Wall clock time and date at job start Tue Mar 31 2020 22:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47189 * 2 1 4 4 C 1.53006 * 112.90783 * 292.11424 * 3 2 1 5 5 C 1.53003 * 109.46920 * 306.11909 * 4 3 2 6 6 C 1.53781 * 113.61618 * 63.36674 * 3 2 1 7 7 H 1.09000 * 113.61393 * 334.48149 * 6 3 2 8 8 N 1.46500 * 113.61309 * 203.66856 * 6 3 2 9 9 C 1.34778 * 119.99843 * 156.52785 * 8 6 3 10 10 O 1.21353 * 120.00116 * 359.97438 * 9 8 6 11 11 C 1.49451 * 120.00192 * 180.02562 * 9 8 6 12 12 O 1.21353 * 119.99692 * 359.97438 * 11 9 8 13 13 N 1.34778 * 120.00192 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99843 * 179.97438 * 13 11 9 15 15 C 1.52992 * 109.47163 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47627 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47556 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99760 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00258 * 179.72136 * 17 16 15 20 20 N 1.31512 * 119.99655 * 0.27620 * 19 17 16 21 21 Si 1.86797 * 120.00282 * 180.27459 * 19 17 16 22 22 H 1.48499 * 109.47111 * 59.99885 * 21 19 17 23 23 H 1.48499 * 109.47250 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47061 * 300.00025 * 21 19 17 25 25 C 1.53776 * 87.17643 * 89.07403 * 6 3 2 26 26 C 1.53781 * 87.07916 * 25.47645 * 25 6 3 27 27 H 1.09004 * 113.61356 * 219.93484 * 26 25 6 28 28 O 1.42903 * 113.61663 * 89.11568 * 26 25 6 29 29 C 1.42899 * 114.00264 * 109.50455 * 28 26 25 30 30 H 1.08996 * 109.46966 * 302.76430 * 1 2 3 31 31 H 1.08993 * 109.47102 * 62.77037 * 1 2 3 32 32 H 1.09005 * 109.46979 * 182.76550 * 1 2 3 33 33 H 1.08998 * 109.47747 * 239.99947 * 2 1 3 34 34 H 1.09002 * 109.47340 * 120.00102 * 2 1 3 35 35 H 1.08997 * 109.46894 * 66.11559 * 4 3 2 36 36 H 1.08995 * 109.46992 * 186.11934 * 4 3 2 37 37 H 1.08999 * 109.46853 * 185.94239 * 5 4 3 38 38 H 1.09007 * 109.46899 * 305.94762 * 5 4 3 39 39 H 1.08996 * 109.47160 * 65.94382 * 5 4 3 40 40 H 0.96997 * 120.00301 * 336.52693 * 8 6 3 41 41 H 0.96997 * 119.99856 * 359.97438 * 13 11 9 42 42 H 1.09001 * 109.47380 * 59.99513 * 14 13 11 43 43 H 1.09008 * 109.46914 * 299.99923 * 14 13 11 44 44 H 1.09001 * 109.47426 * 59.99473 * 15 14 13 45 45 H 1.09003 * 109.47369 * 300.00095 * 15 14 13 46 46 H 1.09001 * 109.47161 * 59.99295 * 16 15 14 47 47 H 1.09008 * 109.46669 * 299.99988 * 16 15 14 48 48 H 0.96999 * 119.99915 * 179.97438 * 20 19 17 49 49 H 1.08998 * 113.61348 * 140.01962 * 25 6 3 50 50 H 1.08993 * 113.61574 * 270.93221 * 25 6 3 51 51 H 1.08996 * 109.47250 * 180.02562 * 29 28 26 52 52 H 1.09001 * 109.47002 * 300.00456 * 29 28 26 53 53 H 1.09006 * 109.47033 * 59.99809 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7383 2.1809 -1.3057 5 6 2.2770 1.3702 -2.4862 6 6 1.6498 2.2339 1.2595 7 1 0.7486 1.8621 1.7470 8 7 1.6305 3.6848 1.0583 9 6 0.8839 4.4668 1.8630 10 8 0.2273 3.9690 2.7539 11 6 0.8636 5.9470 1.6575 12 8 1.5198 6.4448 0.7663 13 7 0.1166 6.7289 2.4619 14 6 0.0972 8.1799 2.2607 15 6 -0.8212 8.8266 3.2994 16 6 -0.8420 10.3419 3.0890 17 6 -1.7471 10.9788 4.1118 18 1 -2.2563 10.3643 4.8395 19 6 -1.9203 12.3466 4.1225 20 7 -1.2998 13.0949 3.2368 21 14 -3.0362 13.1369 5.3952 22 1 -2.5302 12.8286 6.7568 23 1 -3.0526 14.6081 5.1939 24 1 -4.4136 12.6020 5.2461 25 6 2.9515 1.7173 1.8948 26 6 3.5021 1.5801 0.4655 27 1 4.0974 0.6801 0.3114 28 8 4.1471 2.7612 -0.0154 29 6 5.5657 2.6400 -0.1376 30 1 -0.3633 0.5561 0.8641 31 1 -0.3633 0.4702 -0.9137 32 1 -0.3633 -1.0265 0.0496 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 0.6607 2.3053 -1.4120 36 1 2.2172 3.1598 -1.2885 37 1 2.1569 1.9434 -3.4055 38 1 3.3338 1.1552 -2.3273 39 1 1.7240 0.4343 -2.5668 40 1 2.1550 4.0828 0.3460 41 1 -0.4082 6.3310 3.1740 42 1 -0.2719 8.4031 1.2596 43 1 1.1067 8.5757 2.3722 44 1 -0.4517 8.6034 4.3003 45 1 -1.8308 8.4309 3.1884 46 1 -1.2118 10.5647 2.0881 47 1 0.1675 10.7380 3.1998 48 1 -1.4220 14.0572 3.2441 49 1 3.4720 2.4650 2.4932 50 1 2.8370 0.7647 2.4118 51 1 5.9799 3.5778 -0.5076 52 1 5.9962 2.4127 0.8377 53 1 5.8030 1.8370 -0.8355 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343142343.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:38 Heat of formation + Delta-G solvation = -137.959170 kcal Electronic energy + Delta-G solvation = -30350.891324 eV Core-core repulsion = 26221.946707 eV Total energy + Delta-G solvation = -4128.944617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.28583 -41.18879 -39.42594 -37.59242 -37.17588 -35.47457 -34.97054 -33.39665 -33.04232 -32.08927 -29.06153 -27.72892 -26.96501 -26.55042 -25.35665 -24.01256 -23.80932 -22.38414 -22.24886 -21.30675 -19.99203 -18.97246 -18.46028 -18.01191 -17.43815 -17.14025 -16.97691 -16.75904 -16.51940 -16.37076 -16.10949 -16.01251 -15.28670 -15.02519 -14.94368 -14.68973 -14.52339 -14.26536 -13.92894 -13.87719 -13.79183 -13.52305 -13.50427 -13.12457 -12.88478 -12.75269 -12.73157 -12.56375 -12.55130 -12.44137 -12.25138 -12.20112 -11.88296 -11.70466 -11.56360 -11.39388 -11.31592 -11.25443 -10.99114 -10.69235 -10.54476 -10.36620 -10.32837 -10.15302 -8.19405 -6.30505 0.28189 1.25681 1.41891 1.44696 1.52577 2.07508 2.41108 2.49225 2.75625 3.14215 3.33885 3.41173 3.53980 3.75889 3.90185 4.05255 4.07162 4.16672 4.24510 4.37696 4.44361 4.51130 4.52099 4.55621 4.59021 4.60469 4.70307 4.76324 4.81358 4.85246 4.89281 4.90278 4.90482 5.00015 5.01837 5.11076 5.13862 5.21163 5.28076 5.31567 5.35368 5.37386 5.40961 5.50858 5.59684 5.69916 5.83891 5.91103 6.22560 6.28932 6.36638 6.70106 6.86040 6.90121 7.38660 8.92325 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021008 B = 0.001848 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.479106 B =15149.940011 C =15577.010589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.071 4.071 4 C -0.107 4.107 5 C -0.141 4.141 6 C 0.114 3.886 7 H 0.100 0.900 8 N -0.665 5.665 9 C 0.514 3.486 10 O -0.540 6.540 11 C 0.500 3.500 12 O -0.547 6.547 13 N -0.685 5.685 14 C 0.127 3.873 15 C -0.105 4.105 16 C 0.025 3.975 17 C -0.543 4.543 18 H 0.064 0.936 19 C -0.003 4.003 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.170 4.170 26 C 0.074 3.926 27 H 0.100 0.900 28 O -0.387 6.387 29 C 0.029 3.971 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.418 0.582 41 H 0.419 0.581 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.067 0.933 46 H -0.004 1.004 47 H -0.004 1.004 48 H 0.264 0.736 49 H 0.063 0.937 50 H 0.124 0.876 51 H 0.087 0.913 52 H 0.046 0.954 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.446 -33.489 -8.780 36.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.131 4.131 3 C -0.072 4.072 4 C -0.145 4.145 5 C -0.198 4.198 6 C 0.010 3.990 7 H 0.118 0.882 8 N -0.317 5.317 9 C 0.294 3.706 10 O -0.418 6.418 11 C 0.281 3.719 12 O -0.426 6.426 13 N -0.338 5.338 14 C 0.004 3.996 15 C -0.143 4.143 16 C -0.012 4.012 17 C -0.581 4.581 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.209 4.209 26 C 0.016 3.984 27 H 0.117 0.883 28 O -0.306 6.306 29 C -0.067 4.067 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.257 0.743 41 H 0.257 0.743 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.014 0.986 47 H 0.014 0.986 48 H 0.072 0.928 49 H 0.082 0.918 50 H 0.142 0.858 51 H 0.105 0.895 52 H 0.064 0.936 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.379 -33.127 -8.891 36.138 hybrid contribution -0.261 1.112 0.583 1.282 sum 11.118 -32.016 -8.308 34.894 Atomic orbital electron populations 1.21787 0.95507 1.02308 1.01613 1.21331 0.96005 0.91648 1.04069 1.22596 0.94253 0.96871 0.93464 1.21262 1.00425 0.98968 0.93804 1.21678 1.01195 1.00087 0.96813 1.22270 0.99863 0.78288 0.98608 0.88220 1.45488 1.45471 1.07234 1.33537 1.19962 0.80622 0.87297 0.82691 1.90736 1.43176 1.75368 1.32529 1.20359 0.80688 0.88274 0.82622 1.90752 1.43022 1.75923 1.32865 1.45868 1.46126 1.07813 1.33970 1.21484 1.00638 0.77439 1.00030 1.21637 0.98683 0.96252 0.97737 1.18929 0.95601 0.90947 0.95769 1.21643 1.27848 0.92625 1.15969 0.91750 1.26002 0.97635 0.98282 0.98123 1.70094 1.44442 1.05647 1.37137 0.85480 0.79259 0.76959 0.79219 1.19136 1.21046 1.19131 1.23988 0.96233 1.03000 0.97650 1.23319 0.93412 0.88684 0.93013 0.88250 1.87810 1.21020 1.35869 1.85893 1.22924 0.79818 1.03162 1.00817 0.93595 0.92941 0.91208 0.89263 0.89965 0.92567 0.92619 0.93183 0.92429 0.91509 0.74252 0.74343 0.91756 0.91819 0.91449 0.91418 0.98553 0.98576 0.92777 0.91847 0.85760 0.89498 0.93551 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.59 71.98 0.69 -0.85 16 2 C -0.09 -0.73 5.02 30.59 0.15 -0.57 16 3 C -0.07 -0.86 0.51 -51.56 -0.03 -0.89 16 4 C -0.11 -1.56 4.40 30.60 0.13 -1.43 16 5 C -0.14 -1.54 9.25 71.98 0.67 -0.87 16 6 C 0.11 2.00 3.56 45.52 0.16 2.16 16 7 H 0.10 1.92 5.92 -2.39 -0.01 1.91 16 8 N -0.66 -15.29 4.66 -441.37 -2.06 -17.35 16 9 C 0.51 14.46 7.89 87.27 0.69 15.15 16 10 O -0.54 -16.61 16.10 -3.25 -0.05 -16.66 16 11 C 0.50 15.89 7.89 87.27 0.69 16.58 16 12 O -0.55 -19.90 16.48 -3.25 -0.05 -19.95 16 13 N -0.69 -21.28 5.55 -464.41 -2.58 -23.86 16 14 C 0.13 4.53 5.67 86.38 0.49 5.02 16 15 C -0.11 -4.15 5.27 30.59 0.16 -3.99 16 16 C 0.03 1.32 4.97 29.85 0.15 1.46 16 17 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 18 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 20 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 21 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 C -0.17 -2.34 7.36 31.12 0.23 -2.11 16 26 C 0.07 0.87 3.56 31.21 0.11 0.98 16 27 H 0.10 0.72 7.86 -2.39 -0.02 0.70 16 28 O -0.39 -6.09 8.07 -148.98 -1.20 -7.29 16 29 C 0.03 0.31 10.86 113.37 1.23 1.54 16 30 H 0.04 0.59 6.54 -2.39 -0.02 0.57 16 31 H 0.05 0.58 7.23 -2.39 -0.02 0.56 16 32 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.09 0.50 6.41 -2.39 -0.02 0.48 16 34 H 0.08 0.44 7.32 -2.39 -0.02 0.42 16 35 H 0.06 0.91 7.34 -2.39 -0.02 0.89 16 36 H 0.06 1.03 5.60 -2.39 -0.01 1.02 16 37 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 0.58 7.93 -2.38 -0.02 0.56 16 39 H 0.07 0.56 6.81 -2.39 -0.02 0.55 16 40 H 0.42 9.94 5.44 -92.71 -0.50 9.43 16 41 H 0.42 11.67 7.94 -92.71 -0.74 10.94 16 42 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 44 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 48 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 49 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.12 1.10 7.62 -2.39 -0.02 1.08 16 51 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 53 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 Total: -1.00 -69.68 419.10 2.26 -67.42 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.33 Total: 26.04 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.22 Total: 2.14 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -4.35 Total: -97.96 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -1.31 Total: -43.90 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.68 2.26 -67.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343142343.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.540 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds