Wall clock time and date at job start Tue Mar 31 2020 22:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86809 * 119.99853 * 2 1 4 4 H 1.48503 * 109.46650 * 239.99463 * 3 2 1 5 5 H 1.48498 * 109.46849 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46933 * 119.99846 * 3 2 1 7 7 C 1.38800 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00468 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99674 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99770 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47061 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99785 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00013 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99747 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47535 * 324.99904 * 14 13 11 16 16 C 1.53000 * 109.47121 * 85.00007 * 14 13 11 17 17 C 1.53002 * 109.46965 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47132 * 299.99826 * 17 16 14 19 19 C 1.53000 * 109.47053 * 60.00228 * 18 17 16 20 20 H 1.08994 * 109.47081 * 59.99759 * 19 18 17 21 21 N 1.46898 * 109.47140 * 180.02562 * 19 18 17 22 22 C 1.46906 * 110.99888 * 275.00023 * 21 19 18 23 23 C 1.52993 * 109.47378 * 180.02562 * 22 21 19 24 24 C 1.54272 * 110.03069 * 292.90966 * 23 22 21 25 25 C 1.54967 * 104.15670 * 217.13649 * 24 23 22 26 26 C 1.54884 * 102.78130 * 37.88532 * 25 24 23 27 27 C 1.53868 * 110.03497 * 175.69102 * 23 22 21 28 28 C 1.53002 * 109.46965 * 299.99874 * 19 18 17 29 29 H 0.96991 * 120.00004 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47256 * 60.00154 * 10 9 7 31 31 H 1.08999 * 109.47162 * 299.99884 * 10 9 7 32 32 H 0.96996 * 119.99805 * 0.02562 * 13 11 10 33 33 H 1.08993 * 109.47159 * 299.99786 * 16 14 13 34 34 H 1.08994 * 109.47081 * 60.00009 * 16 14 13 35 35 H 1.09000 * 109.47526 * 59.99998 * 17 16 14 36 36 H 1.09003 * 109.47200 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47056 * 300.00460 * 18 17 16 38 38 H 1.08994 * 109.47050 * 180.02562 * 18 17 16 39 39 H 1.00904 * 110.99913 * 38.95089 * 21 19 18 40 40 H 1.09004 * 109.47040 * 299.99934 * 22 21 19 41 41 H 1.09000 * 109.47033 * 59.99886 * 22 21 19 42 42 H 1.08999 * 110.02125 * 54.29267 * 23 22 21 43 43 H 1.09002 * 110.48706 * 335.77729 * 24 23 22 44 44 H 1.08998 * 110.49014 * 98.42644 * 24 23 22 45 45 H 1.08998 * 110.71613 * 279.56968 * 25 24 23 46 46 H 1.09002 * 110.76330 * 156.22378 * 25 24 23 47 47 H 1.08994 * 110.48579 * 203.40329 * 26 25 24 48 48 H 1.09007 * 110.48563 * 80.75966 * 26 25 24 49 49 H 1.08998 * 110.03130 * 238.56878 * 27 23 22 50 50 H 1.08998 * 110.03036 * 359.95025 * 27 23 22 51 51 H 1.09004 * 109.46680 * 179.97438 * 28 19 18 52 52 H 1.08994 * 109.47127 * 299.99857 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8444 -6.3430 0.0033 14 6 2.3306 -7.7150 0.0034 15 1 1.4142 -7.7598 0.5918 16 6 2.0357 -8.1493 -1.4337 17 6 1.4997 -9.5824 -1.4335 18 6 2.5450 -10.5178 -0.8224 19 6 2.8400 -10.0835 0.6147 20 1 1.9237 -10.1286 1.2032 21 7 3.8440 -10.9811 1.2012 22 6 3.2123 -12.1834 1.7611 23 6 4.2870 -13.0916 2.3619 24 6 5.1905 -13.6521 1.2441 25 6 5.4992 -15.1015 1.6974 26 6 4.1575 -15.5584 2.3217 27 6 3.6307 -14.3030 3.0471 28 6 3.3759 -8.6504 0.6145 29 1 -0.4850 0.8400 -0.0004 30 1 3.1239 -3.7309 0.8925 31 1 3.1253 -3.7317 -0.8874 32 1 3.8011 -6.1834 0.0050 33 1 1.2914 -7.4827 -1.8692 34 1 2.9521 -8.1046 -2.0221 35 1 0.5834 -9.6276 -0.8450 36 1 1.2900 -9.8920 -2.4574 37 1 3.4614 -10.4725 -1.4110 38 1 2.1634 -11.5387 -0.8227 39 1 4.5501 -11.2260 0.5233 40 1 2.5055 -11.8939 2.5388 41 1 2.6845 -12.7179 0.9712 42 1 4.8862 -12.5346 3.0821 43 1 4.6611 -13.6553 0.2913 44 1 6.1096 -13.0710 1.1691 45 1 6.2950 -15.1112 2.4422 46 1 5.7605 -15.7261 0.8432 47 1 4.3235 -16.3681 3.0322 48 1 3.4609 -15.8696 1.5432 49 1 3.9121 -14.3343 4.0996 50 1 2.5465 -14.2434 2.9523 51 1 3.5856 -8.3409 1.6384 52 1 4.2922 -8.6052 0.0260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491865607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:54 Heat of formation + Delta-G solvation = -99.279831 kcal Electronic energy + Delta-G solvation = -26832.732584 eV Core-core repulsion = 23148.218100 eV Total energy + Delta-G solvation = -3684.514484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08178 -39.86434 -38.91042 -36.19075 -34.59570 -34.52480 -31.72291 -31.51096 -29.66962 -29.43807 -28.43594 -27.63832 -24.68638 -23.45200 -22.93485 -21.59330 -21.39459 -21.07255 -20.34618 -19.77350 -17.82157 -17.58315 -17.10524 -16.87558 -16.47474 -16.34096 -15.92474 -15.75490 -15.68093 -15.36020 -15.04298 -14.67294 -14.56874 -14.23090 -14.11924 -14.08268 -13.78958 -13.58129 -13.35463 -13.16723 -13.06991 -12.86218 -12.62312 -12.31500 -12.13690 -11.99778 -11.92237 -11.87278 -11.80220 -11.72192 -11.64783 -11.50621 -11.46838 -11.29108 -11.25444 -11.12571 -10.84479 -10.27757 -10.06249 -9.28274 -8.66554 -8.34135 -6.12533 1.27212 1.44257 1.47104 1.57064 1.62962 2.25434 2.29538 2.99832 3.13293 3.32696 3.70446 3.74412 3.78529 3.83619 3.88837 3.97114 4.11176 4.14498 4.20769 4.31288 4.40572 4.43078 4.46454 4.48691 4.51310 4.55614 4.59775 4.63801 4.69566 4.77832 4.84688 4.87002 4.94143 4.99929 5.02597 5.09511 5.10024 5.11698 5.15942 5.24949 5.27683 5.34884 5.36957 5.40541 5.41754 5.49275 5.57131 5.57286 6.11685 6.19888 6.52801 6.55934 7.06873 7.27869 8.74866 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.001609 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.660777 B =17399.542052 C =17752.028982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.709 5.709 14 C 0.148 3.852 15 H 0.058 0.942 16 C -0.126 4.126 17 C -0.109 4.109 18 C -0.137 4.137 19 C 0.096 3.904 20 H 0.067 0.933 21 N -0.685 5.685 22 C 0.069 3.931 23 C -0.088 4.088 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.099 4.099 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.415 0.585 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.348 0.652 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.317 -32.127 1.133 35.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.362 5.362 14 C 0.043 3.957 15 H 0.077 0.923 16 C -0.165 4.165 17 C -0.148 4.148 18 C -0.176 4.176 19 C -0.014 4.014 20 H 0.085 0.915 21 N -0.316 5.316 22 C -0.060 4.060 23 C -0.107 4.107 24 C -0.157 4.157 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.160 4.160 28 C -0.138 4.138 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.252 0.748 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.167 0.833 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.213 -32.054 1.763 34.347 hybrid contribution 1.307 1.087 -0.743 1.855 sum 13.520 -30.967 1.020 33.805 Atomic orbital electron populations 1.70178 1.07993 1.28672 1.47938 1.26132 0.95956 1.03315 0.93681 0.85003 0.77807 0.75669 0.79506 1.18633 1.20365 1.18656 1.23186 0.95369 0.92039 1.59023 0.89902 1.85572 1.10621 0.99228 1.97056 1.23381 1.03524 0.94457 1.06732 1.20070 0.86298 0.86692 0.74937 1.90685 1.17440 1.86082 1.50230 1.45831 1.10197 1.04919 1.75248 1.20955 0.97755 0.80181 0.96780 0.92333 1.21888 1.01432 0.96946 0.96221 1.21383 0.98407 0.93391 1.01596 1.22202 0.99831 0.99073 0.96524 1.21378 0.94512 0.91856 0.93679 0.91477 1.60494 1.14519 1.16691 1.39855 1.22081 0.96043 0.89807 0.98023 1.21754 0.96160 0.95253 0.97502 1.22448 0.99374 0.96079 0.97771 1.22518 0.97319 0.96103 1.00409 1.22365 0.96997 0.97308 0.99609 1.22184 1.00215 0.94050 0.99548 1.21624 0.97656 0.92996 1.01518 0.91995 0.87290 0.87252 0.74758 0.94428 0.90291 0.92738 0.90787 0.90405 0.91286 0.83299 0.92059 0.94784 0.91081 0.91712 0.91270 0.91537 0.91240 0.91422 0.91738 0.91761 0.91837 0.91158 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.55 -31.63 9.50 67.95 0.65 -30.98 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 10 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 11 C 0.53 20.11 7.81 87.66 0.68 20.79 16 12 O -0.57 -26.79 15.52 -3.05 -0.05 -26.84 16 13 N -0.71 -18.28 5.08 -442.52 -2.25 -20.53 16 14 C 0.15 3.41 2.46 44.99 0.11 3.52 16 15 H 0.06 1.71 7.58 -2.39 -0.02 1.70 16 16 C -0.13 -2.73 5.49 30.59 0.17 -2.56 16 17 C -0.11 -1.84 5.92 30.60 0.18 -1.66 16 18 C -0.14 -1.70 5.17 30.60 0.16 -1.54 16 19 C 0.10 1.38 2.47 44.92 0.11 1.49 16 20 H 0.07 1.16 7.80 -2.39 -0.02 1.14 16 21 N -0.69 -8.48 6.25 -491.57 -3.07 -11.55 16 22 C 0.07 0.82 4.60 86.30 0.40 1.22 16 23 C -0.09 -0.93 3.15 -10.07 -0.03 -0.96 16 24 C -0.12 -1.05 5.54 31.70 0.18 -0.87 16 25 C -0.13 -1.06 6.91 31.91 0.22 -0.84 16 26 C -0.13 -1.10 6.83 31.67 0.22 -0.88 16 27 C -0.12 -1.21 6.46 31.32 0.20 -1.01 16 28 C -0.10 -1.60 5.00 30.60 0.15 -1.45 16 29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 31 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 32 H 0.42 7.77 8.60 -92.71 -0.80 6.97 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.81 8.13 -2.39 -0.02 0.79 16 38 H 0.07 0.78 7.45 -2.39 -0.02 0.76 16 39 H 0.35 3.50 7.68 -89.69 -0.69 2.81 16 40 H 0.06 0.86 8.06 -2.38 -0.02 0.84 16 41 H 0.03 0.39 7.32 -2.39 -0.02 0.37 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.55 7.77 -2.39 -0.02 0.53 16 44 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 0.64 7.67 -2.39 -0.02 0.62 16 51 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -74.49 416.77 -0.52 -75.01 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -0.60 Total: 23.21 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 4.30 Total: -19.24 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -5.03 Total: -88.26 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -74.49 -0.52 -75.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491865607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.273 kcal (2) G-P(sol) polarization free energy of solvation -74.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds