Wall clock time and date at job start Tue Mar 31 2020 22:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42892 * 114.00033 * 2 1 4 4 C 1.53001 * 109.47039 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46352 * 300.00143 * 4 3 2 6 6 N 1.46496 * 109.46976 * 59.99489 * 5 4 3 7 7 C 1.34782 * 120.00191 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99491 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00190 * 180.02562 * 7 6 5 10 10 H 1.08994 * 110.49139 * 38.75311 * 9 7 6 11 11 C 1.54108 * 110.54828 * 275.89740 * 9 7 6 12 12 N 1.47055 * 103.85993 * 241.40846 * 11 9 7 13 13 C 1.33946 * 109.18363 * 359.97438 * 12 11 9 14 14 O 1.21587 * 123.04849 * 180.02562 * 13 12 11 15 15 N 1.33950 * 113.91240 * 0.02562 * 13 12 11 16 16 C 1.53045 * 109.45933 * 59.97501 * 4 3 2 17 17 C 1.53159 * 109.32722 * 181.38721 * 16 4 3 18 18 N 1.46934 * 108.76633 * 305.35285 * 17 16 4 19 19 C 1.36936 * 120.62896 * 233.63400 * 18 17 16 20 20 H 1.08000 * 119.99898 * 151.81462 * 19 18 17 21 21 C 1.38818 * 120.00077 * 331.80931 * 19 18 17 22 22 N 1.31611 * 119.99942 * 343.07980 * 21 19 18 23 23 Si 1.86804 * 119.99801 * 163.08316 * 21 19 18 24 24 H 1.48498 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46954 * 120.00474 * 23 21 19 26 26 H 1.48506 * 109.46727 * 239.99916 * 23 21 19 27 27 C 1.46923 * 118.73831 * 53.61199 * 18 17 16 28 28 C 1.53046 * 109.46194 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.47026 * 59.99511 * 1 2 3 30 30 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46399 * 299.99864 * 1 2 3 32 32 H 1.09007 * 109.47534 * 60.00123 * 3 2 1 33 33 H 1.09001 * 109.47232 * 299.99927 * 3 2 1 34 34 H 1.08995 * 109.47396 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.46642 * 299.99876 * 5 4 3 36 36 H 0.97003 * 120.00203 * 0.02562 * 6 5 4 37 37 H 1.09000 * 110.54742 * 359.97438 * 11 9 7 38 38 H 1.08989 * 110.54846 * 122.81355 * 11 9 7 39 39 H 0.96997 * 125.41093 * 180.02562 * 12 11 9 40 40 H 0.97006 * 125.40909 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.49378 * 301.32133 * 16 4 3 42 42 H 1.08997 * 109.49720 * 61.41731 * 16 4 3 43 43 H 1.08998 * 109.58950 * 185.56973 * 17 16 4 44 44 H 1.08996 * 109.71177 * 65.20800 * 17 16 4 45 45 H 0.97002 * 120.00505 * 179.97438 * 22 21 19 46 46 H 1.09007 * 109.58330 * 186.60508 * 27 18 17 47 47 H 1.08997 * 109.58455 * 66.17998 * 27 18 17 48 48 H 1.09004 * 109.49676 * 298.58489 * 28 4 3 49 49 H 1.09002 * 109.49356 * 58.64261 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9862 0.4255 1.2502 6 7 3.3902 -0.9127 1.2502 7 6 3.6481 -1.7655 2.2615 8 8 4.3735 -1.4247 3.1719 9 6 3.0354 -3.1423 2.2612 10 1 3.0234 -3.5543 1.2522 11 6 1.6114 -3.1007 2.8488 12 7 1.6922 -3.9726 4.0302 13 6 2.9375 -4.4542 4.1374 14 8 3.2835 -5.2053 5.0288 15 7 3.7672 -4.0335 3.1737 16 6 3.9873 0.4242 -1.2484 17 6 5.5114 0.2748 -1.2273 18 7 6.1149 1.6064 -1.0805 19 6 7.0606 2.0455 -1.9683 20 1 7.1718 3.1025 -2.1599 21 6 7.8763 1.1320 -2.6219 22 7 7.9846 -0.0978 -2.1656 23 14 8.8202 1.6482 -4.1490 24 1 8.5284 3.0720 -4.4536 25 1 10.2763 1.4807 -3.9110 26 1 8.4057 0.8018 -5.2968 27 6 5.6842 2.4580 0.0365 28 6 4.1578 2.5828 0.0013 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.0727 0.3389 1.2506 35 1 3.6642 0.9666 2.1399 36 1 2.8098 -1.1852 0.5222 37 1 1.3477 -2.0843 3.1412 38 1 0.8902 -3.4934 2.1321 39 1 0.9599 -4.1685 4.6353 40 1 4.7022 -4.2783 3.0906 41 1 3.5254 -0.5630 -1.2602 42 1 3.6881 0.9771 -2.1389 43 1 5.8472 -0.1777 -2.1603 44 1 5.8075 -0.3550 -0.3885 45 1 8.5542 -0.7363 -2.6225 46 1 6.1340 3.4460 -0.0626 47 1 5.9923 2.0069 0.9798 48 1 3.8570 3.1153 -0.9010 49 1 3.8168 3.1323 0.8787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162440860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:02 Heat of formation + Delta-G solvation = -66.374346 kcal Electronic energy + Delta-G solvation = -31892.421352 eV Core-core repulsion = 27663.040542 eV Total energy + Delta-G solvation = -4229.380810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38485 -39.91555 -38.53021 -37.20339 -36.25249 -34.60674 -33.15399 -33.12875 -31.02411 -30.01705 -29.49577 -27.75462 -26.38684 -25.74509 -23.92860 -23.67619 -22.34023 -21.89696 -20.95868 -20.37162 -18.74317 -17.93007 -17.57696 -16.65857 -16.41353 -16.31576 -15.87966 -15.80312 -15.56195 -15.30281 -14.84720 -14.71604 -14.41439 -14.10445 -13.92116 -13.72713 -13.54596 -13.41571 -13.18315 -12.91570 -12.84725 -12.54782 -12.23172 -11.99371 -11.67785 -11.51085 -11.34509 -10.97797 -10.76736 -10.60448 -10.43055 -10.29744 -10.25461 -10.15807 -9.92216 -9.81699 -9.58760 -9.53659 -9.46245 -8.95508 -8.72861 -8.47349 -6.68845 -5.81366 -3.24047 2.46570 2.74930 2.94883 3.25755 3.34729 3.43197 3.44868 3.63312 3.90511 4.10354 4.46988 4.62488 4.71991 4.86354 4.94865 5.00095 5.14229 5.19629 5.19819 5.30631 5.37049 5.42898 5.44525 5.45690 5.49807 5.58186 5.64158 5.93751 5.99102 6.16145 6.28427 6.32310 6.54156 6.56505 6.62920 6.70119 6.78027 6.81817 6.90687 6.99217 7.01428 7.21678 7.32493 7.63883 7.77172 7.78118 8.38360 8.42235 8.50255 9.18717 9.81864 10.38209 11.26920 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.003347 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.446272 B = 8363.637653 C = 9659.032532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.072 3.928 4 C -0.059 4.059 5 C 0.131 3.869 6 N -0.700 5.700 7 C 0.495 3.505 8 O -0.532 6.532 9 C 0.103 3.897 10 H 0.115 0.885 11 C 0.108 3.892 12 N -0.741 5.741 13 C 0.706 3.294 14 O -0.588 6.588 15 N -0.713 5.713 16 C -0.125 4.125 17 C 0.170 3.830 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.143 3.857 28 C -0.119 4.119 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.410 0.590 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.430 0.570 40 H 0.435 0.565 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.021 0.979 45 H 0.253 0.747 46 H 0.056 0.944 47 H 0.022 0.978 48 H 0.066 0.934 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 -1.876 4.010 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.004 4.004 4 C -0.060 4.060 5 C 0.008 3.992 6 N -0.357 5.357 7 C 0.277 3.723 8 O -0.408 6.408 9 C -0.007 4.007 10 H 0.133 0.867 11 C -0.018 4.018 12 N -0.404 5.404 13 C 0.405 3.595 14 O -0.466 6.466 15 N -0.374 5.374 16 C -0.165 4.165 17 C 0.044 3.956 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.016 3.984 28 C -0.159 4.159 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.251 0.749 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.272 0.728 40 H 0.278 0.722 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.040 0.960 48 H 0.085 0.915 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.768 -2.283 5.011 19.559 hybrid contribution 0.039 0.360 -1.124 1.181 sum -18.729 -1.923 3.886 19.224 Atomic orbital electron populations 1.22712 0.81330 1.02440 0.99914 1.87529 1.19326 1.28925 1.95355 1.22771 0.93856 0.83853 0.99933 1.20813 0.91427 0.97326 0.96387 1.21491 0.99609 0.81591 0.96510 1.46224 1.49872 1.14831 1.24784 1.20588 0.82262 0.86493 0.82941 1.90752 1.37039 1.77073 1.35977 1.21849 0.91635 0.90325 0.96908 0.86708 1.22209 0.94837 0.96510 0.88204 1.45039 1.12004 1.52137 1.31232 1.15851 0.81512 0.80288 0.81827 1.90992 1.78430 1.40781 1.36421 1.44836 1.13945 1.49840 1.28820 1.22178 1.00863 0.98356 0.95059 1.20800 0.86341 0.86760 1.01674 1.44050 1.44767 1.14761 1.27804 1.19208 1.10217 0.92388 1.16473 0.91678 1.25039 0.97483 0.96654 1.00343 1.70036 1.40593 1.04638 1.39203 0.86258 0.79469 0.77973 0.83266 1.20298 1.21742 1.21609 1.20933 0.90564 0.95515 0.91373 1.21993 0.99350 0.93497 1.01082 0.94122 0.89823 0.94349 0.93551 0.93030 0.89630 0.92521 0.74862 0.89598 0.88821 0.72792 0.72209 0.92709 0.92472 0.89609 0.96060 0.93691 0.92545 0.96023 0.91515 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.74 6.73 -35.23 -0.24 -3.98 16 3 C 0.07 0.78 4.80 37.16 0.18 0.96 16 4 C -0.06 -0.82 0.51 -154.46 -0.08 -0.90 16 5 C 0.13 1.97 3.81 -4.05 -0.02 1.96 16 6 N -0.70 -8.97 4.62 -60.30 -0.28 -9.25 16 7 C 0.49 6.79 6.93 -10.99 -0.08 6.72 16 8 O -0.53 -9.82 16.60 5.55 0.09 -9.73 16 9 C 0.10 1.03 4.17 -68.20 -0.28 0.75 16 10 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 11 C 0.11 0.79 7.70 -3.16 -0.02 0.77 16 12 N -0.74 -7.04 6.37 -64.70 -0.41 -7.45 16 13 C 0.71 9.76 8.92 -88.40 -0.79 8.98 16 14 O -0.59 -10.58 18.05 5.29 0.10 -10.48 16 15 N -0.71 -8.82 5.63 -59.33 -0.33 -9.15 16 16 C -0.13 -2.07 4.59 -26.63 -0.12 -2.20 16 17 C 0.17 3.73 4.83 -3.72 -0.02 3.72 16 18 N -0.59 -13.87 2.99 -172.34 -0.52 -14.39 16 19 C -0.25 -6.68 9.58 -15.06 -0.14 -6.82 16 20 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 22 N -0.90 -25.48 11.20 55.49 0.62 -24.86 16 23 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.14 2.76 6.05 -3.72 -0.02 2.74 16 28 C -0.12 -1.78 4.91 -26.61 -0.13 -1.92 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.62 4.98 -51.93 -0.26 1.36 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.41 4.55 4.71 -40.82 -0.19 4.36 16 37 H 0.09 0.62 7.72 -51.93 -0.40 0.22 16 38 H 0.09 0.38 8.14 -51.94 -0.42 -0.05 16 39 H 0.43 3.13 8.96 -40.82 -0.37 2.76 16 40 H 0.44 5.33 8.96 -40.82 -0.37 4.96 16 41 H 0.05 0.82 6.50 -51.93 -0.34 0.48 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.09 2.18 6.06 -51.93 -0.31 1.86 16 44 H 0.02 0.51 6.70 -51.93 -0.35 0.16 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.06 1.08 7.93 -51.92 -0.41 0.67 16 47 H 0.02 0.44 6.69 -51.93 -0.35 0.09 16 48 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -35.17 380.81 -8.30 -43.47 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.54 Total: 7.85 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: -0.50 Total: 16.09 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.92 Total: -65.10 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.17 -8.30 -43.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162440860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.905 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds