Wall clock time and date at job start Wed Apr 1 2020 00:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47411 * 2 1 4 4 C 1.52997 * 109.47411 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47080 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47434 * 54.99895 * 5 4 3 7 7 C 1.52997 * 109.47114 * 174.99701 * 5 4 3 8 8 C 1.53007 * 109.47262 * 184.99769 * 7 5 4 9 9 C 1.52995 * 109.47035 * 180.02562 * 8 7 5 10 10 N 1.46498 * 109.46963 * 294.99494 * 5 4 3 11 11 C 1.34777 * 119.99828 * 154.72290 * 10 5 4 12 12 O 1.21353 * 120.00267 * 0.28147 * 11 10 5 13 13 C 1.49454 * 120.00301 * 180.27890 * 11 10 5 14 14 O 1.21353 * 119.99427 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00297 * 180.02562 * 13 11 10 16 16 C 1.47422 * 125.64727 * 359.68530 * 15 13 11 17 17 C 1.55123 * 104.72143 * 155.82070 * 16 15 13 18 18 C 1.55159 * 101.48550 * 37.29421 * 17 16 15 19 19 O 1.42901 * 110.71757 * 82.69776 * 18 17 16 20 20 C 1.50701 * 110.87431 * 205.89495 * 18 17 16 21 21 H 1.08001 * 120.00178 * 355.07233 * 20 18 17 22 22 C 1.37877 * 120.00315 * 175.06447 * 20 18 17 23 23 N 1.31518 * 119.99658 * 0.02562 * 22 20 18 24 24 Si 1.86796 * 120.00208 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47114 * 90.00260 * 24 22 20 26 26 H 1.48505 * 109.46814 * 210.00055 * 24 22 20 27 27 H 1.48496 * 109.47194 * 329.99826 * 24 22 20 28 28 C 1.47020 * 125.64483 * 179.97438 * 15 13 11 29 29 H 1.09004 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47193 * 299.99893 * 1 2 3 31 31 H 1.08998 * 109.46968 * 60.00156 * 1 2 3 32 32 H 1.09002 * 109.47750 * 239.99670 * 2 1 3 33 33 H 1.09007 * 109.46917 * 120.00096 * 2 1 3 34 34 H 1.09002 * 109.46543 * 59.99543 * 3 2 1 35 35 H 1.08998 * 109.46927 * 299.99869 * 3 2 1 36 36 H 1.08997 * 109.47302 * 59.99562 * 4 3 2 37 37 H 1.09007 * 109.46917 * 300.00096 * 4 3 2 38 38 H 1.09000 * 109.47396 * 304.99878 * 7 5 4 39 39 H 1.09005 * 109.47103 * 64.99798 * 7 5 4 40 40 H 1.09000 * 109.47004 * 300.00349 * 8 7 5 41 41 H 1.08997 * 109.46461 * 60.00164 * 8 7 5 42 42 H 1.08999 * 109.47206 * 180.02562 * 9 8 7 43 43 H 1.09000 * 109.47261 * 299.99888 * 9 8 7 44 44 H 1.08997 * 109.47746 * 60.00025 * 9 8 7 45 45 H 0.97001 * 120.00384 * 335.00737 * 10 5 4 46 46 H 1.09001 * 110.36735 * 274.75174 * 16 15 13 47 47 H 1.09000 * 110.36516 * 37.07534 * 16 15 13 48 48 H 1.09005 * 111.19378 * 279.19357 * 17 16 15 49 49 H 1.08996 * 110.94187 * 155.29264 * 17 16 15 50 50 H 0.96699 * 114.00301 * 185.02050 * 19 18 17 51 51 H 0.97000 * 120.00070 * 179.97438 * 23 22 20 52 52 H 1.08991 * 109.88560 * 300.43623 * 28 15 13 53 53 H 1.09007 * 109.88034 * 61.45133 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6450 3.4238 0.8431 7 6 5.6047 2.8868 0.1277 8 6 6.1044 4.3275 0.2537 9 6 7.6292 4.3293 0.3795 10 7 3.6930 3.5403 -1.2505 11 6 3.5608 4.8807 -1.2966 12 8 3.7672 5.5454 -0.3024 13 6 3.1600 5.5488 -2.5720 14 8 2.9541 4.8842 -3.5663 15 7 3.0282 6.8893 -2.6181 16 6 3.2413 7.8129 -1.4891 17 6 3.5840 9.1730 -2.1516 18 6 2.6472 9.1590 -3.3884 19 8 1.3321 9.5893 -3.0314 20 6 3.2050 10.0174 -4.4943 21 1 4.0989 10.5999 -4.3272 22 6 2.5742 10.0591 -5.7196 23 7 1.4854 9.3500 -5.9231 24 14 3.2660 11.1226 -7.0906 25 1 4.2314 10.3294 -7.8932 26 1 2.1583 11.5856 -7.9648 27 1 3.9580 12.2982 -6.5040 28 6 2.6424 7.6720 -3.8013 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8890 37 1 3.9330 0.9287 0.8909 38 1 5.8966 2.3223 1.0133 39 1 6.0433 2.4262 -0.7576 40 1 5.8125 4.8920 -0.6318 41 1 5.6658 4.7879 1.1390 42 1 7.9851 5.3555 0.4697 43 1 7.9214 3.7646 1.2649 44 1 8.0674 3.8689 -0.5059 45 1 3.5280 3.0091 -2.0452 46 1 2.3335 7.8974 -0.8916 47 1 4.0724 7.4720 -0.8718 48 1 4.6304 9.2112 -2.4546 49 1 3.3414 10.0022 -1.4871 50 1 0.6887 9.5259 -3.7504 51 1 1.0413 9.3795 -6.7850 52 1 3.3605 7.5080 -4.6047 53 1 1.6451 7.3796 -4.1302 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332245310.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:10 Heat of formation + Delta-G solvation = -166.045602 kcal Electronic energy + Delta-G solvation = -31296.222119 eV Core-core repulsion = 27166.059583 eV Total energy + Delta-G solvation = -4130.162536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.93344 -40.32334 -38.96683 -38.06721 -36.21336 -35.80089 -34.45820 -34.25315 -31.95481 -31.87776 -29.74134 -29.01542 -27.67248 -25.84702 -25.10522 -23.63700 -22.51473 -21.73406 -21.55790 -21.53688 -20.91227 -19.13572 -18.68054 -18.13299 -17.42221 -17.26671 -16.95098 -16.33014 -16.17766 -16.06015 -15.69871 -15.23016 -15.04740 -14.82180 -14.77931 -14.55482 -14.40453 -14.13570 -14.00216 -13.87066 -13.55443 -13.46991 -13.39282 -12.95438 -12.87485 -12.71844 -12.57722 -12.49589 -12.39075 -12.36968 -12.28522 -12.10006 -12.05357 -11.92519 -11.86805 -11.48299 -11.39200 -11.26888 -11.19908 -10.73948 -10.49312 -10.29782 -10.13998 -9.74224 -8.28085 -6.43833 0.37785 1.30890 1.41720 1.43648 1.53299 2.15486 2.36308 2.54559 2.98360 3.34181 3.56834 3.77664 3.97522 4.02402 4.02944 4.14214 4.15682 4.20982 4.27250 4.34893 4.39574 4.47708 4.58730 4.60396 4.69302 4.69995 4.79901 4.85466 4.91248 4.94262 4.96112 5.00834 5.07025 5.07615 5.08723 5.10331 5.18846 5.26087 5.29013 5.30051 5.32720 5.39419 5.43147 5.49865 5.51211 5.55164 5.71241 6.00204 6.10065 6.38529 6.61903 6.69847 6.97256 7.25447 7.33369 8.78330 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002817 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.285057 B = 9937.750328 C =11101.563391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.124 4.124 4 C -0.117 4.117 5 C 0.142 3.858 6 H 0.082 0.918 7 C -0.124 4.124 8 C -0.121 4.121 9 C -0.149 4.149 10 N -0.682 5.682 11 C 0.520 3.480 12 O -0.519 6.519 13 C 0.497 3.503 14 O -0.564 6.564 15 N -0.585 5.585 16 C 0.111 3.889 17 C -0.115 4.115 18 C 0.234 3.766 19 O -0.587 6.587 20 C -0.557 4.557 21 H 0.067 0.933 22 C 0.027 3.973 23 N -0.915 5.915 24 Si 0.964 3.036 25 H -0.278 1.278 26 H -0.281 1.281 27 H -0.267 1.267 28 C 0.119 3.881 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.413 0.587 46 H 0.067 0.933 47 H 0.106 0.894 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.376 0.624 51 H 0.271 0.729 52 H 0.044 0.956 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 -17.854 14.023 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C -0.162 4.162 4 C -0.155 4.155 5 C 0.039 3.961 6 H 0.100 0.900 7 C -0.162 4.162 8 C -0.159 4.159 9 C -0.206 4.206 10 N -0.335 5.335 11 C 0.300 3.700 12 O -0.396 6.396 13 C 0.281 3.719 14 O -0.444 6.444 15 N -0.317 5.317 16 C -0.011 4.011 17 C -0.153 4.153 18 C 0.194 3.806 19 O -0.395 6.395 20 C -0.595 4.595 21 H 0.085 0.915 22 C -0.174 4.174 23 N -0.554 5.554 24 Si 0.789 3.211 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.191 1.191 28 C -0.004 4.004 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.250 0.750 46 H 0.086 0.914 47 H 0.124 0.876 48 H 0.103 0.897 49 H 0.108 0.892 50 H 0.225 0.775 51 H 0.080 0.920 52 H 0.063 0.937 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.179 -17.751 14.693 23.857 hybrid contribution -0.555 0.507 -2.277 2.398 sum 5.624 -17.244 12.416 21.981 Atomic orbital electron populations 1.21810 0.96430 1.01858 1.01392 1.21502 0.95502 0.96061 1.02674 1.21643 0.95550 0.97418 1.01550 1.21885 0.95294 0.93399 1.04886 1.21411 0.95467 0.94108 0.85151 0.90000 1.22052 0.93631 0.96878 1.03682 1.21555 0.96115 0.97037 1.01179 1.21763 0.95305 1.01490 1.02041 1.45872 1.67232 1.04953 1.15479 1.19576 0.78716 0.84264 0.87415 1.90695 1.49342 1.64035 1.35522 1.20484 0.79647 0.81952 0.89814 1.90694 1.52307 1.63840 1.37603 1.48740 1.63387 1.05133 1.14419 1.22662 1.02311 0.88254 0.87836 1.22855 0.99260 0.96523 0.96614 1.19708 0.81421 0.87324 0.92152 1.86119 1.21715 1.88806 1.42814 1.21792 1.12322 1.28205 0.97169 0.91454 1.25806 0.94896 0.95970 1.00739 1.69793 1.19209 1.40933 1.25418 0.85456 0.78017 0.79027 0.78554 1.20329 1.20656 1.19095 1.22723 0.98124 0.93665 0.85861 0.92002 0.92931 0.93780 0.91659 0.90773 0.92363 0.93551 0.90126 0.87775 0.88360 0.91176 0.94783 0.92435 0.93546 0.91354 0.92932 0.74973 0.91445 0.87628 0.89693 0.89177 0.77475 0.91973 0.93709 0.93951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.91 71.98 0.71 -1.47 16 2 C -0.12 -1.47 5.93 30.59 0.18 -1.29 16 3 C -0.12 -1.81 5.10 30.59 0.16 -1.66 16 4 C -0.12 -1.36 4.75 30.59 0.15 -1.21 16 5 C 0.14 2.43 2.25 44.99 0.10 2.53 16 6 H 0.08 1.64 7.57 -2.39 -0.02 1.62 16 7 C -0.12 -1.93 4.89 30.60 0.15 -1.78 16 8 C -0.12 -2.58 4.54 30.59 0.14 -2.44 16 9 C -0.15 -2.67 9.91 71.98 0.71 -1.95 16 10 N -0.68 -16.05 4.47 -443.86 -1.99 -18.04 16 11 C 0.52 16.43 6.44 87.27 0.56 16.99 16 12 O -0.52 -16.94 10.92 -3.26 -0.04 -16.97 16 13 C 0.50 19.91 7.91 87.27 0.69 20.60 16 14 O -0.56 -25.02 16.80 -3.26 -0.05 -25.08 16 15 N -0.58 -25.05 3.32 -812.95 -2.70 -27.75 16 16 C 0.11 4.22 6.07 86.93 0.53 4.75 16 17 C -0.11 -4.66 6.24 32.06 0.20 -4.46 16 18 C 0.23 11.53 0.85 -10.35 -0.01 11.52 16 19 O -0.59 -30.04 13.07 -148.98 -1.95 -31.99 16 20 C -0.56 -29.30 8.13 25.60 0.21 -29.09 16 21 H 0.07 3.46 7.78 -2.91 -0.02 3.44 16 22 C 0.03 1.41 5.28 84.65 0.45 1.86 16 23 N -0.91 -49.31 10.96 21.45 0.24 -49.07 16 24 Si 0.96 41.92 29.54 68.60 2.03 43.94 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 C 0.12 5.92 5.23 86.73 0.45 6.37 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.86 7.75 -2.39 -0.02 0.85 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.03 0.93 5.66 -2.39 -0.01 0.91 16 41 H 0.06 1.34 7.85 -2.39 -0.02 1.32 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.41 9.31 8.07 -92.71 -0.75 8.56 16 46 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.11 3.66 6.14 -2.39 -0.01 3.65 16 48 H 0.08 3.29 8.05 -2.38 -0.02 3.27 16 49 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 50 H 0.38 19.85 7.45 -74.06 -0.55 19.29 16 51 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 52 H 0.04 2.43 7.81 -2.39 -0.02 2.41 16 53 H 0.04 2.31 7.92 -2.38 -0.02 2.29 16 Total: -1.00 -61.74 416.38 0.51 -61.23 By element: Atomic # 1 Polarization: 44.88 SS G_CDS: -0.40 Total: 44.47 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 5.38 Total: 19.25 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -4.45 Total: -94.86 kcal Atomic # 8 Polarization: -72.00 SS G_CDS: -2.04 Total: -74.04 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -61.74 0.51 -61.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332245310.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.812 kcal (2) G-P(sol) polarization free energy of solvation -61.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds