Wall clock time and date at job start Tue Mar 31 2020 23:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.37213 * 2 1 4 4 N 1.46494 * 109.47246 * 302.19664 * 3 2 1 5 5 C 1.36937 * 119.99998 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00315 * 359.97438 * 5 4 3 7 7 C 1.38815 * 120.00058 * 179.97438 * 5 4 3 8 8 N 1.31621 * 120.00138 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00085 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46814 * 90.00003 * 9 7 5 11 11 H 1.48500 * 109.47209 * 210.00186 * 9 7 5 12 12 H 1.48501 * 109.46964 * 330.00041 * 9 7 5 13 13 C 1.54620 * 110.32683 * 237.81860 * 2 1 3 14 14 C 1.54606 * 102.90938 * 262.80399 * 13 2 1 15 15 N 1.48119 * 103.41940 * 322.86747 * 14 13 2 16 16 C 1.34777 * 127.02859 * 219.28298 * 15 14 13 17 17 O 1.21278 * 119.99854 * 179.68161 * 16 15 14 18 18 C 1.50703 * 120.00161 * 359.68854 * 16 15 14 19 19 C 1.53000 * 109.46912 * 179.97438 * 18 16 15 20 20 O 1.42903 * 109.46726 * 179.97438 * 19 18 16 21 21 C 1.42899 * 113.99629 * 180.02562 * 20 19 18 22 22 C 1.53182 * 109.54395 * 269.55771 * 21 20 19 23 23 C 1.53098 * 109.16423 * 183.15700 * 22 21 20 24 24 O 1.42897 * 109.41538 * 57.60457 * 23 22 21 25 25 C 1.42904 * 114.10152 * 298.84385 * 24 23 22 26 26 C 1.53091 * 109.41507 * 61.15675 * 25 24 23 27 27 C 1.47480 * 105.93622 * 39.02444 * 15 14 13 28 28 H 1.08998 * 109.46781 * 297.80208 * 1 2 3 29 29 H 1.08996 * 109.47450 * 57.80619 * 1 2 3 30 30 H 1.09003 * 109.46536 * 177.81023 * 1 2 3 31 31 H 1.09004 * 109.47108 * 62.19032 * 3 2 1 32 32 H 1.09003 * 109.47407 * 182.19209 * 3 2 1 33 33 H 0.96999 * 120.00443 * 359.97438 * 4 3 2 34 34 H 0.97001 * 119.99775 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.74126 * 21.28300 * 13 2 1 36 36 H 1.08998 * 110.74314 * 144.43685 * 13 2 1 37 37 H 1.09003 * 110.61616 * 204.34959 * 14 13 2 38 38 H 1.08996 * 110.54542 * 81.34244 * 14 13 2 39 39 H 1.09001 * 109.46980 * 59.99654 * 18 16 15 40 40 H 1.08992 * 109.47158 * 299.99760 * 18 16 15 41 41 H 1.09002 * 109.47398 * 300.00078 * 19 18 16 42 42 H 1.09001 * 109.47194 * 60.00258 * 19 18 16 43 43 H 1.08998 * 109.54689 * 29.82170 * 21 20 19 44 44 H 1.09006 * 109.52267 * 303.05601 * 22 21 20 45 45 H 1.08997 * 109.52141 * 63.24725 * 22 21 20 46 46 H 1.09005 * 109.47730 * 297.62587 * 23 22 21 47 47 H 1.08996 * 109.47865 * 177.58958 * 23 22 21 48 48 H 1.09000 * 109.47701 * 301.17696 * 25 24 23 49 49 H 1.08996 * 109.48323 * 181.14230 * 25 24 23 50 50 H 1.08997 * 109.52591 * 182.48532 * 26 25 24 51 51 H 1.09002 * 109.52152 * 62.30064 * 26 25 24 52 52 H 1.09003 * 109.91441 * 94.13832 * 27 15 14 53 53 H 1.08993 * 109.91611 * 215.41929 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 7 1.5428 2.1483 -1.1688 5 6 1.8860 3.4570 -1.3802 6 1 2.5397 3.9629 -0.6852 7 6 1.3938 4.1334 -2.4880 8 7 1.7242 5.3911 -2.6915 9 14 0.2638 3.2582 -3.6907 10 1 -1.1473 3.4377 -3.2642 11 1 0.4472 3.8307 -5.0486 12 1 0.5931 1.8104 -3.7154 13 6 2.0671 -0.7722 -1.2272 14 6 2.3641 -2.1752 -0.6495 15 7 2.8805 -1.8857 0.7082 16 6 3.8924 -2.5107 1.3421 17 8 4.2153 -2.1635 2.4584 18 6 4.6228 -3.6410 0.6638 19 6 5.7173 -4.1709 1.5923 20 8 6.4095 -5.2431 0.9493 21 6 7.4576 -5.8128 1.7359 22 6 8.7719 -5.0815 1.4454 23 6 9.9030 -5.7488 2.2323 24 8 9.9795 -7.1302 1.8750 25 6 8.7956 -7.8752 2.1676 26 6 7.6201 -7.2933 1.3781 27 6 2.0651 -0.7694 1.2221 28 1 -0.3633 0.4793 0.9090 29 1 -0.3634 0.5475 -0.8696 30 1 -0.3632 -1.0270 -0.0393 31 1 1.7396 1.9418 0.9090 32 1 3.1518 1.4175 -0.0393 33 1 0.9554 1.6941 -1.7929 34 1 1.3805 5.8636 -3.4658 35 1 1.3105 -0.8276 -2.0098 36 1 2.9788 -0.3099 -1.6055 37 1 3.1195 -2.6846 -1.2479 38 1 1.4509 -2.7678 -0.5953 39 1 5.0742 -3.2793 -0.2601 40 1 3.9203 -4.4424 0.4354 41 1 6.4199 -3.3693 1.8204 42 1 5.2663 -4.5326 2.5164 43 1 7.2124 -5.7181 2.7937 44 1 8.9900 -5.1342 0.3787 45 1 8.6830 -4.0384 1.7489 46 1 9.7042 -5.6601 3.3004 47 1 10.8478 -5.2593 1.9963 48 1 8.5824 -7.8143 3.2348 49 1 8.9429 -8.9175 1.8851 50 1 6.7076 -7.8320 1.6334 51 1 7.8149 -7.3907 0.3101 52 1 1.2332 -1.1572 1.8100 53 1 2.6809 -0.1110 1.8347 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716878055.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:50 Heat of formation + Delta-G solvation = -144.738717 kcal Electronic energy + Delta-G solvation = -29900.542903 eV Core-core repulsion = 25771.304303 eV Total energy + Delta-G solvation = -4129.238600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.39090 -40.60626 -39.50790 -38.41957 -36.63254 -34.49135 -33.99927 -32.72824 -32.12832 -31.84437 -30.60332 -27.98653 -27.56926 -25.59242 -24.82658 -24.52703 -23.87566 -23.58766 -21.43844 -20.52452 -20.09341 -19.49604 -18.48866 -17.71525 -17.47765 -17.05771 -16.85745 -16.75781 -16.45864 -16.29692 -15.88548 -15.76627 -15.33139 -15.15575 -15.08573 -15.02910 -14.60597 -14.33128 -14.23841 -14.11434 -13.55901 -13.46005 -13.37515 -13.23420 -13.05124 -12.96562 -12.84875 -12.69496 -12.59843 -12.34890 -12.16604 -12.12603 -11.96344 -11.82633 -11.71869 -11.55143 -11.42786 -11.38235 -11.02800 -10.98127 -10.69808 -10.53339 -9.77380 -9.30974 -8.03135 -5.37281 1.36450 1.42415 1.49641 1.51899 1.75632 2.48539 2.59255 2.93272 3.26656 3.31498 3.60150 3.64012 3.71150 3.71607 3.76670 3.93294 3.95044 4.00691 4.02889 4.12173 4.22619 4.23976 4.29616 4.34126 4.39818 4.45414 4.52852 4.63865 4.66678 4.70203 4.71989 4.74304 4.77624 4.79835 4.83453 4.87590 4.90855 4.97929 5.02479 5.07448 5.09412 5.17714 5.18584 5.22983 5.32171 5.49458 5.74053 6.13543 6.19997 6.20033 6.48506 7.03419 7.07458 7.81523 8.04620 9.18628 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.001813 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.034374 B =15441.483209 C =15880.081006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C 0.170 3.830 4 N -0.747 5.747 5 C -0.238 4.238 6 H 0.048 0.952 7 C -0.066 4.066 8 N -0.986 5.986 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.297 1.297 12 H -0.242 1.242 13 C -0.126 4.126 14 C 0.104 3.896 15 N -0.619 5.619 16 C 0.531 3.469 17 O -0.590 6.590 18 C -0.124 4.124 19 C 0.081 3.919 20 O -0.389 6.389 21 C 0.084 3.916 22 C -0.178 4.178 23 C 0.062 3.938 24 O -0.403 6.403 25 C 0.060 3.940 26 C -0.149 4.149 27 C 0.121 3.879 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.019 0.981 32 H 0.010 0.990 33 H 0.370 0.630 34 H 0.258 0.742 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.115 0.885 50 H 0.091 0.909 51 H 0.072 0.928 52 H 0.087 0.913 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 -32.390 7.864 34.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.077 4.077 3 C 0.043 3.957 4 N -0.394 5.394 5 C -0.369 4.369 6 H 0.066 0.934 7 C -0.257 4.257 8 N -0.636 5.636 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.224 1.224 12 H -0.166 1.166 13 C -0.164 4.164 14 C -0.017 4.017 15 N -0.351 5.351 16 C 0.322 3.678 17 O -0.471 6.471 18 C -0.164 4.164 19 C 0.004 3.996 20 O -0.308 6.308 21 C 0.026 3.974 22 C -0.216 4.216 23 C -0.014 4.014 24 O -0.322 6.322 25 C -0.016 4.016 26 C -0.186 4.186 27 C -0.002 4.002 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.205 0.795 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.124 0.876 48 H 0.082 0.918 49 H 0.133 0.867 50 H 0.110 0.890 51 H 0.091 0.909 52 H 0.105 0.895 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.571 -32.227 8.289 34.127 hybrid contribution -0.598 1.187 -0.366 1.378 sum 6.973 -31.041 7.924 32.786 Atomic orbital electron populations 1.21813 0.91894 1.02897 1.02200 1.21582 0.97357 0.93377 0.95395 1.20768 0.95157 0.90780 0.88990 1.42569 1.59029 1.09707 1.28060 1.19003 1.23443 0.87932 1.06551 0.93419 1.25584 1.02725 0.96638 1.00749 1.69909 1.50921 1.11552 1.31231 0.85385 0.78942 0.79525 0.77836 1.20144 1.22375 1.16614 1.22774 1.01909 0.94932 0.96833 1.22771 1.01201 0.96763 0.80961 1.48883 1.32954 1.34428 1.18878 1.20563 0.78597 0.83448 0.85220 1.90700 1.67001 1.67787 1.21589 1.21393 0.98199 0.96584 1.00178 1.22074 0.93406 0.89233 0.94855 1.87835 1.48857 1.50221 1.43922 1.22253 0.86450 0.93679 0.95012 1.22718 0.95858 1.00723 1.02329 1.22645 0.99234 0.81311 0.98228 1.87923 1.37915 1.21371 1.84964 1.22749 0.83423 0.96534 0.98895 1.22284 1.00463 0.93652 1.02240 1.22006 0.94604 0.88016 0.95623 0.92405 0.93158 0.89573 0.96330 0.97227 0.79503 0.93325 0.88590 0.92241 0.87650 0.87753 0.86767 0.85564 0.93710 0.92734 0.91368 0.91067 0.90651 0.91957 0.87596 0.91819 0.86723 0.88999 0.90950 0.89498 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.05 71.98 0.58 -2.44 16 2 C -0.08 -2.01 0.67 -51.29 -0.03 -2.05 16 3 C 0.17 6.46 4.85 86.38 0.42 6.88 16 4 N -0.75 -33.99 4.92 -343.46 -1.69 -35.68 16 5 C -0.24 -13.71 10.47 84.03 0.88 -12.83 16 6 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 7 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 8 N -0.99 -63.56 13.97 21.65 0.30 -63.26 16 9 Si 0.96 44.09 27.73 68.60 1.90 45.99 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.24 -9.63 6.52 99.48 0.65 -8.99 16 13 C -0.13 -2.84 5.72 31.69 0.18 -2.66 16 14 C 0.10 1.61 6.93 86.61 0.60 2.21 16 15 N -0.62 -13.63 3.29 -810.07 -2.67 -16.30 16 16 C 0.53 12.79 7.89 87.66 0.69 13.49 16 17 O -0.59 -19.19 16.32 -3.02 -0.05 -19.24 16 18 C -0.12 -2.04 5.00 29.85 0.15 -1.89 16 19 C 0.08 1.51 5.04 71.98 0.36 1.87 16 20 O -0.39 -6.97 10.00 -148.98 -1.49 -8.46 16 21 C 0.08 1.23 2.70 30.72 0.08 1.32 16 22 C -0.18 -2.60 5.76 30.69 0.18 -2.42 16 23 C 0.06 0.79 6.84 72.01 0.49 1.28 16 24 O -0.40 -6.22 10.76 -148.98 -1.60 -7.82 16 25 C 0.06 0.63 6.84 72.01 0.49 1.12 16 26 C -0.15 -1.76 5.79 30.68 0.18 -1.58 16 27 C 0.12 3.02 6.29 86.53 0.54 3.57 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.33 6.75 -2.39 -0.02 1.31 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.01 0.40 8.11 -2.39 -0.02 0.38 16 33 H 0.37 15.48 4.04 -92.71 -0.37 15.11 16 34 H 0.26 15.79 8.31 -92.71 -0.77 15.01 16 35 H 0.10 1.93 7.85 -2.39 -0.02 1.91 16 36 H 0.06 1.63 7.84 -2.39 -0.02 1.61 16 37 H 0.11 1.17 7.23 -2.39 -0.02 1.15 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 1.65 7.90 -2.39 -0.02 1.63 16 40 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 0.94 7.95 -2.39 -0.02 0.92 16 42 H 0.05 1.04 8.04 -2.39 -0.02 1.02 16 43 H 0.07 0.92 7.79 -2.39 -0.02 0.91 16 44 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.07 1.11 7.99 -2.39 -0.02 1.09 16 46 H 0.06 0.64 8.14 -2.38 -0.02 0.63 16 47 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.09 1.88 7.68 -2.39 -0.02 1.86 16 53 H 0.05 1.65 7.59 -2.39 -0.02 1.63 16 Total: -1.00 -76.95 412.94 1.41 -75.55 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.44 Total: 26.77 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.26 Total: 2.46 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -4.06 Total: -115.24 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -3.14 Total: -35.52 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 45.99 kcal Total: -76.95 1.41 -75.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716878055.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.190 kcal (2) G-P(sol) polarization free energy of solvation -76.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds