Wall clock time and date at job start Wed Apr 1 2020 00:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 C 1.53004 * 109.47066 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46735 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47090 * 55.00460 * 5 4 3 7 7 C 1.53006 * 109.46684 * 175.00139 * 5 4 3 8 8 C 1.53004 * 109.47068 * 185.00073 * 7 5 4 9 9 C 1.52996 * 109.47047 * 179.97438 * 8 7 5 10 10 N 1.46491 * 109.47354 * 294.99956 * 5 4 3 11 11 C 1.34777 * 120.00357 * 155.00302 * 10 5 4 12 12 O 1.21358 * 119.99487 * 359.97438 * 11 10 5 13 13 C 1.49452 * 120.00413 * 180.02562 * 11 10 5 14 14 O 1.21345 * 119.99873 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99821 * 179.97438 * 13 11 10 16 16 C 1.47024 * 125.64847 * 359.68794 * 15 13 11 17 17 C 1.54327 * 107.26774 * 179.20685 * 16 15 13 18 18 C 1.55155 * 102.94571 * 337.80617 * 17 16 15 19 19 O 1.42904 * 111.00600 * 277.43113 * 18 17 16 20 20 C 1.50698 * 111.03860 * 153.58728 * 18 17 16 21 21 H 1.07996 * 119.99981 * 6.33913 * 20 18 17 22 22 C 1.37874 * 120.00106 * 186.33083 * 20 18 17 23 23 N 1.31512 * 119.99898 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 120.00200 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46982 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47288 * 120.00111 * 24 22 20 27 27 H 1.48503 * 109.47103 * 240.00479 * 24 22 20 28 28 C 1.47426 * 125.64645 * 179.97438 * 15 13 11 29 29 H 1.09001 * 109.47163 * 299.99497 * 1 2 3 30 30 H 1.09005 * 109.47541 * 59.99991 * 1 2 3 31 31 H 1.09000 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47163 * 240.00503 * 2 1 3 33 33 H 1.08995 * 109.47554 * 120.00540 * 2 1 3 34 34 H 1.09001 * 109.46732 * 60.00239 * 3 2 1 35 35 H 1.08996 * 109.46920 * 300.00391 * 3 2 1 36 36 H 1.08996 * 109.46785 * 60.00337 * 4 3 2 37 37 H 1.08994 * 109.46934 * 300.00464 * 4 3 2 38 38 H 1.09001 * 109.47111 * 305.00018 * 7 5 4 39 39 H 1.09000 * 109.47291 * 64.99728 * 7 5 4 40 40 H 1.09001 * 109.46904 * 300.00458 * 8 7 5 41 41 H 1.09004 * 109.47093 * 60.00140 * 8 7 5 42 42 H 1.09001 * 109.47230 * 300.00005 * 9 8 7 43 43 H 1.09004 * 109.46951 * 60.00186 * 9 8 7 44 44 H 1.09004 * 109.47143 * 179.97438 * 9 8 7 45 45 H 0.97004 * 120.00350 * 335.00132 * 10 5 4 46 46 H 1.08995 * 109.88316 * 298.62177 * 16 15 13 47 47 H 1.09002 * 109.88101 * 59.79072 * 16 15 13 48 48 H 1.08999 * 110.71564 * 219.44370 * 17 16 15 49 49 H 1.08996 * 110.72159 * 96.17410 * 17 16 15 50 50 H 0.96692 * 114.00320 * 173.64830 * 19 18 17 51 51 H 0.96998 * 120.00066 * 179.97438 * 23 22 20 52 52 H 1.09002 * 110.36518 * 322.69812 * 28 15 13 53 53 H 1.08995 * 110.36673 * 84.90922 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 0.8424 7 6 5.6048 2.8868 0.1251 8 6 6.1045 4.3275 0.2511 9 6 7.6293 4.3292 0.3768 10 7 3.6918 3.5408 -1.2512 11 6 3.5649 4.8818 -1.2981 12 8 3.7717 5.5459 -0.3037 13 6 3.1684 5.5507 -2.5744 14 8 2.9612 4.8865 -3.5686 15 7 3.0411 6.8916 -2.6211 16 6 3.2546 7.8124 -1.4950 17 6 3.0160 9.2433 -2.0216 18 6 3.2346 9.0921 -3.5502 19 8 4.6248 9.1462 -3.8767 20 6 2.4624 10.1373 -4.3131 21 1 1.9432 10.9207 -3.7810 22 6 2.4188 10.0937 -5.6905 23 7 3.0507 9.1396 -6.3385 24 14 1.4621 11.3897 -6.6362 25 1 0.8453 12.3449 -5.6810 26 1 2.3829 12.1211 -7.5432 27 1 0.3971 10.7333 -7.4363 28 6 2.6588 7.6775 -3.8084 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6765 1.9563 -0.8899 36 1 3.9329 0.9289 -0.8909 37 1 3.9336 0.9285 0.8890 38 1 5.8974 2.3220 1.0102 39 1 6.0426 2.4266 -0.7608 40 1 5.8118 4.8923 -0.6340 41 1 5.6668 4.7877 1.1370 42 1 7.9216 3.7644 1.2621 43 1 8.0674 3.8688 -0.5088 44 1 7.9854 5.3555 0.4662 45 1 3.5261 3.0099 -2.0459 46 1 2.5489 7.5894 -0.6949 47 1 4.2766 7.7181 -1.1278 48 1 3.7406 9.9369 -1.5951 49 1 1.9977 9.5680 -1.8079 50 1 4.8182 8.9597 -4.8055 51 1 3.0197 9.1087 -7.3075 52 1 3.1003 7.2464 -4.7070 53 1 1.5737 7.7193 -3.9024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332245312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:14 Heat of formation + Delta-G solvation = -167.059725 kcal Electronic energy + Delta-G solvation = -31346.227841 eV Core-core repulsion = 27216.021329 eV Total energy + Delta-G solvation = -4130.206512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90536 -40.31399 -38.92851 -38.05064 -36.17980 -35.79967 -34.46152 -34.25208 -31.96086 -31.93726 -29.71533 -29.01735 -27.66243 -25.85205 -25.10702 -23.57526 -22.51976 -21.72239 -21.57030 -21.54059 -20.86776 -19.15235 -18.65272 -18.12539 -17.38001 -17.11001 -17.05654 -16.30795 -16.21896 -16.10134 -15.62648 -15.32587 -15.06321 -14.85930 -14.68857 -14.57679 -14.40070 -14.08635 -13.95280 -13.86719 -13.53743 -13.45511 -13.31583 -12.95726 -12.87173 -12.73926 -12.57650 -12.50555 -12.39531 -12.37415 -12.20856 -12.11540 -12.07297 -11.93553 -11.86850 -11.49653 -11.39013 -11.27011 -11.22597 -10.74154 -10.53594 -10.31834 -10.13242 -9.63747 -8.26049 -6.42847 0.39967 1.32950 1.42384 1.45411 1.55919 2.17587 2.37179 2.56240 2.99993 3.35978 3.56702 3.76676 3.97319 4.02748 4.04933 4.14405 4.14702 4.20475 4.27063 4.31984 4.39054 4.47488 4.59656 4.65216 4.69039 4.72015 4.77935 4.85089 4.90956 4.94897 4.96909 5.00094 5.04955 5.06599 5.08026 5.14928 5.19214 5.24612 5.28208 5.32158 5.32736 5.39137 5.42631 5.48524 5.51577 5.54003 5.73640 6.02021 6.10476 6.39855 6.64040 6.71012 6.99117 7.25607 7.33873 8.79763 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.002830 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.699910 B = 9891.344853 C =11214.476278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.123 4.123 4 C -0.117 4.117 5 C 0.142 3.858 6 H 0.082 0.918 7 C -0.124 4.124 8 C -0.121 4.121 9 C -0.149 4.149 10 N -0.683 5.683 11 C 0.518 3.482 12 O -0.520 6.520 13 C 0.497 3.503 14 O -0.565 6.565 15 N -0.583 5.583 16 C 0.122 3.878 17 C -0.116 4.116 18 C 0.234 3.766 19 O -0.587 6.587 20 C -0.554 4.554 21 H 0.069 0.931 22 C 0.027 3.973 23 N -0.914 5.914 24 Si 0.965 3.035 25 H -0.265 1.265 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.106 3.894 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.030 0.970 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.043 0.957 45 H 0.413 0.587 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.374 0.626 51 H 0.270 0.730 52 H 0.057 0.943 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -17.242 14.929 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.161 4.161 4 C -0.155 4.155 5 C 0.039 3.961 6 H 0.101 0.899 7 C -0.163 4.163 8 C -0.158 4.158 9 C -0.206 4.206 10 N -0.336 5.336 11 C 0.298 3.702 12 O -0.397 6.397 13 C 0.281 3.719 14 O -0.445 6.445 15 N -0.315 5.315 16 C 0.000 4.000 17 C -0.154 4.154 18 C 0.193 3.807 19 O -0.395 6.395 20 C -0.592 4.592 21 H 0.088 0.912 22 C -0.174 4.174 23 N -0.553 5.553 24 Si 0.791 3.209 25 H -0.189 1.189 26 H -0.206 1.206 27 H -0.207 1.207 28 C -0.016 4.016 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.250 0.750 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.110 0.890 50 H 0.222 0.778 51 H 0.079 0.921 52 H 0.075 0.925 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.516 -17.124 15.633 23.236 hybrid contribution -0.657 0.554 -2.163 2.327 sum 0.858 -16.570 13.470 21.371 Atomic orbital electron populations 1.21806 0.96352 1.01854 1.01430 1.21502 0.95565 0.96069 1.02639 1.21638 0.95413 0.97415 1.01611 1.21882 0.95426 0.93306 1.04842 1.21399 0.95297 0.94164 0.85221 0.89944 1.22057 0.93837 0.96696 1.03666 1.21548 0.96103 0.97129 1.01055 1.21766 0.95358 1.01400 1.02086 1.45861 1.67376 1.04945 1.15467 1.19621 0.78782 0.84253 0.87520 1.90728 1.48998 1.64364 1.35564 1.20458 0.79613 0.82059 0.89756 1.90691 1.52396 1.63871 1.37560 1.48703 1.63376 1.04994 1.14418 1.22122 1.01823 0.88351 0.87679 1.22725 1.02826 0.95273 0.94541 1.19856 0.79486 0.89443 0.91888 1.86123 1.26935 1.94060 1.32374 1.21776 1.32672 1.12660 0.92090 0.91246 1.25818 0.95566 0.97341 0.98660 1.69828 1.43224 1.33270 1.09021 0.85389 0.78219 0.78973 0.78337 1.18890 1.20635 1.20704 1.23026 0.98651 0.93426 0.86467 0.92872 0.93723 0.92045 0.91721 0.90815 0.92270 0.93473 0.90213 0.87790 0.88262 0.91290 0.95091 0.92431 0.91130 0.92996 0.93755 0.75014 0.89780 0.91321 0.89730 0.88990 0.77754 0.92068 0.92462 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.12 -1.45 5.93 30.59 0.18 -1.27 16 3 C -0.12 -1.78 5.10 30.60 0.16 -1.62 16 4 C -0.12 -1.39 4.75 30.60 0.15 -1.24 16 5 C 0.14 2.53 2.26 45.00 0.10 2.63 16 6 H 0.08 1.68 7.58 -2.39 -0.02 1.66 16 7 C -0.12 -2.08 4.89 30.60 0.15 -1.93 16 8 C -0.12 -2.79 4.54 30.59 0.14 -2.65 16 9 C -0.15 -2.95 9.91 71.98 0.71 -2.23 16 10 N -0.68 -16.57 4.48 -443.86 -1.99 -18.55 16 11 C 0.52 16.79 6.42 87.27 0.56 17.35 16 12 O -0.52 -17.48 11.26 -3.27 -0.04 -17.51 16 13 C 0.50 20.18 7.91 87.27 0.69 20.87 16 14 O -0.56 -25.33 16.74 -3.23 -0.05 -25.38 16 15 N -0.58 -25.01 3.33 -813.39 -2.71 -27.71 16 16 C 0.12 4.64 5.49 86.73 0.48 5.12 16 17 C -0.12 -4.66 6.13 31.78 0.19 -4.47 16 18 C 0.23 11.44 0.87 -10.16 -0.01 11.43 16 19 O -0.59 -30.55 13.16 -148.98 -1.96 -32.51 16 20 C -0.55 -28.75 8.27 25.60 0.21 -28.54 16 21 H 0.07 3.51 7.79 -2.91 -0.02 3.48 16 22 C 0.03 1.41 5.29 84.65 0.45 1.86 16 23 N -0.91 -49.22 10.69 21.45 0.23 -48.99 16 24 Si 0.97 41.50 29.54 68.60 2.03 43.53 16 25 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 28 C 0.11 5.23 5.38 86.85 0.47 5.70 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.86 7.75 -2.39 -0.02 0.84 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.03 0.92 5.65 -2.39 -0.01 0.91 16 41 H 0.06 1.43 7.85 -2.39 -0.02 1.41 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 45 H 0.41 9.60 8.07 -92.71 -0.75 8.85 16 46 H 0.08 2.86 7.70 -2.39 -0.02 2.85 16 47 H 0.07 2.63 7.58 -2.39 -0.02 2.62 16 48 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 49 H 0.09 3.41 8.03 -2.39 -0.02 3.39 16 50 H 0.37 20.12 7.56 -74.06 -0.56 19.56 16 51 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 52 H 0.06 3.16 7.33 -2.39 -0.02 3.15 16 53 H 0.05 2.74 8.03 -2.39 -0.02 2.72 16 Total: -1.00 -61.78 416.79 0.44 -61.35 By element: Atomic # 1 Polarization: 46.59 SS G_CDS: -0.41 Total: 46.18 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 5.34 Total: 19.60 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -4.46 Total: -95.26 kcal Atomic # 8 Polarization: -73.35 SS G_CDS: -2.05 Total: -75.40 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -61.78 0.44 -61.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332245312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.713 kcal (2) G-P(sol) polarization free energy of solvation -61.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds