Wall clock time and date at job start Tue Mar 31 2020 23:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99910 * 2 1 4 4 H 1.48498 * 109.47417 * 240.00273 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46989 * 120.00053 * 3 2 1 7 7 C 1.38815 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99453 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99819 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46979 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47084 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.47208 * 180.02562 * 12 11 10 14 14 C 1.42905 * 114.00062 * 179.97438 * 13 12 11 15 15 C 1.53037 * 109.45952 * 150.00033 * 14 13 12 16 16 C 1.53191 * 109.31174 * 181.37256 * 15 14 13 17 17 N 1.46924 * 108.77327 * 305.36246 * 16 15 14 18 18 C 1.34777 * 120.62813 * 233.58228 * 17 16 15 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99675 * 179.72946 * 18 17 16 21 21 C 1.53004 * 109.47208 * 180.27843 * 20 18 17 22 22 H 1.09004 * 110.27282 * 54.29804 * 21 20 18 23 23 C 1.54943 * 110.31142 * 176.38715 * 21 20 18 24 24 C 1.55412 * 100.89272 * 155.28678 * 23 21 20 25 25 C 1.54380 * 102.31062 * 325.99167 * 24 23 21 26 26 O 1.43239 * 107.59000 * 21.28550 * 25 24 23 27 27 C 1.46921 * 118.73733 * 53.86655 * 17 16 15 28 28 C 1.53041 * 109.44792 * 270.05832 * 14 13 12 29 29 H 0.96996 * 119.99813 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00154 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47491 * 59.99347 * 10 9 7 32 32 H 1.08998 * 109.46764 * 299.99253 * 10 9 7 33 33 H 1.09000 * 109.46776 * 59.99709 * 11 10 9 34 34 H 1.09001 * 109.47120 * 299.99957 * 11 10 9 35 35 H 1.08998 * 109.47326 * 59.99719 * 12 11 10 36 36 H 1.09001 * 109.47219 * 300.00033 * 12 11 10 37 37 H 1.08995 * 109.45952 * 30.02669 * 14 13 12 38 38 H 1.09008 * 109.50055 * 61.41676 * 15 14 13 39 39 H 1.08998 * 109.49860 * 301.32404 * 15 14 13 40 40 H 1.09006 * 109.58153 * 185.57630 * 16 15 14 41 41 H 1.08997 * 109.58756 * 65.15178 * 16 15 14 42 42 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 43 43 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 44 44 H 1.09000 * 111.12616 * 273.27964 * 23 21 20 45 45 H 1.09008 * 111.12382 * 37.44190 * 23 21 20 46 46 H 1.09005 * 110.88286 * 207.75686 * 24 23 21 47 47 H 1.08999 * 110.76170 * 84.17138 * 24 23 21 48 48 H 1.08998 * 109.83464 * 261.77204 * 25 24 23 49 49 H 1.09000 * 109.82922 * 140.79733 * 25 24 23 50 50 H 1.09000 * 109.59076 * 65.92234 * 27 17 16 51 51 H 1.09000 * 109.58577 * 186.34777 * 27 17 16 52 52 H 1.08990 * 109.50248 * 298.57646 * 28 14 13 53 53 H 1.09006 * 109.49265 * 58.63852 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 6 1.8289 -6.1447 -0.0005 13 8 0.9004 -7.2309 -0.0005 14 6 1.5149 -8.5210 -0.0017 15 6 0.6065 -9.5192 0.7198 16 6 1.2838 -10.8929 0.7466 17 7 1.6295 -11.2766 -0.6289 18 6 1.2254 -12.4590 -1.1340 19 8 0.5696 -13.2177 -0.4519 20 6 1.5829 -12.8356 -2.5488 21 6 1.0011 -14.2132 -2.8724 22 1 -0.0708 -14.2265 -2.6745 23 6 1.2794 -14.5806 -4.3517 24 6 1.2286 -16.1324 -4.2835 25 6 1.8091 -16.4194 -2.8821 26 8 1.6632 -15.2278 -2.1007 27 6 2.4293 -10.3497 -1.4410 28 6 1.7344 -8.9796 -1.4452 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0002 31 1 2.6849 -3.7145 0.8893 32 1 2.6847 -3.7145 -0.8906 33 1 0.4369 -4.7621 -0.8896 34 1 0.4376 -4.7618 0.8903 35 1 2.4563 -6.2025 0.8889 36 1 2.4549 -6.2024 -0.8910 37 1 2.4747 -8.4665 0.5119 38 1 -0.3446 -9.5926 0.1924 39 1 0.4316 -9.1798 1.7407 40 1 0.6006 -11.6289 1.1706 41 1 2.1898 -10.8419 1.3504 42 1 1.1713 -12.0967 -3.2365 43 1 2.6673 -12.8654 -2.6539 44 1 0.5013 -14.1889 -5.0068 45 1 2.2646 -14.2338 -4.6639 46 1 1.8519 -16.5760 -5.0599 47 1 0.2013 -16.4889 -4.3582 48 1 2.8642 -16.6802 -2.9652 49 1 1.2605 -17.2373 -2.4150 50 1 3.4269 -10.2553 -1.0119 51 1 2.5022 -10.7271 -2.4610 52 1 0.7729 -9.0581 -1.9522 53 1 2.3619 -8.2558 -1.9654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570783178.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:04 Heat of formation + Delta-G solvation = -152.044218 kcal Electronic energy + Delta-G solvation = -29224.383230 eV Core-core repulsion = 25094.827839 eV Total energy + Delta-G solvation = -4129.555391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.42992 -40.24980 -39.42048 -37.66897 -36.78117 -34.33877 -33.70539 -32.98381 -32.50043 -31.88228 -31.21694 -27.92291 -26.93531 -25.49792 -24.48193 -24.04914 -22.83028 -22.47700 -22.36553 -21.56663 -19.93017 -19.12704 -18.39041 -17.90776 -17.56395 -17.08385 -16.78146 -16.62171 -16.54456 -16.35682 -15.71207 -15.63212 -15.38871 -15.23176 -15.05719 -14.82782 -14.61487 -14.25717 -14.08073 -13.82587 -13.52727 -13.36212 -13.27493 -12.97900 -12.87082 -12.82105 -12.61116 -12.45622 -12.43461 -12.33095 -12.10726 -12.09131 -12.07360 -12.04748 -11.79088 -11.72307 -11.65361 -11.47452 -10.92921 -10.80437 -10.45943 -10.37160 -9.72121 -9.02351 -7.95402 -5.25743 1.48241 1.52050 1.58276 1.64148 1.97187 2.51408 2.66880 2.89079 3.38212 3.48427 3.56898 3.74217 3.77072 3.87513 3.97370 4.01767 4.02071 4.10019 4.13140 4.18870 4.25276 4.29575 4.30640 4.38238 4.43946 4.48895 4.57929 4.60945 4.65847 4.70401 4.73325 4.77683 4.78685 4.82512 4.83977 4.84478 4.92412 4.98747 5.01817 5.06144 5.12886 5.24986 5.28197 5.33587 5.34214 5.48833 5.52407 6.15917 6.25740 6.34989 6.38951 7.18674 7.32114 8.07573 8.30553 9.28212 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031742 B = 0.001412 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.894607 B =19831.017460 C =20264.515029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.252 4.252 8 H 0.079 0.921 9 N -0.750 5.750 10 C 0.155 3.845 11 C -0.114 4.114 12 C 0.078 3.922 13 O -0.402 6.402 14 C 0.085 3.915 15 C -0.124 4.124 16 C 0.118 3.882 17 N -0.616 5.616 18 C 0.509 3.491 19 O -0.581 6.581 20 C -0.135 4.135 21 C 0.087 3.913 22 H 0.054 0.946 23 C -0.144 4.144 24 C -0.152 4.152 25 C 0.038 3.962 26 O -0.402 6.402 27 C 0.110 3.890 28 C -0.154 4.154 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.136 0.864 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.116 0.884 52 H 0.065 0.935 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.895 -34.549 -9.968 36.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.383 4.383 8 H 0.097 0.903 9 N -0.393 5.393 10 C 0.029 3.971 11 C -0.152 4.152 12 C 0.001 3.999 13 O -0.322 6.322 14 C 0.027 3.973 15 C -0.163 4.163 16 C -0.005 4.005 17 N -0.350 5.350 18 C 0.299 3.701 19 O -0.460 6.460 20 C -0.174 4.174 21 C 0.030 3.970 22 H 0.072 0.928 23 C -0.181 4.181 24 C -0.189 4.189 25 C -0.038 4.038 26 O -0.322 6.322 27 C -0.012 4.012 28 C -0.192 4.192 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.154 0.846 43 H 0.140 0.860 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.120 0.880 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.109 0.891 51 H 0.134 0.866 52 H 0.083 0.917 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.589 -34.805 -9.400 36.843 hybrid contribution -0.358 1.047 0.258 1.136 sum 7.232 -33.759 -9.142 35.714 Atomic orbital electron populations 1.69831 1.06795 1.26269 1.59272 1.25653 0.96438 1.01385 1.03422 0.85142 0.77153 0.78703 0.78332 1.20097 1.22145 1.20228 1.19660 0.91686 0.85283 1.41712 0.90263 1.42601 1.05709 1.01397 1.89604 1.20671 0.93802 0.84398 0.98220 1.21484 0.98641 0.92949 1.02134 1.22347 0.91282 0.84940 1.01326 1.87916 1.34733 1.14339 1.95247 1.22204 0.96484 0.82356 0.96237 1.21911 0.98953 0.93645 1.01783 1.21494 1.00702 0.95025 0.83298 1.48321 1.53947 1.18138 1.14584 1.21238 0.78254 0.80305 0.90317 1.90701 1.41136 1.51556 1.62617 1.21995 1.05103 0.97533 0.92780 1.22803 0.95877 0.87292 0.91059 0.92847 1.23352 1.04678 0.95579 0.94512 1.23140 1.02636 0.96341 0.96831 1.23292 1.01285 0.87628 0.91581 1.88511 1.79716 1.23657 1.40357 1.22052 0.94259 0.87483 0.97370 1.22487 1.02238 0.97522 0.96973 0.93952 0.79579 0.95646 0.95339 0.92280 0.92549 0.92124 0.91592 0.90497 0.92405 0.89897 0.90430 0.89745 0.84642 0.86024 0.88123 0.88462 0.87975 0.90521 0.90488 0.92153 0.89150 0.86581 0.91660 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 2 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 3 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.75 -39.18 5.60 -343.45 -1.92 -41.10 16 10 C 0.16 6.15 6.26 86.38 0.54 6.70 16 11 C -0.11 -3.77 5.70 30.59 0.17 -3.59 16 12 C 0.08 1.91 5.75 71.98 0.41 2.32 16 13 O -0.40 -10.12 9.99 -148.98 -1.49 -11.60 16 14 C 0.08 1.50 2.57 30.62 0.08 1.57 16 15 C -0.12 -2.28 5.73 30.67 0.18 -2.10 16 16 C 0.12 2.02 6.43 86.36 0.56 2.58 16 17 N -0.62 -9.69 2.97 -818.07 -2.43 -12.12 16 18 C 0.51 10.01 7.61 87.66 0.67 10.68 16 19 O -0.58 -17.21 14.98 6.50 0.10 -17.11 16 20 C -0.13 -1.49 3.78 29.85 0.11 -1.38 16 21 C 0.09 1.27 2.91 31.26 0.09 1.36 16 22 H 0.05 1.00 7.96 -2.39 -0.02 0.99 16 23 C -0.14 -0.98 6.58 32.09 0.21 -0.77 16 24 C -0.15 -1.13 7.02 31.89 0.22 -0.91 16 25 C 0.04 0.50 7.80 72.45 0.56 1.06 16 26 O -0.40 -8.22 10.50 -139.45 -1.46 -9.68 16 27 C 0.11 0.99 6.37 86.51 0.55 1.54 16 28 C -0.15 -2.03 5.71 30.82 0.18 -1.85 16 29 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.37 20.84 7.67 -92.71 -0.71 20.13 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 36 H 0.07 1.38 7.84 -2.39 -0.02 1.36 16 37 H 0.08 1.14 7.79 -2.39 -0.02 1.12 16 38 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.67 7.01 -2.38 -0.02 1.65 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.14 0.68 7.70 -2.38 -0.02 0.67 16 43 H 0.12 0.85 7.93 -2.39 -0.02 0.84 16 44 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.10 0.37 8.06 -2.38 -0.02 0.35 16 46 H 0.10 0.36 8.14 -2.38 -0.02 0.35 16 47 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.12 0.42 5.93 -2.39 -0.01 0.41 16 52 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.09 1.04 7.84 -2.38 -0.02 1.03 16 Total: -1.00 -78.81 417.59 1.11 -77.70 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.16 Total: 26.09 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.84 Total: -0.19 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -4.07 Total: -113.29 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -2.85 Total: -38.40 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -78.81 1.11 -77.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570783178.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.346 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds