Wall clock time and date at job start Tue Mar 31 2020 22:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42892 * 114.00033 * 2 1 4 4 C 1.53001 * 109.47039 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46352 * 300.00143 * 4 3 2 6 6 N 1.46496 * 109.46976 * 59.99489 * 5 4 3 7 7 C 1.34782 * 120.00191 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99491 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00190 * 180.02562 * 7 6 5 10 10 H 1.08994 * 110.49139 * 38.75311 * 9 7 6 11 11 C 1.54108 * 110.54828 * 275.89740 * 9 7 6 12 12 N 1.47055 * 103.85993 * 241.40846 * 11 9 7 13 13 C 1.33946 * 109.18363 * 359.97438 * 12 11 9 14 14 O 1.21587 * 123.04849 * 180.02562 * 13 12 11 15 15 N 1.33950 * 113.91240 * 0.02562 * 13 12 11 16 16 C 1.53045 * 109.45933 * 59.97501 * 4 3 2 17 17 C 1.53159 * 109.32722 * 181.38721 * 16 4 3 18 18 N 1.46934 * 108.76633 * 305.35285 * 17 16 4 19 19 C 1.36936 * 120.62896 * 233.63400 * 18 17 16 20 20 H 1.08000 * 119.99898 * 151.81462 * 19 18 17 21 21 C 1.38818 * 120.00077 * 331.80931 * 19 18 17 22 22 N 1.31611 * 119.99942 * 343.07980 * 21 19 18 23 23 Si 1.86804 * 119.99801 * 163.08316 * 21 19 18 24 24 H 1.48498 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46954 * 120.00474 * 23 21 19 26 26 H 1.48506 * 109.46727 * 239.99916 * 23 21 19 27 27 C 1.46923 * 118.73831 * 53.61199 * 18 17 16 28 28 C 1.53046 * 109.46194 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.47026 * 59.99511 * 1 2 3 30 30 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46399 * 299.99864 * 1 2 3 32 32 H 1.09007 * 109.47534 * 60.00123 * 3 2 1 33 33 H 1.09001 * 109.47232 * 299.99927 * 3 2 1 34 34 H 1.08995 * 109.47396 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.46642 * 299.99876 * 5 4 3 36 36 H 0.97003 * 120.00203 * 0.02562 * 6 5 4 37 37 H 1.09000 * 110.54742 * 359.97438 * 11 9 7 38 38 H 1.08989 * 110.54846 * 122.81355 * 11 9 7 39 39 H 0.96997 * 125.41093 * 180.02562 * 12 11 9 40 40 H 0.97006 * 125.40909 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.49378 * 301.32133 * 16 4 3 42 42 H 1.08997 * 109.49720 * 61.41731 * 16 4 3 43 43 H 1.08998 * 109.58950 * 185.56973 * 17 16 4 44 44 H 1.08996 * 109.71177 * 65.20800 * 17 16 4 45 45 H 0.97002 * 120.00505 * 179.97438 * 22 21 19 46 46 H 1.09007 * 109.58330 * 186.60508 * 27 18 17 47 47 H 1.08997 * 109.58455 * 66.17998 * 27 18 17 48 48 H 1.09004 * 109.49676 * 298.58489 * 28 4 3 49 49 H 1.09002 * 109.49356 * 58.64261 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9862 0.4255 1.2502 6 7 3.3902 -0.9127 1.2502 7 6 3.6481 -1.7655 2.2615 8 8 4.3735 -1.4247 3.1719 9 6 3.0354 -3.1423 2.2612 10 1 3.0234 -3.5543 1.2522 11 6 1.6114 -3.1007 2.8488 12 7 1.6922 -3.9726 4.0302 13 6 2.9375 -4.4542 4.1374 14 8 3.2835 -5.2053 5.0288 15 7 3.7672 -4.0335 3.1737 16 6 3.9873 0.4242 -1.2484 17 6 5.5114 0.2748 -1.2273 18 7 6.1149 1.6064 -1.0805 19 6 7.0606 2.0455 -1.9683 20 1 7.1718 3.1025 -2.1599 21 6 7.8763 1.1320 -2.6219 22 7 7.9846 -0.0978 -2.1656 23 14 8.8202 1.6482 -4.1490 24 1 8.5284 3.0720 -4.4536 25 1 10.2763 1.4807 -3.9110 26 1 8.4057 0.8018 -5.2968 27 6 5.6842 2.4580 0.0365 28 6 4.1578 2.5828 0.0013 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.0727 0.3389 1.2506 35 1 3.6642 0.9666 2.1399 36 1 2.8098 -1.1852 0.5222 37 1 1.3477 -2.0843 3.1412 38 1 0.8902 -3.4934 2.1321 39 1 0.9599 -4.1685 4.6353 40 1 4.7022 -4.2783 3.0906 41 1 3.5254 -0.5630 -1.2602 42 1 3.6881 0.9771 -2.1389 43 1 5.8472 -0.1777 -2.1603 44 1 5.8075 -0.3550 -0.3885 45 1 8.5542 -0.7363 -2.6225 46 1 6.1340 3.4460 -0.0626 47 1 5.9923 2.0069 0.9798 48 1 3.8570 3.1153 -0.9010 49 1 3.8168 3.1323 0.8787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162440860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:01 Heat of formation + Delta-G solvation = -96.137477 kcal Electronic energy + Delta-G solvation = -31893.711978 eV Core-core repulsion = 27663.040542 eV Total energy + Delta-G solvation = -4230.671436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.33341 -41.07268 -39.69640 -38.19790 -37.34260 -36.05060 -34.60071 -34.00025 -32.71261 -31.57452 -30.44353 -28.89670 -27.45180 -26.72694 -25.42921 -24.55493 -23.82765 -22.81954 -22.47245 -21.46580 -20.02076 -19.10443 -18.72702 -18.11766 -17.37188 -17.09186 -16.97018 -16.81211 -16.73398 -16.49616 -16.13545 -15.85712 -15.45452 -15.30722 -15.25803 -15.00248 -14.83547 -14.79233 -14.29745 -14.07275 -13.87830 -13.66348 -13.37531 -13.14085 -13.02407 -12.88282 -12.62905 -12.53130 -12.23473 -12.19655 -11.94597 -11.80304 -11.58367 -11.45549 -11.27648 -11.12266 -11.06556 -10.54368 -10.51660 -10.40582 -9.90507 -9.81115 -8.62447 -7.84880 -5.29952 1.46031 1.46963 1.48381 1.58374 1.77987 1.98852 2.27460 2.52611 2.88269 3.08842 3.29940 3.35475 3.70301 3.72612 3.79089 4.00414 4.03333 4.05256 4.32592 4.39869 4.52630 4.58149 4.61378 4.66956 4.70321 4.72349 4.76995 4.78208 4.82147 4.89880 4.96076 5.06728 5.09328 5.21693 5.29289 5.32968 5.40860 5.52701 5.62594 5.68604 5.84972 5.88503 6.21036 6.29646 6.34669 6.41973 6.74052 7.18490 7.35611 7.52030 7.90710 8.41174 9.20819 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.003347 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.446272 B = 8363.637653 C = 9659.032532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.083 3.917 4 C -0.051 4.051 5 C 0.140 3.860 6 N -0.686 5.686 7 C 0.492 3.508 8 O -0.587 6.587 9 C 0.105 3.895 10 H 0.151 0.849 11 C 0.112 3.888 12 N -0.726 5.726 13 C 0.696 3.304 14 O -0.640 6.640 15 N -0.718 5.718 16 C -0.109 4.109 17 C 0.181 3.819 18 N -0.609 5.609 19 C -0.259 4.259 20 H 0.066 0.934 21 C -0.051 4.051 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.266 1.266 25 H -0.297 1.297 26 H -0.289 1.289 27 C 0.137 3.863 28 C -0.109 4.109 29 H 0.043 0.957 30 H 0.107 0.893 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.421 0.579 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.441 0.559 40 H 0.431 0.569 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.046 0.954 44 H -0.009 1.009 45 H 0.248 0.752 46 H 0.053 0.947 47 H 0.007 0.993 48 H 0.072 0.928 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.562 -1.047 3.039 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C 0.006 3.994 4 C -0.052 4.052 5 C 0.015 3.985 6 N -0.343 5.343 7 C 0.276 3.724 8 O -0.467 6.467 9 C -0.005 4.005 10 H 0.168 0.832 11 C -0.012 4.012 12 N -0.390 5.390 13 C 0.394 3.606 14 O -0.523 6.523 15 N -0.378 5.378 16 C -0.148 4.148 17 C 0.055 3.945 18 N -0.333 5.333 19 C -0.390 4.390 20 H 0.084 0.916 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.792 3.208 24 H -0.190 1.190 25 H -0.224 1.224 26 H -0.216 1.216 27 C 0.012 3.988 28 C -0.148 4.148 29 H 0.061 0.939 30 H 0.125 0.875 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.265 0.735 37 H 0.112 0.888 38 H 0.162 0.838 39 H 0.285 0.715 40 H 0.272 0.728 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.009 0.991 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.025 0.975 48 H 0.091 0.909 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.726 -1.407 3.998 23.118 hybrid contribution 1.262 0.149 -0.783 1.493 sum -21.464 -1.258 3.215 21.740 Atomic orbital electron populations 1.22939 0.79147 1.04266 1.00470 1.87461 1.21446 1.27950 1.95511 1.22513 0.90634 0.84914 1.01299 1.20690 0.94447 0.95952 0.94108 1.21229 0.96912 0.83015 0.97333 1.46107 1.49360 1.13982 1.24877 1.21321 0.81313 0.87770 0.81953 1.90734 1.39538 1.78347 1.38092 1.22137 0.92515 0.87351 0.98486 0.83210 1.22534 0.93712 0.96930 0.88055 1.44996 1.10676 1.51301 1.31984 1.16157 0.82796 0.80179 0.81436 1.90943 1.79640 1.43233 1.38441 1.44941 1.13978 1.49799 1.29097 1.21928 0.96333 0.99970 0.96531 1.20550 0.90055 0.85630 0.98255 1.44333 1.44724 1.15543 1.28696 1.19552 1.10274 0.92516 1.16623 0.91592 1.25763 0.98930 0.96792 1.03108 1.70202 1.41764 1.05663 1.40475 0.85266 0.77561 0.78096 0.79876 1.18980 1.22450 1.21600 1.21077 0.94083 0.94295 0.89361 1.21844 0.95427 0.94706 1.02860 0.93874 0.87464 0.93476 0.91814 0.92046 0.94444 0.92030 0.73477 0.88811 0.83785 0.71481 0.72755 0.90837 0.92582 0.93515 0.99077 0.94331 0.92844 0.97479 0.90944 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.84 6.73 -148.98 -1.00 -6.85 16 3 C 0.08 1.45 4.80 71.98 0.35 1.79 16 4 C -0.05 -1.33 0.51 -52.15 -0.03 -1.36 16 5 C 0.14 4.10 3.81 86.38 0.33 4.43 16 6 N -0.69 -16.44 4.62 -463.07 -2.14 -18.58 16 7 C 0.49 13.02 6.93 87.65 0.61 13.63 16 8 O -0.59 -22.12 16.60 -3.05 -0.05 -22.17 16 9 C 0.10 1.84 4.17 44.51 0.19 2.02 16 10 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 11 C 0.11 1.18 7.70 86.65 0.67 1.85 16 12 N -0.73 -12.04 6.37 -477.34 -3.04 -15.08 16 13 C 0.70 18.84 8.92 179.57 1.60 20.45 16 14 O -0.64 -23.54 18.05 -3.99 -0.07 -23.61 16 15 N -0.72 -17.43 5.63 -460.35 -2.59 -20.02 16 16 C -0.11 -3.48 4.59 30.66 0.14 -3.34 16 17 C 0.18 8.23 4.83 86.35 0.42 8.64 16 18 N -0.61 -29.43 2.99 -699.16 -2.09 -31.52 16 19 C -0.26 -13.99 9.58 84.04 0.81 -13.18 16 20 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 21 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 22 N -0.93 -55.24 11.20 21.65 0.24 -55.00 16 23 Si 0.96 44.48 29.59 68.60 2.03 46.51 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 27 C 0.14 5.39 6.05 86.36 0.52 5.91 16 28 C -0.11 -3.05 4.91 30.67 0.15 -2.90 16 29 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.04 1.48 4.98 -2.39 -0.01 1.47 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.42 8.04 4.71 -92.71 -0.44 7.60 16 37 H 0.09 0.93 7.72 -2.39 -0.02 0.92 16 38 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.44 5.33 8.96 -92.71 -0.83 4.49 16 40 H 0.43 10.91 8.96 -92.70 -0.83 10.08 16 41 H 0.07 2.06 6.50 -2.39 -0.02 2.04 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.05 2.48 6.06 -2.39 -0.01 2.46 16 44 H -0.01 -0.45 6.70 -2.39 -0.02 -0.46 16 45 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.05 2.07 7.93 -2.38 -0.02 2.05 16 47 H 0.01 0.31 6.69 -2.39 -0.02 0.29 16 48 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -83.59 380.81 -2.41 -86.00 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -1.10 Total: 23.30 kcal Atomic # 6 Polarization: 29.60 SS G_CDS: 7.41 Total: 37.01 kcal Atomic # 7 Polarization: -130.58 SS G_CDS: -9.63 Total: -140.20 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -1.13 Total: -52.62 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -83.59 -2.41 -86.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162440860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.140 kcal (2) G-P(sol) polarization free energy of solvation -83.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds