Wall clock time and date at job start Wed Apr 1 2020 01:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34632 * 116.99842 * 2 1 4 4 O 1.21507 * 120.00623 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99769 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.63448 * 180.02562 * 5 3 2 7 7 C 1.53188 * 108.89525 * 233.52220 * 6 5 3 8 8 C 1.53070 * 109.29469 * 305.57411 * 7 6 5 9 9 C 1.50700 * 109.44185 * 181.24009 * 8 7 6 10 10 O 1.21289 * 119.99891 * 255.67339 * 9 8 7 11 11 N 1.34770 * 120.00256 * 75.67697 * 9 8 7 12 12 C 1.46505 * 119.99950 * 4.76214 * 11 9 8 13 13 C 1.50704 * 109.46841 * 83.70322 * 12 11 9 14 14 H 1.07993 * 120.00188 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99703 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99828 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99866 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47066 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46940 * 119.99945 * 17 15 13 20 20 H 1.48492 * 109.47320 * 240.00308 * 17 15 13 21 21 C 1.46506 * 120.00184 * 184.76414 * 11 9 8 22 22 C 1.52997 * 109.46974 * 89.99743 * 21 11 9 23 23 C 1.53003 * 109.47095 * 180.02562 * 22 21 11 24 24 C 1.52996 * 109.47400 * 175.00113 * 23 22 21 25 25 C 1.52998 * 109.46987 * 295.00099 * 23 22 21 26 26 C 1.53039 * 109.65757 * 61.15380 * 8 7 6 27 27 C 1.46930 * 120.63028 * 359.97438 * 5 3 2 28 28 H 1.08996 * 109.46787 * 59.99761 * 1 2 3 29 29 H 1.08998 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46780 * 299.99512 * 1 2 3 31 31 H 1.09007 * 109.58439 * 353.38135 * 6 5 3 32 32 H 1.08996 * 109.58577 * 113.65538 * 6 5 3 33 33 H 1.08997 * 109.49801 * 65.38745 * 7 6 5 34 34 H 1.09003 * 109.49568 * 185.48317 * 7 6 5 35 35 H 1.09001 * 109.34893 * 301.13005 * 8 7 6 36 36 H 1.08996 * 109.46981 * 203.70181 * 12 11 9 37 37 H 1.08995 * 109.47178 * 323.70327 * 12 11 9 38 38 H 0.97001 * 119.99647 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.46969 * 210.00148 * 21 11 9 40 40 H 1.09000 * 109.46630 * 329.99687 * 21 11 9 41 41 H 1.08997 * 109.47354 * 300.00389 * 22 21 11 42 42 H 1.09005 * 109.47037 * 60.00469 * 22 21 11 43 43 H 1.08998 * 109.47092 * 54.99890 * 23 22 21 44 44 H 1.09011 * 109.46949 * 59.99804 * 24 23 22 45 45 H 1.08995 * 109.47537 * 179.97438 * 24 23 22 46 46 H 1.08999 * 109.47014 * 300.00464 * 24 23 22 47 47 H 1.08996 * 109.47150 * 179.97438 * 25 23 22 48 48 H 1.09002 * 109.47265 * 300.00259 * 25 23 22 49 49 H 1.09004 * 109.47051 * 59.99813 * 25 23 22 50 50 H 1.09008 * 109.49810 * 178.74621 * 26 8 7 51 51 H 1.09004 * 109.52417 * 58.66825 * 26 8 7 52 52 H 1.09008 * 109.58362 * 246.19641 * 27 5 3 53 53 H 1.09004 * 109.58519 * 6.47627 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0907 2.5717 0.0011 7 6 5.0846 2.6118 -1.1639 8 6 6.0242 1.4072 -1.0689 9 6 7.0228 1.4598 -2.1962 10 8 6.9000 0.7208 -3.1502 11 7 8.0524 2.3278 -2.1445 12 6 8.2610 3.1463 -0.9474 13 6 9.0312 2.3522 0.0760 14 1 9.3352 1.3394 -0.1434 15 6 9.3485 2.9191 1.2922 16 7 8.9787 4.1526 1.5591 17 14 10.3025 1.9347 2.5611 18 1 10.5965 0.5832 2.0202 19 1 11.5768 2.6309 2.8719 20 1 9.4931 1.8073 3.7995 21 6 8.9631 2.4531 -3.2853 22 6 8.4392 3.5273 -4.2405 23 6 9.3899 3.6576 -5.4322 24 6 8.8034 4.6406 -6.4474 25 6 10.7466 4.1732 -4.9482 26 6 5.2133 0.1129 -1.1660 27 6 4.2229 0.0467 0.0017 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.3564 3.3687 -0.1174 32 1 4.6248 2.7041 0.9419 33 1 4.5407 2.5730 -2.1077 34 1 5.6648 3.5333 -1.1155 35 1 6.5513 1.4347 -0.1152 36 1 8.8247 4.0407 -1.2126 37 1 7.2956 3.4351 -0.5320 38 1 9.2023 4.5516 2.4146 39 1 9.9542 2.7350 -2.9298 40 1 9.0227 1.4990 -3.8089 41 1 7.4481 3.2454 -4.5959 42 1 8.3796 4.4814 -3.7168 43 1 9.5184 2.6829 -5.9027 44 1 8.6748 5.6154 -5.9768 45 1 9.4808 4.7338 -7.2962 46 1 7.8368 4.2733 -6.7921 47 1 11.4240 4.2656 -5.7971 48 1 10.6181 5.1480 -4.4776 49 1 11.1644 3.4729 -4.2250 50 1 5.8870 -0.7428 -1.1204 51 1 4.6664 0.0955 -2.1087 52 1 4.7700 -0.0273 0.9416 53 1 3.5757 -0.8227 -0.1139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826096978.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:03 Heat of formation + Delta-G solvation = -154.821124 kcal Electronic energy + Delta-G solvation = -31602.020769 eV Core-core repulsion = 27472.344963 eV Total energy + Delta-G solvation = -4129.675806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84099 -41.02543 -38.91953 -37.81606 -37.22992 -36.37724 -34.45381 -34.13778 -32.17052 -30.73016 -28.93549 -28.55173 -27.99142 -26.83115 -24.98398 -24.51133 -24.26604 -22.62459 -21.03377 -20.87592 -19.93982 -19.03012 -18.58844 -18.17561 -17.79697 -17.56706 -17.06570 -16.37266 -16.24586 -15.89611 -15.77881 -15.50357 -15.12560 -15.03882 -14.83424 -14.57682 -14.39669 -14.18358 -14.06744 -13.74581 -13.68122 -13.44797 -13.21309 -13.11371 -13.02869 -12.90445 -12.76620 -12.67626 -12.62622 -12.27945 -12.22149 -12.05650 -11.88108 -11.80846 -11.78531 -11.64960 -11.60254 -11.54608 -11.44583 -11.37906 -10.66926 -10.47425 -9.84497 -9.39120 -8.16786 -6.30382 1.13330 1.41522 1.46522 1.55258 1.66958 1.78697 2.32348 2.47965 2.89826 3.13609 3.59895 3.75524 3.80552 3.92499 4.00227 4.01788 4.08170 4.24148 4.30036 4.36044 4.36843 4.38731 4.45787 4.57725 4.66222 4.68916 4.70935 4.73695 4.75356 4.77327 4.79520 4.83706 4.87277 4.94941 4.97667 5.03927 5.05571 5.12754 5.16525 5.25333 5.27952 5.32873 5.33616 5.42860 5.47162 5.51614 5.70517 5.90908 6.11457 6.23942 6.60474 6.86464 7.15282 7.34258 7.45766 8.88192 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008101 B = 0.003883 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3455.458504 B = 7209.629799 C = 9616.815142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.371 6.371 3 C 0.647 3.353 4 O -0.608 6.608 5 N -0.590 5.590 6 C 0.136 3.864 7 C -0.111 4.111 8 C -0.103 4.103 9 C 0.519 3.481 10 O -0.596 6.596 11 N -0.599 5.599 12 C 0.249 3.751 13 C -0.544 4.544 14 H 0.049 0.951 15 C 0.029 3.971 16 N -0.914 5.914 17 Si 0.948 3.052 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.276 1.276 21 C 0.116 3.884 22 C -0.115 4.115 23 C -0.091 4.091 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.104 4.104 27 C 0.118 3.882 28 H 0.058 0.942 29 H 0.137 0.863 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.018 0.982 37 H 0.043 0.957 38 H 0.267 0.733 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.049 0.951 50 H 0.081 0.919 51 H 0.063 0.937 52 H 0.086 0.914 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.173 -4.711 -5.793 11.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.284 6.284 3 C 0.402 3.598 4 O -0.500 6.500 5 N -0.330 5.330 6 C 0.015 3.985 7 C -0.149 4.149 8 C -0.124 4.124 9 C 0.308 3.692 10 O -0.479 6.479 11 N -0.328 5.328 12 C 0.129 3.871 13 C -0.582 4.582 14 H 0.067 0.933 15 C -0.172 4.172 16 N -0.553 5.553 17 Si 0.775 3.225 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.202 1.202 21 C -0.007 4.007 22 C -0.154 4.154 23 C -0.110 4.110 24 C -0.199 4.199 25 C -0.204 4.204 26 C -0.142 4.142 27 C -0.004 4.004 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.100 0.900 51 H 0.081 0.919 52 H 0.104 0.896 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.474 -4.664 -6.129 11.451 hybrid contribution 0.682 -0.059 0.838 1.082 sum -7.792 -4.723 -5.291 10.536 Atomic orbital electron populations 1.23502 0.72853 1.05633 1.02479 1.86243 1.25725 1.29713 1.86756 1.18155 0.83338 0.82334 0.75973 1.90944 1.64969 1.36065 1.58009 1.47070 1.01820 1.09327 1.74798 1.21583 0.94573 0.83453 0.98906 1.21793 0.96435 0.97858 0.98834 1.21274 0.95056 0.97479 0.98639 1.20815 0.82126 0.78786 0.87445 1.90558 1.76774 1.43514 1.37043 1.48265 1.27271 1.39874 1.17364 1.19216 0.97234 0.89706 0.80959 1.21663 1.36389 0.99977 1.00204 0.93260 1.25513 0.96371 0.95630 0.99649 1.69998 1.46824 1.14151 1.24330 0.85649 0.78608 0.78968 0.79315 1.19703 1.20835 1.20184 1.21467 0.93172 0.99093 0.86996 1.21876 0.98898 0.98419 0.96188 1.21038 0.95085 0.99891 0.94959 1.21790 1.00763 0.98736 0.98561 1.21877 0.96246 1.00948 1.01341 1.21656 0.97443 0.96326 0.98805 1.21898 0.93384 0.86123 0.98993 0.92276 0.84463 0.92026 0.88792 0.89792 0.91932 0.89794 0.87953 0.96393 0.93958 0.92382 0.90722 0.91874 0.93377 0.92437 0.91212 0.92731 0.91223 0.93033 0.91209 0.92944 0.93214 0.89999 0.91867 0.89562 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 10.56 113.37 1.20 2.02 16 2 O -0.37 -8.98 9.20 -55.41 -0.51 -9.50 16 3 C 0.65 19.34 8.43 129.79 1.09 20.44 16 4 O -0.61 -21.42 15.54 19.82 0.31 -21.11 16 5 N -0.59 -16.73 2.97 -949.13 -2.82 -19.56 16 6 C 0.14 4.00 6.43 86.36 0.55 4.56 16 7 C -0.11 -3.51 5.07 30.68 0.16 -3.36 16 8 C -0.10 -3.56 1.65 -11.50 -0.02 -3.58 16 9 C 0.52 20.91 6.81 87.66 0.60 21.50 16 10 O -0.60 -26.21 15.58 -3.06 -0.05 -26.26 16 11 N -0.60 -24.42 2.47 -826.13 -2.04 -26.47 16 12 C 0.25 11.26 4.78 85.63 0.41 11.67 16 13 C -0.54 -26.91 8.57 25.60 0.22 -26.69 16 14 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 15 C 0.03 1.47 5.46 84.66 0.46 1.93 16 16 N -0.91 -47.85 13.29 21.45 0.28 -47.56 16 17 Si 0.95 40.23 29.54 68.60 2.03 42.26 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 21 C 0.12 4.21 5.17 86.38 0.45 4.66 16 22 C -0.12 -3.59 5.01 30.59 0.15 -3.44 16 23 C -0.09 -2.26 2.92 -10.79 -0.03 -2.29 16 24 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 25 C -0.15 -3.45 8.95 71.98 0.64 -2.81 16 26 C -0.10 -3.04 4.76 30.69 0.15 -2.90 16 27 C 0.12 2.89 6.45 86.38 0.56 3.45 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.09 2.82 7.00 -2.38 -0.02 2.81 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 2.81 6.13 -2.39 -0.01 2.80 16 35 H 0.10 3.86 6.71 -2.39 -0.02 3.85 16 36 H 0.02 0.87 8.02 -2.39 -0.02 0.85 16 37 H 0.04 1.92 4.83 -2.39 -0.01 1.91 16 38 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 39 H 0.07 2.72 6.50 -2.39 -0.02 2.71 16 40 H 0.06 2.38 7.36 -2.39 -0.02 2.36 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 1.85 8.14 -2.38 -0.02 1.84 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.05 1.26 6.57 -2.39 -0.02 1.25 16 50 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 51 H 0.06 1.98 7.98 -2.39 -0.02 1.96 16 52 H 0.09 1.97 8.14 -2.38 -0.02 1.96 16 53 H 0.11 2.32 6.93 -2.38 -0.02 2.31 16 Total: -1.00 -62.45 416.38 5.32 -57.13 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.87 Total: 28.23 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 7.25 Total: 22.83 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -4.58 Total: -93.58 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -0.25 Total: -56.87 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -62.45 5.32 -57.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826096978.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.687 kcal (2) G-P(sol) polarization free energy of solvation -62.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds