Wall clock time and date at job start Tue Mar 31 2020 22:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.99782 * 2 1 4 4 C 1.54336 * 109.77431 * 121.16353 * 2 1 3 5 5 H 1.09000 * 110.66481 * 215.88120 * 4 2 1 6 6 N 1.46897 * 110.85592 * 339.02768 * 4 2 1 7 7 C 1.46899 * 111.00421 * 200.14883 * 6 4 2 8 8 C 1.53001 * 109.47171 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46924 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46924 * 180.02562 * 9 8 7 11 11 C 1.53779 * 113.61187 * 272.49415 * 10 9 8 12 12 C 1.53783 * 87.08217 * 220.02046 * 11 10 9 13 13 C 1.53779 * 87.08017 * 25.43237 * 12 11 10 14 14 C 1.55153 * 103.02007 * 97.49880 * 4 2 1 15 15 C 1.54912 * 101.58230 * 35.30263 * 14 4 2 16 16 N 1.47014 * 109.88280 * 238.90203 * 2 1 3 17 17 C 1.34775 * 125.64784 * 59.55904 * 16 2 1 18 18 O 1.21284 * 120.00295 * 359.72212 * 17 16 2 19 19 C 1.50708 * 119.99957 * 179.71222 * 17 16 2 20 20 S 1.80998 * 109.47052 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00013 * 180.02562 * 20 19 17 22 22 H 1.07991 * 119.99794 * 0.02562 * 21 20 19 23 23 C 1.38798 * 119.99771 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00311 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99653 * 180.02562 * 23 21 20 26 26 H 1.48511 * 109.47049 * 269.99633 * 25 23 21 27 27 H 1.48494 * 109.47357 * 29.99707 * 25 23 21 28 28 H 1.48502 * 109.47120 * 150.00426 * 25 23 21 29 29 H 1.08994 * 109.46962 * 179.64309 * 1 2 3 30 30 H 1.08996 * 109.46997 * 299.64313 * 1 2 3 31 31 H 1.08993 * 109.46597 * 59.64245 * 1 2 3 32 32 H 1.00899 * 110.99794 * 76.18978 * 6 4 2 33 33 H 1.09003 * 109.46782 * 300.00107 * 7 6 4 34 34 H 1.08998 * 109.46777 * 59.99635 * 7 6 4 35 35 H 1.09003 * 109.47123 * 299.99615 * 8 7 6 36 36 H 1.08993 * 109.46990 * 59.99671 * 8 7 6 37 37 H 1.09003 * 109.46731 * 299.99640 * 9 8 7 38 38 H 1.08999 * 109.47592 * 59.99221 * 9 8 7 39 39 H 1.08996 * 112.85183 * 43.79632 * 10 9 8 40 40 H 1.09001 * 113.61549 * 334.56406 * 11 10 9 41 41 H 1.08998 * 113.61766 * 105.46977 * 11 10 9 42 42 H 1.09001 * 113.61095 * 270.88465 * 12 11 10 43 43 H 1.08996 * 113.69358 * 139.99170 * 12 11 10 44 44 H 1.08998 * 113.61680 * 220.01838 * 13 12 11 45 45 H 1.09003 * 113.61602 * 89.11595 * 13 12 11 46 46 H 1.08994 * 111.00496 * 277.22858 * 14 4 2 47 47 H 1.09003 * 111.03753 * 153.39105 * 14 4 2 48 48 H 1.09002 * 110.36666 * 204.15234 * 15 14 4 49 49 H 1.09008 * 110.36407 * 81.83372 * 15 14 4 50 50 H 1.09005 * 109.46512 * 60.00633 * 19 17 16 51 51 H 1.08991 * 109.47135 * 300.00153 * 19 17 16 52 52 H 0.97001 * 119.99662 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7516 1.2428 5 1 2.9600 -0.2827 1.6226 6 7 1.0230 -0.8102 2.2892 7 6 1.6229 -1.0755 3.6036 8 6 0.5223 -1.1300 4.6650 9 6 1.1473 -1.4056 6.0340 10 6 0.0466 -1.4607 7.0954 11 6 -0.3001 -0.0877 7.6950 12 6 -0.4073 -0.7966 9.0554 13 6 0.5565 -1.8541 8.4918 14 6 2.3561 -2.1697 0.6916 15 6 2.8613 -1.8465 -0.7368 16 7 2.0301 -0.7141 -1.1838 17 6 1.7754 -0.3845 -2.4656 18 8 1.0748 0.5728 -2.7180 19 6 2.3614 -1.2054 -3.5854 20 16 1.8412 -0.5151 -5.1757 21 6 2.6446 -1.6354 -6.2730 22 1 3.2387 -2.4459 -5.8776 23 6 2.5140 -1.4760 -7.6456 24 7 1.7904 -0.4877 -8.1276 25 14 3.3652 -2.6641 -8.8089 26 1 4.7233 -2.1556 -9.1294 27 1 3.4754 -3.9964 -8.1625 28 1 2.5739 -2.7845 -10.0598 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5083 0.8931 31 1 -0.3632 0.5194 -0.8867 32 1 0.3201 -1.4991 2.0668 33 1 2.1490 -2.0299 3.5769 34 1 2.3261 -0.2798 3.8492 35 1 -0.0041 -0.1758 4.6919 36 1 -0.1806 -1.9259 4.4191 37 1 1.6739 -2.3596 6.0075 38 1 1.8500 -0.6095 6.2797 39 1 -0.8248 -2.0301 6.7723 40 1 0.5171 0.6315 7.6406 41 1 -1.2468 0.3181 7.3383 42 1 -1.4038 -1.1836 9.2688 43 1 0.0098 -0.2223 9.8826 44 1 0.3014 -2.8743 8.7784 45 1 1.6080 -1.6178 8.6553 46 1 1.4522 -2.7778 0.6580 47 1 3.1326 -2.6597 1.2790 48 1 2.7178 -2.7049 -1.3931 49 1 3.9124 -1.5589 -0.7113 50 1 2.0110 -2.2343 -3.5034 51 1 3.4492 -1.1857 -3.5196 52 1 1.3481 0.1290 -7.5234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178155928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:41 Heat of formation + Delta-G solvation = -54.817589 kcal Electronic energy + Delta-G solvation = -26692.949881 eV Core-core repulsion = 23010.363424 eV Total energy + Delta-G solvation = -3682.586457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.41515 -39.85760 -39.14167 -36.67217 -34.76069 -34.04168 -32.41491 -31.67360 -29.95308 -27.65553 -27.08406 -26.44767 -26.05155 -24.07957 -23.54401 -22.06177 -21.53160 -20.52449 -20.19663 -19.88734 -18.25782 -17.45136 -17.05456 -16.76992 -16.41755 -16.25908 -15.98832 -15.72683 -15.67112 -15.33309 -14.94490 -14.73559 -14.45986 -14.28556 -14.02682 -13.81584 -13.75768 -13.60022 -13.50120 -13.28047 -13.14102 -13.07466 -12.75652 -12.67326 -12.58547 -12.36875 -12.03782 -11.94784 -11.81401 -11.77664 -11.57592 -11.51802 -11.36256 -11.11570 -10.96610 -10.93797 -10.79728 -10.34138 -9.77250 -9.31258 -8.94052 -8.89561 -6.29594 1.13140 1.48087 1.50651 1.60851 1.79007 1.97100 2.32766 3.01339 3.06290 3.08269 3.43638 3.51587 3.74948 3.81172 3.82280 3.87708 4.00622 4.04217 4.09234 4.14096 4.22474 4.28677 4.29555 4.31854 4.40684 4.52619 4.61688 4.65610 4.72829 4.76456 4.79383 4.85421 4.91188 4.93081 4.95810 4.97304 5.03974 5.06191 5.07854 5.12042 5.16417 5.31597 5.37869 5.44605 5.46860 5.52702 5.62581 5.69255 6.07912 6.13186 6.34352 6.43550 7.04293 7.05929 8.49394 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.039044 B = 0.001549 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.959015 B =18073.221059 C =18529.841692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.137 3.863 3 H 0.059 0.941 4 C 0.098 3.902 5 H 0.105 0.895 6 N -0.682 5.682 7 C 0.063 3.937 8 C -0.110 4.110 9 C -0.102 4.102 10 C -0.110 4.110 11 C -0.140 4.140 12 C -0.147 4.147 13 C -0.139 4.139 14 C -0.148 4.148 15 C 0.090 3.910 16 N -0.613 5.613 17 C 0.545 3.455 18 O -0.562 6.562 19 C -0.099 4.099 20 S -0.195 6.195 21 C -0.614 4.614 22 H 0.075 0.925 23 C -0.018 4.018 24 N -0.913 5.913 25 Si 1.139 2.861 26 H -0.267 1.267 27 H -0.262 1.262 28 H -0.279 1.279 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.348 0.652 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.111 0.889 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.106 0.894 51 H 0.107 0.893 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 -7.373 36.158 36.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.034 3.966 3 H 0.077 0.923 4 C -0.013 4.013 5 H 0.123 0.877 6 N -0.313 5.313 7 C -0.066 4.066 8 C -0.148 4.148 9 C -0.140 4.140 10 C -0.129 4.129 11 C -0.178 4.178 12 C -0.184 4.184 13 C -0.176 4.176 14 C -0.188 4.188 15 C -0.032 4.032 16 N -0.348 5.348 17 C 0.332 3.668 18 O -0.441 6.441 19 C -0.251 4.251 20 S 0.032 5.968 21 C -0.761 4.761 22 H 0.093 0.907 23 C -0.221 4.221 24 N -0.548 5.548 25 Si 0.957 3.043 26 H -0.192 1.192 27 H -0.186 1.186 28 H -0.204 1.204 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.168 0.832 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.130 0.870 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.124 0.876 51 H 0.125 0.875 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.021 -5.586 34.279 34.746 hybrid contribution 0.473 -1.194 1.322 1.843 sum 1.494 -6.781 35.600 36.271 Atomic orbital electron populations 1.21829 0.94626 1.01720 1.01802 1.21609 0.95274 0.95567 0.84190 0.92306 1.22427 0.94867 0.94407 0.89631 0.87679 1.60374 1.13912 1.55507 1.01529 1.22006 0.96860 1.00099 0.87623 1.21476 0.97693 1.02027 0.93627 1.21472 0.97292 1.01896 0.93366 1.22549 0.98738 0.97289 0.94296 1.22996 1.01671 0.96596 0.96526 1.22841 1.00070 0.98377 0.97132 1.22958 0.99601 0.99070 0.95962 1.23479 1.03271 0.97616 0.94406 1.22594 0.95348 0.88469 0.96793 1.48521 1.50907 1.31612 1.03731 1.19688 0.80093 0.84124 0.82856 1.90679 1.39558 1.30229 1.83608 1.23157 1.04526 1.02687 0.94703 1.85074 1.69075 1.43971 0.98687 1.24045 1.38901 1.17483 0.95669 0.90722 1.27858 0.95900 1.00007 0.98358 1.70890 1.29821 1.15415 1.38674 0.82686 0.75378 0.73095 0.73140 1.19224 1.18624 1.20383 0.92705 0.89053 0.95553 0.83215 0.94054 0.91093 0.92122 0.92089 0.91553 0.91800 0.89589 0.90153 0.92047 0.90224 0.91437 0.91512 0.89919 0.90167 0.87022 0.90053 0.89564 0.87568 0.87516 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.19 71.98 0.59 -3.05 16 2 C 0.14 3.30 3.49 45.35 0.16 3.46 16 3 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.10 1.42 3.10 46.11 0.14 1.56 16 5 H 0.11 1.35 7.89 -2.39 -0.02 1.33 16 6 N -0.68 -8.52 4.89 -485.44 -2.37 -10.90 16 7 C 0.06 0.58 5.54 86.30 0.48 1.06 16 8 C -0.11 -0.99 5.47 30.59 0.17 -0.83 16 9 C -0.10 -0.80 5.05 30.59 0.15 -0.65 16 10 C -0.11 -0.96 3.65 -10.27 -0.04 -1.00 16 11 C -0.14 -1.33 7.63 31.12 0.24 -1.09 16 12 C -0.15 -1.27 8.08 31.12 0.25 -1.02 16 13 C -0.14 -1.14 7.64 31.12 0.24 -0.90 16 14 C -0.15 -1.77 6.63 31.99 0.21 -1.56 16 15 C 0.09 1.66 6.69 86.86 0.58 2.24 16 16 N -0.61 -17.21 3.08 -788.02 -2.43 -19.64 16 17 C 0.54 21.53 7.65 87.66 0.67 22.20 16 18 O -0.56 -27.36 14.75 -3.04 -0.04 -27.40 16 19 C -0.10 -4.14 5.16 71.24 0.37 -3.77 16 20 S -0.19 -11.02 19.60 -56.49 -1.11 -12.12 16 21 C -0.61 -35.87 9.50 67.95 0.65 -35.23 16 22 H 0.07 4.09 7.80 -2.92 -0.02 4.07 16 23 C -0.02 -1.06 5.49 84.86 0.47 -0.60 16 24 N -0.91 -58.64 13.67 21.65 0.30 -58.34 16 25 Si 1.14 49.61 29.92 68.60 2.05 51.67 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 28 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 29 H 0.05 1.29 7.84 -2.39 -0.02 1.27 16 30 H 0.09 2.03 7.45 -2.39 -0.02 2.01 16 31 H 0.03 0.89 6.74 -2.39 -0.02 0.87 16 32 H 0.35 4.16 7.54 -89.69 -0.68 3.48 16 33 H 0.04 0.31 8.13 -2.39 -0.02 0.29 16 34 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.52 7.85 -2.39 -0.02 0.50 16 39 H 0.09 0.79 8.13 -2.39 -0.02 0.77 16 40 H 0.08 0.76 7.90 -2.39 -0.02 0.74 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.08 0.63 8.10 -2.39 -0.02 0.61 16 46 H 0.08 0.97 7.81 -2.39 -0.02 0.95 16 47 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.08 1.49 7.48 -2.39 -0.02 1.47 16 49 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 50 H 0.11 4.05 7.85 -2.39 -0.02 4.03 16 51 H 0.11 4.06 8.14 -2.40 -0.02 4.05 16 52 H 0.26 17.44 7.12 -92.71 -0.66 16.78 16 Total: -1.00 -77.30 419.47 2.03 -75.28 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.31 Total: 20.62 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 5.32 Total: -19.17 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -4.50 Total: -88.87 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.04 Total: -27.40 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.05 Total: 51.67 kcal Atomic # 16 Polarization: -11.02 SS G_CDS: -1.11 Total: -12.12 kcal Total: -77.30 2.03 -75.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178155928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.459 kcal (2) G-P(sol) polarization free energy of solvation -77.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds