Wall clock time and date at job start Tue Mar 31 2020 23:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47180 * 2 1 4 4 C 1.53008 * 109.47352 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46911 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46973 * 180.02562 * 5 4 3 7 7 N 1.46894 * 109.47330 * 179.97438 * 6 5 4 8 8 C 1.47829 * 111.00137 * 307.45980 * 7 6 5 9 9 C 1.54191 * 107.26603 * 214.65410 * 8 7 6 10 10 H 1.08997 * 112.67398 * 236.64960 * 9 8 7 11 11 C 1.53805 * 108.41845 * 111.22311 * 9 8 7 12 12 N 1.46490 * 108.30831 * 234.83511 * 11 9 8 13 13 C 1.34775 * 125.29243 * 178.12879 * 12 11 9 14 14 O 1.21285 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00224 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47097 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99866 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99772 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00096 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99906 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46954 * 89.99565 * 21 19 17 23 23 H 1.48497 * 109.47345 * 209.99611 * 21 19 17 24 24 H 1.48493 * 109.47079 * 330.00047 * 21 19 17 25 25 C 1.46642 * 109.42326 * 358.10949 * 12 11 9 26 26 C 1.53082 * 107.06872 * 17.54162 * 25 12 11 27 27 H 1.09003 * 113.16833 * 211.12835 * 26 25 12 28 28 C 1.48568 * 111.00012 * 189.99530 * 7 6 5 29 29 H 1.09003 * 109.46884 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47401 * 299.99755 * 1 2 3 31 31 H 1.09002 * 109.46953 * 60.00054 * 1 2 3 32 32 H 1.09006 * 109.47508 * 239.99998 * 2 1 3 33 33 H 1.09000 * 109.47648 * 120.00215 * 2 1 3 34 34 H 1.08995 * 109.47252 * 59.99991 * 3 2 1 35 35 H 1.09002 * 109.47134 * 299.99835 * 3 2 1 36 36 H 1.09000 * 109.46409 * 60.00232 * 4 3 2 37 37 H 1.08992 * 109.46940 * 300.00265 * 4 3 2 38 38 H 1.08995 * 109.47710 * 60.00198 * 5 4 3 39 39 H 1.09002 * 109.47116 * 299.99772 * 5 4 3 40 40 H 1.09004 * 109.47123 * 59.99189 * 6 5 4 41 41 H 1.09003 * 109.46976 * 300.00155 * 6 5 4 42 42 H 1.09007 * 109.88387 * 334.06719 * 8 7 6 43 43 H 1.09000 * 109.88675 * 95.08240 * 8 7 6 44 44 H 1.09001 * 109.71326 * 354.56242 * 11 9 8 45 45 H 1.09003 * 109.71369 * 115.09803 * 11 9 8 46 46 H 1.09003 * 109.47085 * 300.00424 * 15 13 12 47 47 H 1.08998 * 109.46922 * 60.00485 * 15 13 12 48 48 H 0.96996 * 119.99871 * 180.02562 * 20 19 17 49 49 H 1.09001 * 109.92230 * 136.83495 * 25 12 11 50 50 H 1.09001 * 109.91981 * 258.12787 * 25 12 11 51 51 H 1.09002 * 110.68652 * 278.40769 * 28 7 6 52 52 H 1.08999 * 110.68534 * 41.41287 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 6 5.6100 2.8851 0.0013 7 7 6.0996 4.2700 0.0013 8 6 5.4848 5.0493 -1.0942 9 6 6.5469 6.0471 -1.5980 10 1 6.2068 7.0817 -1.5520 11 6 6.9763 5.6263 -3.0137 12 7 8.4327 5.4692 -3.0252 13 6 9.1648 5.0733 -4.0853 14 8 8.6187 4.8152 -5.1370 15 6 10.6621 4.9525 -3.9642 16 16 11.3530 4.4050 -5.5450 17 6 13.0641 4.3497 -5.1282 18 1 13.3861 4.6152 -4.1321 19 6 13.9982 3.9658 -6.0804 20 7 13.6057 3.6427 -7.2946 21 14 15.8123 3.9079 -5.6389 22 1 16.1529 2.5582 -5.1213 23 1 16.6255 4.1941 -6.8480 24 1 16.1007 4.9250 -4.5961 25 6 8.9704 5.8102 -1.7042 26 6 7.8003 5.7674 -0.7181 27 1 7.9081 6.4726 0.1061 28 6 7.5649 4.3167 -0.2394 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 3.7163 3.3986 0.8912 39 1 3.7170 3.3991 -0.8887 40 1 5.9734 2.3715 -0.8889 41 1 5.9733 2.3708 0.8911 42 1 5.1898 4.3817 -1.9038 43 1 4.6135 5.5882 -0.7222 44 1 6.5025 4.6802 -3.2756 45 1 6.6835 6.3939 -3.7301 46 1 11.0846 5.9218 -3.6995 47 1 10.9064 4.2258 -3.1894 48 1 14.2585 3.3741 -7.9599 49 1 9.7275 5.0823 -1.4123 50 1 9.4024 6.8107 -1.7260 51 1 8.1130 4.1216 0.6824 52 1 7.8508 3.6047 -1.0137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754841621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:02 Heat of formation + Delta-G solvation = -53.210870 kcal Electronic energy + Delta-G solvation = -27056.383806 eV Core-core repulsion = 23373.867022 eV Total energy + Delta-G solvation = -3682.516784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.84766 -38.67820 -37.05631 -35.77112 -33.34236 -32.43860 -31.51008 -30.90102 -29.23086 -27.97034 -26.29580 -25.49648 -24.86877 -22.95193 -21.88823 -21.37166 -20.97856 -19.89027 -19.32831 -17.75516 -16.92579 -16.38172 -16.34835 -15.69712 -15.46600 -15.00883 -14.81068 -14.79207 -14.68932 -14.15134 -13.92998 -13.80963 -13.47121 -13.16227 -13.10875 -12.99021 -12.64819 -12.42720 -12.36148 -12.26289 -12.11499 -11.80830 -11.72759 -11.55014 -11.37933 -11.24685 -11.08696 -11.06562 -11.03315 -11.02441 -10.98683 -10.80141 -10.76070 -10.68489 -9.82610 -9.43914 -9.07516 -8.73734 -8.46282 -8.24606 -6.51587 -6.22515 -3.93402 2.91057 3.03614 3.21618 3.25618 3.29864 3.59903 3.62851 3.98551 4.19469 4.22720 4.35613 4.43140 4.51469 4.65581 4.75420 4.86084 4.88518 4.93875 4.99503 5.04076 5.07800 5.10318 5.12609 5.17559 5.31454 5.33681 5.37508 5.41382 5.42210 5.45856 5.53536 5.55487 5.57262 5.62639 5.64569 5.68229 5.71959 5.75086 5.79095 5.82449 5.88015 5.91693 5.94432 6.00297 6.03496 6.11964 6.44287 6.55618 6.73834 7.58510 7.64382 8.34290 8.53446 9.22683 10.84934 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.001913 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.450068 B =14636.786896 C =15334.580243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.119 4.119 6 C 0.045 3.955 7 N -0.516 5.516 8 C 0.042 3.958 9 C -0.107 4.107 10 H 0.103 0.897 11 C 0.113 3.887 12 N -0.622 5.622 13 C 0.547 3.453 14 O -0.515 6.515 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.108 3.892 26 C -0.096 4.096 27 H 0.109 0.891 28 C 0.039 3.961 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.268 0.732 49 H 0.078 0.922 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.613 0.257 19.893 29.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.083 4.083 7 N -0.240 5.240 8 C -0.086 4.086 9 C -0.127 4.127 10 H 0.121 0.879 11 C -0.010 4.010 12 N -0.359 5.359 13 C 0.336 3.664 14 O -0.389 6.389 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.016 4.016 26 C -0.115 4.115 27 H 0.127 0.873 28 C -0.088 4.088 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.088 0.912 51 H 0.104 0.896 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.466 -0.016 18.567 29.145 hybrid contribution 2.004 -0.139 0.720 2.134 sum -20.462 -0.155 19.286 28.119 Atomic orbital electron populations 1.21779 0.95958 1.01560 1.01771 1.21547 0.95817 0.97011 1.02033 1.21607 0.95276 0.96717 1.02051 1.21576 0.95475 0.96575 1.02189 1.21666 0.94370 0.96970 1.02677 1.22334 0.95555 0.89282 1.01172 1.64850 1.04392 1.11816 1.42919 1.23046 0.97215 0.95334 0.92990 1.22954 0.95469 1.00336 0.93891 0.87915 1.21898 0.81668 1.01225 0.96250 1.48200 1.06860 1.69234 1.11629 1.20046 0.88781 0.75650 0.81959 1.90711 1.72880 1.48138 1.27200 1.23508 0.93170 1.05054 1.07941 1.85406 1.03888 1.87100 1.07036 1.22859 0.91687 1.53157 1.00664 0.90916 1.24992 0.99570 0.94550 0.94436 1.70018 1.34849 1.42325 1.03064 0.86165 0.82652 0.78577 0.78094 1.20268 1.20726 1.19674 1.21726 0.96342 1.01335 0.82214 1.22765 0.93738 0.97556 0.97449 0.87332 1.23272 0.88997 0.95850 1.00698 0.92845 0.92813 0.92761 0.92032 0.92098 0.92029 0.92044 0.92000 0.91905 0.91155 0.91840 0.94523 0.90551 0.92964 0.90102 0.91743 0.91564 0.89234 0.89355 0.92172 0.90376 0.91214 0.89638 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.13 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.73 5.21 -26.73 -0.14 -0.87 16 4 C -0.12 -0.79 5.22 -26.73 -0.14 -0.93 16 5 C -0.12 -0.85 4.96 -26.73 -0.13 -0.98 16 6 C 0.04 0.38 4.99 -3.83 -0.02 0.36 16 7 N -0.52 -4.62 5.39 -230.59 -1.24 -5.86 16 8 C 0.04 0.36 4.92 -2.69 -0.01 0.34 16 9 C -0.11 -0.95 4.10 -88.15 -0.36 -1.31 16 10 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 11 C 0.11 1.39 6.33 -3.63 -0.02 1.37 16 12 N -0.62 -9.11 3.31 -173.03 -0.57 -9.68 16 13 C 0.55 10.75 7.85 -10.99 -0.09 10.67 16 14 O -0.52 -12.20 16.17 5.55 0.09 -12.11 16 15 C -0.15 -3.03 5.19 36.01 0.19 -2.84 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 17 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 21 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 25 C 0.11 1.17 5.86 -3.92 -0.02 1.15 16 26 C -0.10 -0.83 4.07 -88.33 -0.36 -1.19 16 27 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 28 C 0.04 0.36 5.80 -2.08 -0.01 0.35 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.47 6.61 -51.93 -0.34 0.13 16 40 H 0.04 0.35 7.90 -51.93 -0.41 -0.06 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.48 5.93 -51.93 -0.31 0.17 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.86 6.95 -51.93 -0.36 0.50 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 47 H 0.09 1.70 7.88 -51.92 -0.41 1.29 16 48 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 49 H 0.08 0.84 7.45 -51.93 -0.39 0.45 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 LS Contribution 417.91 15.07 6.30 6.30 Total: -1.00 -33.71 417.91 -12.41 -46.12 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -9.77 Total: -3.49 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.71 Total: -8.29 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -1.08 Total: -41.04 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.71 -12.41 -46.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754841621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.086 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds