Wall clock time and date at job start Wed Apr 1 2020 00:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46795 * 2 1 4 4 C 1.52999 * 109.47424 * 240.00285 * 2 1 3 5 5 C 1.53000 * 109.47268 * 119.99869 * 2 1 3 6 6 H 1.08997 * 109.48938 * 166.67115 * 5 2 1 7 7 O 1.42901 * 109.48041 * 286.70333 * 5 2 1 8 8 C 1.42911 * 114.09713 * 181.14189 * 7 5 2 9 9 C 1.53106 * 109.48320 * 298.88486 * 8 7 5 10 10 C 1.53173 * 109.15796 * 57.47255 * 9 8 7 11 11 C 1.53095 * 109.47837 * 46.64182 * 5 2 1 12 12 H 1.09006 * 109.52067 * 302.31319 * 11 5 2 13 13 C 1.53003 * 109.57442 * 62.47208 * 11 5 2 14 14 N 1.46498 * 109.46909 * 174.41028 * 13 11 5 15 15 C 1.34774 * 119.99811 * 179.97438 * 14 13 11 16 16 O 1.21347 * 120.00084 * 0.02562 * 15 14 13 17 17 C 1.49455 * 120.00190 * 179.97438 * 15 14 13 18 18 O 1.21347 * 119.99725 * 0.02562 * 17 15 14 19 19 N 1.34778 * 120.00247 * 180.02562 * 17 15 14 20 20 C 1.46498 * 119.99867 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.46831 * 179.97438 * 20 19 17 22 22 C 1.50700 * 109.47310 * 179.97438 * 21 20 19 23 23 H 1.08000 * 119.99613 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00222 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99980 * 180.02562 * 24 22 21 26 26 Si 1.86792 * 119.99925 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46982 * 90.00312 * 26 24 22 28 28 H 1.48503 * 109.47382 * 209.99975 * 26 24 22 29 29 H 1.48503 * 109.47397 * 330.00189 * 26 24 22 30 30 H 1.08993 * 109.47438 * 299.99858 * 1 2 3 31 31 H 1.08997 * 109.46824 * 60.00466 * 1 2 3 32 32 H 1.09005 * 109.46439 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46966 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47216 * 300.00163 * 3 2 1 35 35 H 1.09005 * 109.47241 * 60.00265 * 3 2 1 36 36 H 1.08998 * 109.46805 * 335.62781 * 4 2 1 37 37 H 1.08999 * 109.47529 * 95.62710 * 4 2 1 38 38 H 1.08995 * 109.47133 * 215.63661 * 4 2 1 39 39 H 1.08992 * 109.47987 * 58.82041 * 8 7 5 40 40 H 1.08997 * 109.47813 * 178.85799 * 8 7 5 41 41 H 1.09000 * 109.44801 * 297.61538 * 9 8 7 42 42 H 1.09000 * 109.59354 * 177.42634 * 9 8 7 43 43 H 1.09001 * 109.54192 * 183.23861 * 10 9 8 44 44 H 1.09006 * 109.54219 * 63.06624 * 10 9 8 45 45 H 1.09003 * 109.46819 * 294.41034 * 13 11 5 46 46 H 1.08997 * 109.46891 * 54.40874 * 13 11 5 47 47 H 0.97001 * 120.00321 * 0.02562 * 14 13 11 48 48 H 0.97000 * 119.99556 * 359.97438 * 19 17 15 49 49 H 1.08996 * 109.47332 * 300.00103 * 20 19 17 50 50 H 1.09004 * 109.47145 * 60.00354 * 20 19 17 51 51 H 1.08996 * 109.47497 * 300.00309 * 21 20 19 52 52 H 1.09004 * 109.46715 * 60.00398 * 21 20 19 53 53 H 0.96994 * 120.00327 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2492 6 1 3.1039 -0.9311 1.1391 7 8 1.8339 0.1071 2.3953 8 6 2.3009 -0.4637 3.6194 9 6 1.5491 -1.7689 3.8939 10 6 1.7497 -2.7225 2.7121 11 6 1.2760 -2.0358 1.4275 12 1 0.2079 -1.8298 1.4972 13 6 1.5433 -2.9504 0.2303 14 7 0.9209 -4.2558 0.4646 15 6 1.0258 -5.2284 -0.4625 16 8 1.6361 -5.0230 -1.4910 17 6 0.3914 -6.5603 -0.2233 18 8 -0.2185 -6.7658 0.8054 19 7 0.4967 -7.5331 -1.1502 20 6 -0.1257 -8.8385 -0.9159 21 6 0.1410 -9.7528 -2.1133 22 6 -0.4986 -11.0959 -1.8721 23 1 -1.0415 -11.2788 -0.9566 24 6 -0.3908 -12.0910 -2.8203 25 7 -0.9494 -13.2629 -2.6100 26 14 0.5488 -11.7748 -4.4034 27 1 1.9750 -12.1432 -4.2146 28 1 -0.0334 -12.5941 -5.4967 29 1 0.4518 -10.3360 -4.7577 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 -0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.2787 -1.4157 -1.6041 37 1 2.2563 0.0100 -2.0282 38 1 2.9486 -1.2717 -1.0054 39 1 3.3682 -0.6702 3.5402 40 1 2.1255 0.2357 4.4368 41 1 0.4867 -1.5572 4.0149 42 1 1.9357 -2.2291 4.8032 43 1 1.1704 -3.6314 2.8747 44 1 2.8063 -2.9748 2.6224 45 1 1.1217 -2.5031 -0.6698 46 1 2.6183 -3.0779 0.1035 47 1 0.4327 -4.4199 1.2866 48 1 0.9839 -7.3686 -1.9726 49 1 0.2958 -9.2857 -0.0157 50 1 -1.2008 -8.7109 -0.7890 51 1 -0.2808 -9.3054 -3.0132 52 1 1.2161 -9.8804 -2.2405 53 1 -0.8739 -13.9630 -3.2771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323013055.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:52 Heat of formation + Delta-G solvation = -155.833640 kcal Electronic energy + Delta-G solvation = -30560.174347 eV Core-core repulsion = 26430.454635 eV Total energy + Delta-G solvation = -4129.719712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.92627 -41.19272 -39.57757 -37.51046 -37.06720 -36.45214 -34.84335 -34.05789 -32.12824 -31.70494 -28.92206 -28.23748 -27.93479 -26.80913 -25.90441 -24.64832 -23.08619 -22.63978 -21.51498 -21.17847 -20.00911 -19.49121 -19.02324 -17.95756 -17.35242 -17.17866 -17.02469 -16.55777 -16.32260 -16.19505 -16.06986 -15.74574 -15.56792 -15.23603 -14.88572 -14.66941 -14.64781 -14.54184 -14.40762 -13.94989 -13.73262 -13.40631 -13.39692 -13.07295 -13.05453 -12.85139 -12.79177 -12.56148 -12.39530 -12.24297 -12.21838 -12.19767 -11.78719 -11.78586 -11.66441 -11.51657 -11.48832 -11.36972 -11.04005 -10.79370 -10.75303 -10.36576 -10.27132 -10.16989 -8.30513 -6.37330 0.31779 1.30238 1.39486 1.41112 1.52317 2.11659 2.36092 2.62313 2.80696 3.04605 3.41255 3.50183 3.58518 3.75068 3.93893 4.03881 4.06580 4.16069 4.20119 4.25955 4.29490 4.38006 4.38510 4.50468 4.60684 4.67951 4.70277 4.71818 4.79681 4.86163 4.88396 4.91871 4.98347 4.99881 5.06204 5.08181 5.10628 5.14306 5.15622 5.22527 5.29151 5.33734 5.36658 5.41558 5.50960 5.53915 5.58346 5.89763 6.20074 6.30650 6.34649 6.67334 6.73421 6.92184 7.27208 8.85676 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.001981 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.594639 B =14132.552202 C =14986.840769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 C -0.131 4.131 4 C -0.154 4.154 5 C 0.114 3.886 6 H 0.063 0.937 7 O -0.383 6.383 8 C 0.055 3.945 9 C -0.152 4.152 10 C -0.124 4.124 11 C -0.125 4.125 12 H 0.094 0.906 13 C 0.106 3.894 14 N -0.687 5.687 15 C 0.515 3.485 16 O -0.537 6.537 17 C 0.499 3.501 18 O -0.550 6.550 19 N -0.688 5.688 20 C 0.142 3.858 21 C -0.017 4.017 22 C -0.536 4.536 23 H 0.036 0.964 24 C 0.007 3.993 25 N -0.947 5.947 26 Si 0.953 3.047 27 H -0.266 1.266 28 H -0.286 1.286 29 H -0.241 1.241 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.416 0.584 48 H 0.418 0.582 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.036 0.964 52 H 0.034 0.966 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.988 33.792 8.812 36.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.188 4.188 4 C -0.211 4.211 5 C 0.056 3.944 6 H 0.081 0.919 7 O -0.302 6.302 8 C -0.021 4.021 9 C -0.189 4.189 10 C -0.162 4.162 11 C -0.144 4.144 12 H 0.112 0.888 13 C -0.016 4.016 14 N -0.340 5.340 15 C 0.295 3.705 16 O -0.415 6.415 17 C 0.280 3.720 18 O -0.429 6.429 19 N -0.339 5.339 20 C 0.019 3.981 21 C -0.055 4.055 22 C -0.574 4.574 23 H 0.054 0.946 24 C -0.191 4.191 25 N -0.587 5.587 26 Si 0.776 3.224 27 H -0.191 1.191 28 H -0.212 1.212 29 H -0.164 1.164 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.254 0.746 48 H 0.255 0.745 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.054 0.946 52 H 0.053 0.947 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.877 33.819 8.738 36.040 hybrid contribution 0.123 -1.061 -0.336 1.119 sum 9.000 32.759 8.402 34.996 Atomic orbital electron populations 1.22005 0.94033 1.01875 1.02106 1.20583 0.96345 0.96373 0.92832 1.21748 1.00753 0.94444 1.01869 1.22329 1.01356 1.00635 0.96757 1.22095 0.97761 0.88431 0.86129 0.91948 1.87939 1.83307 1.43428 1.15485 1.22718 0.97423 0.95308 0.86656 1.22159 1.01908 0.96189 0.98666 1.21717 1.01964 0.98604 0.93910 1.22088 1.02813 0.95300 0.94204 0.88820 1.22313 0.98722 0.80713 0.99852 1.45841 1.54199 1.12655 1.21354 1.19875 0.81126 0.85267 0.84271 1.90751 1.41947 1.81796 1.26970 1.20402 0.81485 0.86088 0.84056 1.90736 1.42674 1.82221 1.27237 1.45978 1.53626 1.12714 1.21626 1.21275 0.97085 0.80422 0.99318 1.19694 0.97600 0.93483 0.94723 1.21196 1.34455 0.97035 1.04726 0.94600 1.26006 0.96216 0.94393 1.02488 1.70056 1.46352 1.05098 1.37203 0.85618 0.78814 0.79940 0.78028 1.19091 1.21171 1.16384 0.92501 0.92162 0.92453 0.92749 0.92233 0.92478 0.91673 0.91297 0.91941 0.92737 0.87725 0.91239 0.89622 0.91349 0.91372 0.88358 0.90811 0.74582 0.74543 0.92262 0.92276 0.94597 0.94745 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.39 71.98 0.53 -1.22 16 2 C -0.06 -0.72 0.62 -52.18 -0.03 -0.75 16 3 C -0.13 -1.50 7.95 71.98 0.57 -0.93 16 4 C -0.15 -1.78 7.55 71.98 0.54 -1.24 16 5 C 0.11 1.39 1.63 30.63 0.05 1.44 16 6 H 0.06 0.75 7.77 -2.39 -0.02 0.73 16 7 O -0.38 -5.23 9.09 -148.98 -1.35 -6.59 16 8 C 0.06 0.55 6.84 72.02 0.49 1.05 16 9 C -0.15 -1.50 6.14 30.69 0.19 -1.31 16 10 C -0.12 -1.45 5.02 30.71 0.15 -1.30 16 11 C -0.13 -1.54 1.52 -10.70 -0.02 -1.56 16 12 H 0.09 1.22 6.17 -2.38 -0.01 1.20 16 13 C 0.11 1.62 3.64 86.38 0.31 1.93 16 14 N -0.69 -13.45 5.25 -464.41 -2.44 -15.89 16 15 C 0.51 13.52 7.89 87.27 0.69 14.21 16 16 O -0.54 -15.77 16.48 -3.24 -0.05 -15.83 16 17 C 0.50 15.66 7.89 87.27 0.69 16.35 16 18 O -0.55 -19.56 16.48 -3.24 -0.05 -19.61 16 19 N -0.69 -22.48 5.55 -464.41 -2.58 -25.06 16 20 C 0.14 5.59 5.61 86.38 0.48 6.07 16 21 C -0.02 -0.76 4.16 29.85 0.12 -0.64 16 22 C -0.54 -30.06 9.66 25.60 0.25 -29.82 16 23 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 24 C 0.01 0.37 5.47 84.65 0.46 0.83 16 25 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 26 Si 0.95 42.61 27.47 68.60 1.88 44.50 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 28 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 29 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 30 H 0.06 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.72 5.58 -2.38 -0.01 0.71 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.61 8.12 -2.39 -0.02 0.59 16 35 H 0.06 0.75 7.40 -2.38 -0.02 0.74 16 36 H 0.06 0.84 5.40 -2.39 -0.01 0.83 16 37 H 0.07 0.72 7.75 -2.39 -0.02 0.70 16 38 H 0.06 0.71 6.57 -2.39 -0.02 0.70 16 39 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 0.85 6.68 -2.39 -0.02 0.84 16 44 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.10 1.54 3.82 -2.39 -0.01 1.53 16 46 H 0.07 1.17 7.65 -2.39 -0.02 1.15 16 47 H 0.42 7.54 6.48 -92.71 -0.60 6.94 16 48 H 0.42 12.31 7.94 -92.71 -0.74 11.57 16 49 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 51 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 52 H 0.03 1.44 7.57 -2.38 -0.02 1.42 16 53 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -67.82 403.77 0.73 -67.08 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.47 Total: 26.45 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.49 Total: 3.13 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -4.72 Total: -99.13 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.46 Total: -42.03 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.50 kcal Total: -67.82 0.73 -67.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323013055.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.750 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds