Wall clock time and date at job start Tue Mar 31 2020 23:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47195 * 2 1 4 4 N 1.46505 * 109.47121 * 119.99768 * 2 1 3 5 5 C 1.34777 * 120.00168 * 274.99920 * 4 2 1 6 6 O 1.21287 * 119.99607 * 0.02562 * 5 4 2 7 7 C 1.50692 * 120.00068 * 179.97438 * 5 4 2 8 8 S 1.80999 * 109.47275 * 180.02562 * 7 5 4 9 9 C 1.76201 * 100.00238 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99986 * 0.02562 * 9 8 7 11 11 C 1.38801 * 119.99858 * 179.97438 * 9 8 7 12 12 N 1.31629 * 120.00056 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99913 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47140 * 89.99970 * 13 11 9 15 15 H 1.48495 * 109.47284 * 210.00110 * 13 11 9 16 16 H 1.48498 * 109.46937 * 330.00068 * 13 11 9 17 17 C 1.53003 * 109.47373 * 239.99923 * 2 1 3 18 18 C 1.53513 * 114.16862 * 174.86957 * 17 2 1 19 19 N 1.47482 * 87.92938 * 220.32851 * 18 17 2 20 20 C 1.46904 * 110.99438 * 138.70847 * 19 18 17 21 21 C 1.52999 * 109.46717 * 170.00207 * 20 19 18 22 22 C 1.53005 * 109.47000 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.47066 * 179.97438 * 22 21 20 24 24 C 1.53778 * 113.61379 * 184.99476 * 23 22 21 25 25 C 1.53779 * 87.17526 * 220.06237 * 24 23 22 26 26 C 1.53784 * 87.07772 * 25.39312 * 25 24 23 27 27 C 1.47479 * 87.83470 * 27.01386 * 19 18 17 28 28 H 1.09006 * 109.46761 * 184.93856 * 1 2 3 29 29 H 1.08999 * 109.47188 * 304.94074 * 1 2 3 30 30 H 1.08993 * 109.47017 * 64.94196 * 1 2 3 31 31 H 0.96995 * 119.99757 * 95.00254 * 4 2 1 32 32 H 1.09002 * 109.47577 * 300.00211 * 7 5 4 33 33 H 1.08993 * 109.47121 * 60.00409 * 7 5 4 34 34 H 0.97001 * 120.00015 * 180.02562 * 12 11 9 35 35 H 1.08999 * 113.37883 * 307.95100 * 17 2 1 36 36 H 1.09004 * 113.47211 * 105.56441 * 18 17 2 37 37 H 1.09001 * 113.53386 * 335.10891 * 18 17 2 38 38 H 1.08998 * 109.47204 * 50.00218 * 20 19 18 39 39 H 1.09001 * 109.46792 * 289.99572 * 20 19 18 40 40 H 1.08997 * 109.47780 * 59.99477 * 21 20 19 41 41 H 1.09007 * 109.47144 * 299.99687 * 21 20 19 42 42 H 1.08998 * 109.46986 * 59.99970 * 22 21 20 43 43 H 1.09001 * 109.46727 * 299.99498 * 22 21 20 44 44 H 1.08994 * 112.90734 * 316.25185 * 23 22 21 45 45 H 1.09003 * 113.60925 * 105.47210 * 24 23 22 46 46 H 1.09000 * 113.61810 * 334.66024 * 24 23 22 47 47 H 1.09001 * 113.61182 * 139.93813 * 25 24 23 48 48 H 1.08997 * 113.61247 * 270.84641 * 25 24 23 49 49 H 1.09003 * 113.61522 * 89.11738 * 26 25 24 50 50 H 1.09005 * 113.61038 * 219.93162 * 26 25 24 51 51 H 1.08999 * 113.47431 * 87.75835 * 27 19 18 52 52 H 1.08996 * 113.47037 * 218.22133 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6488 -0.7287 3.5878 8 16 2.7092 0.4342 4.9734 9 6 3.3125 -0.6310 6.2408 10 1 3.5226 -1.6672 6.0206 11 6 3.5187 -0.1380 7.5218 12 7 3.2632 1.1251 7.7900 13 14 4.1577 -1.2673 8.8656 14 1 5.6421 -1.2291 8.8800 15 1 3.6380 -0.8149 10.1810 16 1 3.7008 -2.6558 8.6039 17 6 2.0401 -0.7213 -1.2492 18 6 3.5647 -0.6766 -1.4223 19 7 3.3412 -0.4649 -2.8646 20 6 4.2688 0.5412 -3.3989 21 6 4.1815 0.5551 -4.9263 22 6 5.1471 1.6033 -5.4828 23 6 5.0603 1.6168 -7.0104 24 6 6.0817 2.5532 -7.6772 25 6 4.9655 2.9473 -8.6587 26 6 3.9664 2.5509 -7.5589 27 6 2.0437 0.1441 -2.5171 28 1 -0.3633 -1.0239 0.0885 29 1 -0.3633 0.5886 0.8424 30 1 -0.3633 0.4352 -0.9309 31 1 2.2490 -1.6317 1.1527 32 1 1.9760 -1.5505 3.8327 33 1 3.6479 -1.1212 3.3987 34 1 3.4076 1.4697 8.6851 35 1 1.6042 -1.7110 -1.3855 36 1 4.0556 -1.6225 -1.1932 37 1 4.0344 0.1729 -0.9263 38 1 5.2862 0.2949 -3.0953 39 1 4.0016 1.5241 -3.0108 40 1 3.1641 0.8013 -5.2300 41 1 4.4486 -0.4279 -5.3145 42 1 6.1647 1.3574 -5.1793 43 1 4.8795 2.5861 -5.0947 44 1 5.0375 0.6165 -7.4428 45 1 6.9125 2.0281 -8.1487 46 1 6.4079 3.3715 -7.0354 47 1 4.9509 4.0103 -8.8993 48 1 4.9168 2.3114 -9.5427 49 1 3.7132 3.3683 -6.8838 50 1 3.0887 2.0254 -7.9352 51 1 2.1065 1.2130 -2.3132 52 1 1.2456 -0.1062 -3.2160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329972065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:21 Heat of formation + Delta-G solvation = -6.844679 kcal Electronic energy + Delta-G solvation = -26307.827371 eV Core-core repulsion = 22627.321175 eV Total energy + Delta-G solvation = -3680.506195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.78652 -39.36016 -38.95637 -35.51308 -34.06391 -32.43006 -31.46505 -29.47838 -28.46962 -26.28927 -26.15239 -25.92185 -25.47578 -23.50747 -21.89541 -21.21897 -20.34861 -19.85879 -19.73688 -17.83642 -16.55683 -16.45191 -16.16444 -16.06807 -15.44568 -15.22429 -14.98786 -14.80543 -14.65169 -14.41623 -14.02699 -13.56065 -13.20851 -13.11401 -13.01893 -12.86248 -12.80761 -12.70840 -12.55342 -12.48661 -11.96838 -11.82052 -11.62071 -11.53090 -11.23064 -11.07498 -11.04716 -11.02447 -10.90513 -10.88386 -10.75711 -10.69795 -10.48148 -10.28571 -9.81357 -9.39132 -9.23037 -9.06941 -8.84661 -8.23566 -6.49980 -6.21843 -3.92284 3.01603 3.10614 3.22194 3.27568 3.31493 3.63386 3.66741 4.15998 4.20466 4.22888 4.25556 4.31448 4.43575 4.44938 4.63314 4.75915 4.89712 4.96947 4.98002 5.13283 5.13482 5.15230 5.19383 5.23094 5.26750 5.31472 5.33781 5.35070 5.38638 5.44359 5.48268 5.50797 5.54136 5.56510 5.59627 5.60503 5.70212 5.75022 5.84035 5.89588 5.93209 5.96692 6.06060 6.10624 6.13993 6.14692 6.23337 6.67392 6.76437 7.59491 7.74145 8.35112 8.63414 9.23588 10.85583 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.001570 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.624150 B =17825.561503 C =18428.214228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.085 0.915 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.519 6.519 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.124 4.124 18 C 0.005 3.995 19 N -0.473 5.473 20 C 0.017 3.983 21 C -0.106 4.106 22 C -0.110 4.110 23 C -0.109 4.109 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.138 4.138 27 C 0.009 3.991 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.064 0.936 51 H 0.072 0.928 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 -2.411 -30.887 30.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 H 0.104 0.896 4 N -0.387 5.387 5 C 0.319 3.681 6 O -0.393 6.393 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.143 4.143 18 C -0.124 4.124 19 N -0.195 5.195 20 C -0.112 4.112 21 C -0.144 4.144 22 C -0.148 4.148 23 C -0.128 4.128 24 C -0.177 4.177 25 C -0.182 4.182 26 C -0.175 4.175 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.083 0.917 51 H 0.091 0.909 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.449 -0.829 -31.154 31.169 hybrid contribution 0.925 -1.798 1.296 2.402 sum 1.374 -2.627 -29.858 30.005 Atomic orbital electron populations 1.22154 0.95195 1.02290 1.02429 1.20841 0.94191 0.96969 0.83084 0.89645 1.46035 1.69296 1.13930 1.09392 1.20301 0.76786 0.87213 0.83764 1.90696 1.48397 1.15814 1.84410 1.23532 1.03648 1.04850 0.98394 1.85385 1.86301 1.12944 0.98793 1.22872 1.50941 0.98178 0.96392 0.90942 1.24987 0.95088 0.95537 0.97941 1.70019 1.45494 1.13246 1.21547 0.86172 0.78993 0.80209 0.80149 1.20283 1.20747 1.19691 1.23046 0.96379 1.00686 0.94179 1.23807 0.96462 1.02740 0.89399 1.68883 1.02962 1.33345 1.14300 1.22743 0.97697 0.94338 0.96393 1.21425 0.99729 0.99371 0.93881 1.21564 0.99678 0.99275 0.94311 1.22576 0.96676 0.98430 0.95079 1.22953 0.96781 0.99562 0.98400 1.22812 0.96965 1.01255 0.97187 1.23013 0.96950 0.99410 0.98153 1.23885 0.94351 0.97797 0.95976 0.92434 0.91661 0.91937 0.76865 0.89252 0.89291 0.92198 0.87514 0.89589 0.90939 0.90984 0.93603 0.92034 0.91398 0.91858 0.91966 0.89327 0.91695 0.90162 0.91620 0.90358 0.90183 0.91683 0.90949 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.47 37.16 0.35 -1.38 16 2 C 0.15 1.72 2.34 -67.93 -0.16 1.57 16 3 H 0.09 1.14 7.44 -51.93 -0.39 0.75 16 4 N -0.73 -9.38 4.96 -53.80 -0.27 -9.64 16 5 C 0.53 9.70 7.81 -10.99 -0.09 9.62 16 6 O -0.52 -11.54 15.53 5.55 0.09 -11.46 16 7 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 8 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 9 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 10 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 13 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C -0.12 -1.06 3.49 -90.09 -0.31 -1.37 16 18 C 0.00 0.04 7.14 -7.55 -0.05 -0.01 16 19 N -0.47 -4.23 6.33 -244.64 -1.55 -5.78 16 20 C 0.02 0.14 4.82 -3.82 -0.02 0.12 16 21 C -0.11 -0.76 5.53 -26.73 -0.15 -0.91 16 22 C -0.11 -0.71 5.05 -26.73 -0.14 -0.84 16 23 C -0.11 -0.66 3.66 -89.72 -0.33 -0.99 16 24 C -0.14 -0.80 7.64 -25.92 -0.20 -1.00 16 25 C -0.14 -0.79 8.09 -25.92 -0.21 -1.00 16 26 C -0.14 -0.81 7.64 -25.83 -0.20 -1.01 16 27 C 0.01 0.08 7.26 -7.55 -0.05 0.02 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 32 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 33 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 38 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 39 H 0.05 0.39 7.30 -51.93 -0.38 0.01 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.41 7.85 -51.93 -0.41 0.00 16 44 H 0.09 0.54 8.13 -51.93 -0.42 0.12 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.48 7.90 -51.93 -0.41 0.07 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.07 0.61 7.28 -51.93 -0.38 0.23 16 52 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 429.34 15.07 6.47 6.47 Total: -1.00 -33.12 429.34 -12.76 -45.88 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -9.87 Total: 0.41 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.13 Total: -12.96 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -1.08 Total: -40.84 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -33.12 -12.76 -45.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329972065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.032 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds