Wall clock time and date at job start Wed Apr 1 2020 00:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34232 * 117.00106 * 2 1 4 4 O 1.20831 * 119.99651 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00446 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47244 * 179.97438 * 5 3 2 7 7 H 1.09003 * 110.82094 * 51.66423 * 6 5 3 8 8 C 1.54897 * 110.75699 * 288.32820 * 6 5 3 9 9 C 1.54268 * 104.19542 * 203.74154 * 8 6 5 10 10 C 1.53877 * 106.59700 * 23.61015 * 9 8 6 11 11 C 1.54260 * 106.60107 * 359.97438 * 10 9 8 12 12 H 1.09001 * 110.48673 * 95.19706 * 11 10 9 13 13 N 1.46503 * 110.48848 * 217.71472 * 11 10 9 14 14 C 1.34783 * 119.99449 * 273.54533 * 13 11 10 15 15 O 1.21590 * 119.99935 * 359.97438 * 14 13 11 16 16 N 1.34779 * 119.99768 * 179.97438 * 14 13 11 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47233 * 299.99500 * 18 17 16 20 20 C 1.52996 * 109.47328 * 59.99969 * 18 17 16 21 21 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 22 22 C 1.50697 * 109.47291 * 179.97438 * 21 18 17 23 23 H 1.08006 * 119.99920 * 359.97438 * 22 21 18 24 24 C 1.37876 * 120.00428 * 179.97438 * 22 21 18 25 25 N 1.31519 * 119.99563 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00432 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46678 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47258 * 119.99423 * 26 24 22 29 29 H 1.48493 * 109.47346 * 240.00028 * 26 24 22 30 30 H 1.09005 * 109.46826 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47620 * 300.00146 * 1 2 3 32 32 H 1.09008 * 109.47198 * 60.00478 * 1 2 3 33 33 H 1.09000 * 109.46810 * 60.00171 * 5 3 2 34 34 H 1.08998 * 109.46800 * 299.99700 * 5 3 2 35 35 H 1.08997 * 110.48327 * 85.06950 * 8 6 5 36 36 H 1.08996 * 110.59723 * 322.47562 * 8 6 5 37 37 H 1.08996 * 110.03255 * 264.32848 * 9 8 6 38 38 H 1.08990 * 110.07222 * 142.91631 * 9 8 6 39 39 H 1.09002 * 110.03373 * 240.71313 * 10 9 8 40 40 H 1.09004 * 110.03133 * 119.28769 * 10 9 8 41 41 H 0.96992 * 120.00655 * 93.54260 * 13 11 10 42 42 H 0.97000 * 119.99708 * 359.97438 * 16 14 13 43 43 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 44 44 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 45 45 H 1.09000 * 109.46986 * 60.00203 * 19 18 17 46 46 H 1.08993 * 109.47662 * 180.02562 * 19 18 17 47 47 H 1.09002 * 109.47075 * 300.00932 * 19 18 17 48 48 H 1.08992 * 109.47554 * 59.99639 * 20 18 17 49 49 H 1.09004 * 109.47108 * 179.97438 * 20 18 17 50 50 H 1.09000 * 109.46870 * 299.99783 * 20 18 17 51 51 H 1.09001 * 109.47109 * 299.99380 * 21 18 17 52 52 H 1.09002 * 109.47508 * 59.99571 * 21 18 17 53 53 H 0.97000 * 119.99425 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7421 -0.0002 7 1 3.5035 3.2934 0.7984 8 6 3.7194 3.3968 -1.3757 9 6 4.7082 4.5792 -1.4406 10 6 5.8652 4.2376 -0.4854 11 6 5.5389 2.8599 0.1271 12 1 6.0314 2.0663 -0.4349 13 7 5.9423 2.8161 1.5348 14 6 7.2041 2.4752 1.8639 15 8 8.0074 2.2036 0.9924 16 7 7.5754 2.4354 3.1589 17 6 8.9471 2.0654 3.5165 18 6 9.1035 2.0971 5.0382 19 6 8.8051 3.5069 5.5523 20 6 8.1260 1.1054 5.6722 21 6 10.5362 1.7113 5.4117 22 6 10.6905 1.7431 6.9104 23 1 9.8508 2.0120 7.5342 24 6 11.9036 1.4289 7.4854 25 7 12.9260 1.1009 6.7259 26 14 12.0947 1.4676 9.3432 27 1 10.8057 1.8637 9.9652 28 1 12.4857 0.1199 9.8288 29 1 13.1446 2.4507 9.7125 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 3.9563 0.7807 -0.8892 34 1 3.9556 0.7811 0.8909 35 1 2.6915 3.7560 -1.4245 36 1 3.9149 2.6913 -2.1832 37 1 4.2155 5.4961 -1.1173 38 1 5.0849 4.6964 -2.4566 39 1 5.9340 4.9888 0.3014 40 1 6.8034 4.1882 -1.0381 41 1 5.3015 3.0324 2.2300 42 1 6.9347 2.6524 3.8540 43 1 9.6436 2.7716 3.0645 44 1 9.1595 1.0608 3.1506 45 1 7.7846 3.7822 5.2862 46 1 8.9169 3.5296 6.6363 47 1 9.5015 4.2134 5.1006 48 1 8.3385 0.1011 5.3059 49 1 8.2378 1.1277 6.7562 50 1 7.1055 1.3808 5.4060 51 1 10.7493 0.7070 5.0454 52 1 11.2323 2.4181 4.9600 53 1 13.7793 0.8795 7.1304 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365193329.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:19 Heat of formation + Delta-G solvation = -169.277562 kcal Electronic energy + Delta-G solvation = -30157.119654 eV Core-core repulsion = 26026.816969 eV Total energy + Delta-G solvation = -4130.302685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67862 -41.13293 -39.49223 -38.46196 -37.40470 -35.20092 -34.68889 -33.68368 -32.90972 -29.25756 -28.97106 -28.62029 -27.92850 -27.26255 -26.47214 -24.75190 -22.35035 -22.16303 -21.24503 -20.99239 -20.02720 -18.95987 -18.55666 -18.33735 -17.90684 -17.45272 -17.17458 -16.54514 -16.50296 -16.02595 -15.86354 -15.42683 -15.18127 -15.02454 -14.70961 -14.53946 -14.34228 -14.31250 -13.94658 -13.91447 -13.80244 -13.37369 -13.02186 -12.93814 -12.85544 -12.68250 -12.58688 -12.51499 -12.31481 -12.20536 -12.07524 -11.92358 -11.81077 -11.78066 -11.69194 -11.50488 -11.43842 -11.32678 -11.30282 -10.94630 -10.81697 -10.50413 -10.27945 -9.69251 -8.12386 -6.19837 1.20042 1.42729 1.43796 1.55401 1.71983 1.83163 2.22705 2.45559 3.22115 3.33773 3.46198 3.57733 3.82117 3.93873 4.02150 4.13464 4.23614 4.26486 4.30729 4.32810 4.36818 4.44932 4.52110 4.57297 4.65338 4.72253 4.73567 4.74398 4.77945 4.82719 4.85792 5.00492 5.09743 5.14277 5.15680 5.19344 5.21704 5.27615 5.44002 5.44234 5.47022 5.52565 5.53394 5.57528 5.62950 5.67439 5.83874 5.92473 6.07859 6.33384 6.74712 6.95599 7.18122 7.47710 7.66946 9.00276 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016829 B = 0.001998 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.386093 B =14009.959898 C =15051.992975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.370 6.370 3 C 0.464 3.536 4 O -0.530 6.530 5 C -0.107 4.107 6 C -0.075 4.075 7 H 0.095 0.905 8 C -0.114 4.114 9 C -0.116 4.116 10 C -0.135 4.135 11 C 0.168 3.832 12 H 0.083 0.917 13 N -0.726 5.726 14 C 0.700 3.300 15 O -0.637 6.637 16 N -0.725 5.725 17 C 0.163 3.837 18 C -0.064 4.064 19 C -0.121 4.121 20 C -0.120 4.120 21 C 0.039 3.961 22 C -0.510 4.510 23 H 0.073 0.927 24 C -0.008 4.008 25 N -0.938 5.938 26 Si 0.959 3.041 27 H -0.256 1.256 28 H -0.285 1.285 29 H -0.286 1.286 30 H 0.126 0.874 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.410 0.590 42 H 0.409 0.591 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.035 0.965 48 H 0.037 0.963 49 H 0.054 0.946 50 H 0.070 0.930 51 H -0.014 1.014 52 H -0.015 1.015 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.560 2.534 -14.604 31.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.309 3.691 4 O -0.420 6.420 5 C -0.144 4.144 6 C -0.094 4.094 7 H 0.113 0.887 8 C -0.152 4.152 9 C -0.154 4.154 10 C -0.174 4.174 11 C 0.062 3.938 12 H 0.101 0.899 13 N -0.382 5.382 14 C 0.400 3.600 15 O -0.519 6.519 16 N -0.381 5.381 17 C 0.038 3.962 18 C -0.064 4.064 19 C -0.178 4.178 20 C -0.177 4.177 21 C 0.001 3.999 22 C -0.549 4.549 23 H 0.091 0.909 24 C -0.204 4.204 25 N -0.580 5.580 26 Si 0.784 3.216 27 H -0.180 1.180 28 H -0.211 1.211 29 H -0.212 1.212 30 H 0.144 0.856 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.247 0.753 42 H 0.247 0.753 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.005 0.995 52 H 0.004 0.996 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -26.904 2.522 -15.369 31.087 hybrid contribution 0.346 0.090 1.415 1.460 sum -26.558 2.612 -13.953 30.114 Atomic orbital electron populations 1.23501 0.75015 1.05445 1.02498 1.86520 1.24873 1.33426 1.83805 1.24079 0.92722 0.81032 0.71313 1.90658 1.67914 1.36950 1.46429 1.21508 0.86361 0.98971 1.07562 1.22109 0.93014 0.93965 1.00337 0.88718 1.22372 0.99772 0.97520 0.95494 1.22040 0.95119 0.98622 0.99588 1.22520 0.98892 0.96744 0.99276 1.21665 0.93674 0.97975 0.80470 0.89887 1.45014 1.10129 1.74005 1.09041 1.16146 0.82983 0.77986 0.82927 1.90897 1.53178 1.58406 1.49407 1.45024 1.13633 1.73757 1.05735 1.21017 0.81587 0.98599 0.95008 1.20701 0.97038 0.97070 0.91600 1.21687 1.00388 0.94395 1.01343 1.21678 0.97578 0.97540 1.00943 1.18979 0.91010 0.94158 0.95709 1.21625 0.96319 1.44179 0.92740 0.90896 1.25967 0.96098 0.95595 1.02780 1.70135 1.02382 1.48550 1.36905 0.85483 0.78492 0.77331 0.80246 1.18011 1.21092 1.21179 0.85626 0.92024 0.91856 0.85838 0.86485 0.90874 0.90573 0.91117 0.90982 0.91623 0.92740 0.75324 0.75345 0.94091 0.93848 0.91167 0.92661 0.94568 0.94414 0.92702 0.91109 0.99519 0.99626 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.55 113.37 1.20 1.47 16 2 O -0.37 -5.36 10.57 -51.43 -0.54 -5.91 16 3 C 0.46 7.05 7.79 71.24 0.56 7.61 16 4 O -0.53 -10.46 14.59 21.95 0.32 -10.14 16 5 C -0.11 -1.21 5.31 29.85 0.16 -1.05 16 6 C -0.08 -0.94 2.04 -9.51 -0.02 -0.96 16 7 H 0.09 1.22 7.76 -2.39 -0.02 1.20 16 8 C -0.11 -1.42 5.76 31.67 0.18 -1.24 16 9 C -0.12 -1.53 6.80 31.32 0.21 -1.31 16 10 C -0.14 -2.37 6.53 31.32 0.20 -2.17 16 11 C 0.17 2.85 2.60 46.06 0.12 2.97 16 12 H 0.08 1.71 7.57 -2.39 -0.02 1.69 16 13 N -0.73 -13.31 5.12 -452.71 -2.32 -15.62 16 14 C 0.70 19.60 8.56 179.05 1.53 21.13 16 15 O -0.64 -24.16 16.05 -4.00 -0.06 -24.23 16 16 N -0.73 -19.26 4.96 -478.52 -2.37 -21.64 16 17 C 0.16 5.77 4.56 86.38 0.39 6.16 16 18 C -0.06 -2.36 0.54 -52.18 -0.03 -2.39 16 19 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 20 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 21 C 0.04 1.98 4.04 29.85 0.12 2.10 16 22 C -0.51 -27.20 7.65 25.60 0.20 -27.00 16 23 H 0.07 3.63 5.68 -2.91 -0.02 3.61 16 24 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 25 N -0.94 -57.07 13.29 21.45 0.28 -56.79 16 26 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 27 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 29 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 30 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 32 H 0.06 0.60 8.13 -2.38 -0.02 0.58 16 33 H 0.12 1.10 7.99 -2.39 -0.02 1.08 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.04 7.39 -2.39 -0.02 1.02 16 36 H 0.08 0.83 7.94 -2.39 -0.02 0.81 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 1.20 8.04 -2.39 -0.02 1.18 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.41 5.02 8.55 -92.71 -0.79 4.23 16 42 H 0.41 8.19 6.18 -92.71 -0.57 7.61 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 44 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 46 H 0.05 1.96 6.61 -2.39 -0.02 1.94 16 47 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.05 1.93 6.62 -2.38 -0.02 1.91 16 50 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16 51 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 52 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 53 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -74.23 417.92 3.32 -70.91 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -0.46 Total: 19.26 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 6.45 Total: -1.40 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -4.41 Total: -94.05 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.29 Total: -40.27 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.23 3.32 -70.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365193329.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.365 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds