13 27 27 C 1.47140 * 120.70187 * 26.82045 * 9 7 2 28 28 H 0.97002 * 120.00280 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.52524 * 115.53438 * 10 9 7 30 30 H 1.08991 * 109.58691 * 355.35185 * 10 9 7 31 31 H 1.08998 * 109.49184 * 183.52213 * 11 10 9 32 32 H 1.09007 * 109.51017 * 63.46396 * 11 10 9 33 33 H 1.09001 * 109.48979 * 298.93272 * 12 11 10 34 34 H 1.08996 * 109.49563 * 178.85894 * 12 11 10 35 35 H 1.09003 * 113.49117 * 333.43468 * 14 13 12 36 36 H 1.08996 * 113.54913 * 202.92462 * 14 13 12 37 37 H 1.09001 * 109.47203 * 60.17256 * 19 18 16 38 38 H 1.08997 * 109.47411 * 180.18060 * 19 18 16 39 39 H 1.09005 * 109.52354 * 303.07138 * 21 18 16 40 40 H 1.09002 * 109.57962 * 182.90989 * 21 18 16 41 41 H 1.08994 * 109.48650 * 177.59201 * 22 21 18 42 42 H 1.09001 * 109.48207 * 297.62142 * 22 21 18 43 43 H 1.08992 * 109.47340 * 301.15127 * 24 23 22 44 44 H 1.09008 * 109.48201 * 181.12945 * 24 23 22 45 45 H 1.08996 * 109.52109 * 182.48815 * 25 24 23 46 46 H 1.09004 * 109.52711 * 62.29854 * 25 24 23 47 47 H 1.08999 * 113.48827 * 87.85430 * 26 15 14 48 48 H 1.08991 * 113.49602 * 218.37039 * 26 15 14 49 49 H 1.09010 * 109.63862 * 9.05524 * 27 9 7 50 50 H 1.08994 * 109.63977 * 248.43557 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0548 -1.2227 0.2735 9 7 1.3707 -2.3619 -0.3485 10 6 1.8310 -3.6569 0.1702 11 6 2.1141 -4.5963 -1.0058 12 6 0.8545 -4.7233 -1.8685 13 6 0.4466 -3.3433 -2.3737 14 6 1.3166 -2.8113 -3.5132 15 7 0.4099 -3.4944 -4.4499 16 6 0.5081 -4.0126 -5.6902 17 8 1.5626 -3.9616 -6.2870 18 6 -0.6926 -4.6553 -6.3355 19 6 -1.8228 -3.6302 -6.4491 20 9 -2.1659 -3.1710 -5.1728 21 6 -0.3158 -5.1586 -7.7322 22 6 0.7602 -6.2401 -7.6034 23 8 0.2730 -7.2989 -6.7763 24 6 -0.0511 -6.8965 -5.4440 25 6 -1.1596 -5.8414 -5.4861 26 6 -0.6525 -3.3580 -3.4406 27 6 0.2083 -2.3373 -1.2503 28 1 -0.4851 0.8400 0.0004 29 1 1.0584 -4.0904 0.8051 30 1 2.7425 -3.5148 0.7507 31 1 2.3960 -5.5786 -0.6268 32 1 2.9278 -4.1913 -1.6075 33 1 0.0460 -5.1456 -1.2718 34 1 1.0593 -5.3755 -2.7175 35 1 2.3281 -3.2173 -3.5136 36 1 1.2980 -1.7253 -3.6048 37 1 -1.4917 -2.7906 -7.0603 38 1 -2.6916 -4.0971 -6.9129 39 1 0.0701 -4.3300 -8.3262 40 1 -1.1964 -5.5771 -8.2196 41 1 1.0016 -6.6322 -8.5913 42 1 1.6555 -5.8105 -7.1540 43 1 0.8335 -6.4755 -4.9662 44 1 -0.3941 -7.7615 -4.8762 45 1 -1.3773 -5.5012 -4.4738 46 1 -2.0577 -6.2740 -5.9271 47 1 -1.2014 -2.4190 -3.5118 48 1 -1.3079 -4.2267 -3.3795 49 1 0.0923 -1.3385 -1.6713 50 1 -0.6901 -2.6116 -0.6974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982012592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:28 Heat of formation + Delta-G solvation = -64.181975 kcal Electronic energy + Delta-G solvation = -33007.262297 eV Core-core repulsion = 28758.056594 eV Total energy + Delta-G solvation = -4249.205703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -47.95467 -41.01524 -39.66473 -37.67011 -35.84780 -34.63925 -32.87100 -31.43381 -30.31128 -29.95141 -28.13740 -26.29118 -25.70080 -25.37775 -23.81546 -23.40331 -22.28127 -21.76561 -20.56345 -18.47149 -17.95030 -16.93537 -16.87893 -16.65235 -16.33308 -16.04114 -15.96202 -15.57421 -15.03274 -14.87867 -14.55998 -14.38846 -13.99858 -13.87624 -13.63376 -13.48182 -13.34623 -12.96156 -12.73890 -12.56974 -12.42740 -12.15842 -11.98810 -11.76329 -11.63338 -11.45362 -11.23572 -11.16951 -10.99246 -10.81863 -10.73695 -10.59466 -10.48010 -10.27830 -10.05325 -9.93135 -9.77778 -9.65057 -9.40257 -9.25090 -8.50374 -8.36252 -6.71129 -5.82539 -3.22865 2.63660 3.01691 3.37047 3.43099 3.44834 3.74349 4.08047 4.19020 4.24204 4.45885 4.56152 4.71617 4.76100 4.81815 4.87121 5.07553 5.19410 5.22425 5.30422 5.35212 5.38812 5.41375 5.45594 5.53609 5.56851 5.64961 5.68309 5.75442 5.78819 5.82678 5.91232 5.94949 6.00768 6.08616 6.11160 6.17360 6.25227 6.37636 6.51316 6.62834 6.74341 6.84283 6.97730 7.06013 7.23720 7.54085 7.76914 7.99029 8.25985 8.39874 9.17600 9.81032 10.37684 11.26381 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.003707 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.092567 B = 7552.328747 C = 8089.296299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.146 3.854 11 C -0.134 4.134 12 C -0.079 4.079 13 C -0.120 4.120 14 C 0.127 3.873 15 N -0.633 5.633 16 C 0.544 3.456 17 O -0.547 6.547 18 C -0.107 4.107 19 C 0.074 3.926 20 F -0.200 7.200 21 C -0.126 4.126 22 C 0.051 3.949 23 O -0.384 6.384 24 C 0.062 3.938 25 C -0.148 4.148 26 C 0.120 3.880 27 C 0.194 3.806 28 H 0.254 0.746 29 H 0.018 0.982 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.073 0.927 49 H 0.091 0.909 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -11.787 -12.711 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.173 4.173 12 C -0.116 4.116 13 C -0.123 4.123 14 C 0.005 3.995 15 N -0.366 5.366 16 C 0.333 3.667 17 O -0.426 6.426 18 C -0.111 4.111 19 C 0.019 3.981 20 F -0.181 7.181 21 C -0.164 4.164 22 C -0.025 4.025 23 O -0.303 6.303 24 C -0.015 4.015 25 C -0.185 4.185 26 C -0.003 4.003 27 C 0.068 3.932 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.113 0.887 48 H 0.091 0.909 49 H 0.109 0.891 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.888 -11.854 -13.242 18.433 hybrid contribution 0.303 1.351 0.053 1.386 sum -4.585 -10.503 -13.189 17.473 Atomic orbital electron populations 1.69998 1.05147 1.25634 1.54046 1.24975 0.95262 0.98238 1.00962 0.86417 0.78982 0.83501 0.78181 1.21057 1.21639 1.20899 1.19141 0.92647 0.84755 1.41503 0.91672 1.44026 1.34353 1.01358 1.51501 1.20872 0.97462 0.86898 0.92848 1.22019 0.97264 0.99087 0.98944 1.21012 0.98096 0.94269 0.98271 1.22717 0.95357 0.98392 0.95833 1.22979 0.95128 0.97465 0.83921 1.49862 1.16866 1.56124 1.13714 1.19671 0.89092 0.78676 0.79267 1.90636 1.30269 1.59817 1.61922 1.21504 0.94821 0.96677 0.98069 1.21994 0.97245 0.97144 0.81755 1.92846 1.93511 1.90405 1.41343 1.21952 1.00578 1.00137 0.93781 1.22805 0.96606 0.87609 0.95519 1.87891 1.85214 1.34631 1.22571 1.22543 0.96601 0.97961 0.84426 1.22358 0.99993 0.94747 1.01430 1.23382 0.91602 1.02210 0.83102 1.20598 0.88964 0.96391 0.87287 0.93554 0.96403 0.92895 0.93057 0.92413 0.92132 0.93601 0.91153 0.89623 0.90340 0.89679 0.89875 0.90307 0.88949 0.90358 0.93015 0.88431 0.89154 0.89868 0.88748 0.90860 0.89118 0.95623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.97 11.16 55.49 0.62 -24.35 16 2 C 0.00 0.11 4.93 -17.43 -0.09 0.02 16 3 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.58 9.60 -15.06 -0.14 -6.73 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -13.86 3.01 -172.51 -0.52 -14.38 16 10 C 0.15 2.90 6.45 -3.75 -0.02 2.87 16 11 C -0.13 -2.23 6.02 -26.55 -0.16 -2.39 16 12 C -0.08 -1.24 5.10 -26.88 -0.14 -1.38 16 13 C -0.12 -2.07 0.95 -154.88 -0.15 -2.22 16 14 C 0.13 2.26 7.65 -8.18 -0.06 2.20 16 15 N -0.63 -9.94 3.29 -184.95 -0.61 -10.55 16 16 C 0.54 8.33 5.41 -10.98 -0.06 8.27 16 17 O -0.55 -9.99 14.62 5.55 0.08 -9.91 16 18 C -0.11 -1.22 0.51 -155.48 -0.08 -1.30 16 19 C 0.07 0.73 6.36 37.16 0.24 0.96 16 20 F -0.20 -2.44 11.81 2.25 0.03 -2.42 16 21 C -0.13 -1.29 4.56 -26.59 -0.12 -1.41 16 22 C 0.05 0.60 6.55 37.21 0.24 0.84 16 23 O -0.38 -4.83 10.77 -35.23 -0.38 -5.21 16 24 C 0.06 0.70 6.62 37.20 0.25 0.95 16 25 C -0.15 -1.54 4.69 -26.59 -0.12 -1.66 16 26 C 0.12 1.79 4.48 -8.04 -0.04 1.76 16 27 C 0.19 4.21 4.48 -3.86 -0.02 4.19 16 28 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.03 7.47 -51.93 -0.39 0.64 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.69 7.95 -51.93 -0.41 0.27 16 35 H 0.07 1.32 7.46 -51.93 -0.39 0.93 16 36 H 0.09 1.64 7.97 -51.93 -0.41 1.23 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.85 8.02 -51.93 -0.42 0.43 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.12 5.81 -51.93 -0.30 0.82 16 43 H 0.05 0.69 7.38 -51.93 -0.38 0.31 16 44 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 45 H 0.09 0.98 5.00 -51.93 -0.26 0.72 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 1.48 7.08 -51.93 -0.37 1.11 16 48 H 0.07 0.97 5.36 -51.93 -0.28 0.69 16 49 H 0.09 2.22 5.93 -51.92 -0.31 1.91 16 50 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -29.88 370.90 -8.80 -38.68 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.11 Total: 1.44 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.47 Total: 4.98 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.51 Total: -49.28 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.30 Total: -15.12 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.03 Total: -2.42 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.88 -8.80 -38.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982012592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.504 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds