Wall clock time and date at job start Tue Mar 31 2020 23:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47185 * 2 1 4 4 C 1.52998 * 109.46742 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.99983 * 58.90484 * 4 3 2 6 6 O 1.20829 * 119.99652 * 266.09248 * 5 4 3 7 7 O 1.34221 * 120.00019 * 86.09499 * 5 4 3 8 8 C 1.45205 * 116.99955 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47160 * 179.97438 * 8 7 5 10 10 C 1.54331 * 109.99248 * 297.86333 * 4 3 2 11 11 C 1.55161 * 103.02193 * 218.66829 * 10 4 3 12 12 C 1.54902 * 101.57889 * 35.30673 * 11 10 4 13 13 N 1.47017 * 109.88055 * 179.97438 * 4 3 2 14 14 C 1.34773 * 125.65053 * 298.39924 * 13 4 3 15 15 O 1.21283 * 119.99672 * 359.70910 * 14 13 4 16 16 C 1.50698 * 120.00352 * 179.71770 * 14 13 4 17 17 H 1.09001 * 109.47122 * 319.99720 * 16 14 13 18 18 N 1.46906 * 109.47167 * 199.99509 * 16 14 13 19 19 C 1.52997 * 109.47342 * 79.99610 * 16 14 13 20 20 C 1.53011 * 109.47134 * 185.00123 * 19 16 14 21 21 C 1.50697 * 109.46746 * 179.97438 * 20 19 16 22 22 H 1.07996 * 120.00457 * 0.02562 * 21 20 19 23 23 C 1.37887 * 119.99417 * 179.97438 * 21 20 19 24 24 N 1.31510 * 120.00162 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99665 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47347 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47210 * 120.00078 * 25 23 21 28 28 H 1.48506 * 109.47086 * 239.99853 * 25 23 21 29 29 H 1.09002 * 109.47058 * 300.00546 * 1 2 3 30 30 H 1.09006 * 109.46887 * 60.00441 * 1 2 3 31 31 H 1.08995 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47087 * 239.99498 * 2 1 3 33 33 H 1.09006 * 109.46887 * 119.99559 * 2 1 3 34 34 H 1.08993 * 109.47051 * 59.99510 * 3 2 1 35 35 H 1.08997 * 109.46795 * 299.99422 * 3 2 1 36 36 H 1.09005 * 109.46670 * 299.99314 * 8 7 5 37 37 H 1.08994 * 109.47549 * 59.99007 * 8 7 5 38 38 H 1.09004 * 109.47760 * 59.99315 * 9 8 7 39 39 H 1.08997 * 109.47168 * 179.97438 * 9 8 7 40 40 H 1.09000 * 109.47166 * 299.99569 * 9 8 7 41 41 H 1.09005 * 110.84872 * 100.19975 * 10 4 3 42 42 H 1.09001 * 110.67070 * 337.04951 * 10 4 3 43 43 H 1.09007 * 111.00271 * 277.23292 * 11 10 4 44 44 H 1.09001 * 111.03841 * 153.39754 * 11 10 4 45 45 H 1.09003 * 110.37052 * 204.15041 * 12 11 10 46 46 H 1.09006 * 110.37143 * 81.83236 * 12 11 10 47 47 H 1.00896 * 111.00309 * 299.99562 * 18 16 14 48 48 H 1.00902 * 110.99923 * 63.95725 * 18 16 14 49 49 H 1.09000 * 109.47278 * 304.99798 * 19 16 14 50 50 H 1.08994 * 109.47510 * 65.00307 * 19 16 14 51 51 H 1.09000 * 109.46772 * 299.99985 * 20 19 16 52 52 H 1.08998 * 109.46554 * 60.00185 * 20 19 16 53 53 H 0.96991 * 119.99848 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0859 0.7108 -1.2117 6 8 4.3594 -0.4638 -1.1374 7 8 4.2416 1.3640 -2.3739 8 6 4.7423 0.5959 -3.4998 9 6 4.8519 1.5026 -4.7273 10 6 4.0971 0.7648 1.2831 11 6 5.3257 1.6348 1.6587 12 6 4.8495 3.0458 1.2323 13 7 4.0701 2.8250 0.0000 14 6 3.8478 3.7402 -0.9640 15 8 3.1884 3.4465 -1.9385 16 6 4.4189 5.1285 -0.8311 17 1 4.3303 5.4603 0.2034 18 7 3.6787 6.0482 -1.7054 19 6 5.8938 5.1144 -1.2376 20 6 6.5057 6.4938 -0.9848 21 6 7.9586 6.4797 -1.3847 22 1 8.4012 5.5774 -1.7800 23 6 8.7226 7.6192 -1.2467 24 7 8.1836 8.7181 -0.7658 25 14 10.5234 7.6020 -1.7431 26 1 10.8838 6.2542 -2.2516 27 1 10.7527 8.6103 -2.8089 28 1 11.3650 7.9281 -0.5638 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 5.7255 0.1931 -3.2563 37 1 4.0567 -0.2239 -3.7141 38 1 5.5373 2.3227 -4.5133 39 1 5.2281 0.9261 -5.5724 40 1 3.8686 1.9051 -4.9707 41 1 4.3992 -0.2632 1.0826 42 1 3.3458 0.7975 2.0722 43 1 6.2066 1.3321 1.0924 44 1 5.5202 1.5953 2.7304 45 1 5.7051 3.6899 1.0295 46 1 4.2193 3.4836 2.0066 47 1 3.7455 5.7620 -2.6706 48 1 2.7149 6.1246 -1.4167 49 1 6.4259 4.3674 -0.6486 50 1 5.9765 4.8688 -2.2963 51 1 5.9736 7.2408 -1.5738 52 1 6.4230 6.7394 0.0740 53 1 8.7211 9.5196 -0.6685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577371950.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:05 Heat of formation + Delta-G solvation = -159.288042 kcal Electronic energy + Delta-G solvation = -32646.505843 eV Core-core repulsion = 28516.636336 eV Total energy + Delta-G solvation = -4129.869506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.44098 -40.76935 -39.04570 -37.57779 -36.78203 -35.75477 -34.77848 -32.86202 -32.53804 -31.90451 -31.21201 -28.13815 -26.88118 -26.02355 -25.16115 -23.79591 -23.09581 -22.83188 -22.12549 -20.96418 -20.26146 -18.87406 -18.44499 -18.17919 -17.80186 -17.44815 -16.92274 -16.52048 -16.30111 -16.15403 -15.76115 -15.46796 -15.21606 -14.92463 -14.73577 -14.55487 -14.34843 -14.16641 -13.89649 -13.84753 -13.70214 -13.51860 -13.39806 -13.28115 -12.95464 -12.84261 -12.80608 -12.59582 -12.49339 -12.37711 -12.17482 -12.07705 -12.06133 -11.87952 -11.79553 -11.64826 -11.58495 -11.54594 -11.34752 -11.18074 -10.90031 -10.48387 -9.76544 -9.58366 -8.13252 -6.22949 0.97157 1.40776 1.42049 1.48551 1.54128 1.73472 1.91851 2.44593 3.16628 3.19805 3.46919 3.56097 3.61765 3.73832 3.82497 3.88158 3.96944 4.00847 4.05055 4.11156 4.12656 4.20388 4.33412 4.35065 4.47983 4.63419 4.68632 4.71822 4.74320 4.77874 4.79628 4.81665 4.85569 4.89690 4.97456 5.03948 5.05423 5.12741 5.18218 5.20521 5.22929 5.29330 5.35727 5.43598 5.58128 5.85671 5.99824 6.11477 6.31719 6.42171 6.54401 6.63707 6.95322 7.13104 7.44919 8.98016 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.003307 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.376698 B = 8465.266019 C = 8819.836906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.113 4.113 4 C 0.171 3.829 5 C 0.458 3.542 6 O -0.530 6.530 7 O -0.338 6.338 8 C 0.053 3.947 9 C -0.141 4.141 10 C -0.113 4.113 11 C -0.128 4.128 12 C 0.083 3.917 13 N -0.610 5.610 14 C 0.503 3.497 15 O -0.539 6.539 16 C 0.094 3.906 17 H 0.106 0.894 18 N -0.816 5.816 19 C -0.077 4.077 20 C 0.043 3.957 21 C -0.541 4.541 22 H 0.051 0.949 23 C 0.005 3.995 24 N -0.927 5.927 25 Si 0.956 3.044 26 H -0.266 1.266 27 H -0.281 1.281 28 H -0.276 1.276 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.059 0.941 44 H 0.125 0.875 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.345 0.655 48 H 0.347 0.653 49 H 0.059 0.941 50 H 0.037 0.963 51 H 0.006 0.994 52 H -0.004 1.004 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 -18.805 5.380 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.151 4.151 4 C 0.084 3.916 5 C 0.301 3.699 6 O -0.420 6.420 7 O -0.253 6.253 8 C -0.021 4.021 9 C -0.198 4.198 10 C -0.150 4.150 11 C -0.166 4.166 12 C -0.038 4.038 13 N -0.345 5.345 14 C 0.290 3.710 15 O -0.415 6.415 16 C -0.022 4.022 17 H 0.124 0.876 18 N -0.345 5.345 19 C -0.115 4.115 20 C 0.006 3.994 21 C -0.579 4.579 22 H 0.070 0.930 23 C -0.193 4.193 24 N -0.568 5.568 25 Si 0.781 3.219 26 H -0.190 1.190 27 H -0.207 1.207 28 H -0.202 1.202 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.142 0.858 43 H 0.078 0.922 44 H 0.144 0.856 45 H 0.096 0.904 46 H 0.121 0.879 47 H 0.158 0.842 48 H 0.160 0.840 49 H 0.077 0.923 50 H 0.056 0.944 51 H 0.024 0.976 52 H 0.014 0.986 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.958 -18.471 5.030 23.117 hybrid contribution 0.593 -0.613 -1.032 1.339 sum -12.365 -19.084 3.997 23.088 Atomic orbital electron populations 1.21718 0.94054 1.02410 1.02177 1.21547 0.97345 0.94733 1.02274 1.21927 0.89976 0.98986 1.04221 1.21227 0.96449 0.82616 0.91320 1.24552 0.73545 0.86317 0.85529 1.90594 1.48238 1.17726 1.85440 1.86860 1.75560 1.43452 1.19459 1.23191 0.98952 0.94897 0.85053 1.21724 1.02943 0.99858 0.95273 1.22866 0.99082 0.99872 0.93213 1.22857 0.96905 0.92508 1.04357 1.22792 0.96089 0.99198 0.85732 1.48808 1.53212 1.10034 1.22491 1.22098 0.79871 0.87815 0.81206 1.90661 1.40483 1.80048 1.30330 1.21545 0.95041 0.85853 0.99775 0.87597 1.58994 1.18029 1.50531 1.06932 1.21333 0.91346 0.99316 0.99511 1.18796 0.93415 0.91971 0.95201 1.21717 0.97122 0.96882 1.42197 0.93031 1.25846 1.02879 0.95260 0.95362 1.70097 1.37771 1.02066 1.46836 0.85541 0.80065 0.78230 0.78049 1.19049 1.20692 1.20166 0.91101 0.93716 0.91644 0.94486 0.89640 0.87931 0.92353 0.91822 0.91111 0.92990 0.87795 0.91978 0.88838 0.85847 0.92194 0.85633 0.90389 0.87886 0.84164 0.83991 0.92262 0.94415 0.97575 0.98606 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.43 16 2 C -0.12 -2.18 5.40 30.60 0.17 -2.01 16 3 C -0.11 -2.32 4.19 30.60 0.13 -2.19 16 4 C 0.17 3.96 0.56 3.21 0.00 3.97 16 5 C 0.46 13.54 5.81 71.24 0.41 13.95 16 6 O -0.53 -16.52 14.70 21.95 0.32 -16.20 16 7 O -0.34 -11.00 6.87 -43.90 -0.30 -11.30 16 8 C 0.05 1.43 6.19 71.98 0.45 1.87 16 9 C -0.14 -3.37 10.29 71.98 0.74 -2.63 16 10 C -0.11 -1.84 4.92 31.79 0.16 -1.68 16 11 C -0.13 -2.04 7.09 31.99 0.23 -1.81 16 12 C 0.08 1.64 6.39 86.84 0.56 2.20 16 13 N -0.61 -15.41 2.81 -769.10 -2.16 -17.57 16 14 C 0.50 15.56 6.25 87.66 0.55 16.11 16 15 O -0.54 -18.88 12.78 19.38 0.25 -18.63 16 16 C 0.09 3.11 2.43 44.17 0.11 3.21 16 17 H 0.11 3.28 7.68 -2.39 -0.02 3.26 16 18 N -0.82 -27.26 8.44 -171.80 -1.45 -28.71 16 19 C -0.08 -3.13 4.64 30.60 0.14 -2.99 16 20 C 0.04 2.24 4.86 29.85 0.15 2.38 16 21 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 22 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 23 C 0.00 0.26 5.46 84.66 0.46 0.72 16 24 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 25 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 28 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 0.85 6.82 -2.39 -0.02 0.84 16 33 H 0.09 1.25 7.19 -2.38 -0.02 1.23 16 34 H 0.10 1.66 8.13 -2.39 -0.02 1.65 16 35 H 0.06 1.55 6.85 -2.39 -0.02 1.53 16 36 H 0.06 1.69 8.13 -2.38 -0.02 1.67 16 37 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.71 6.80 -2.38 -0.02 1.70 16 42 H 0.12 1.24 7.67 -2.39 -0.02 1.22 16 43 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.83 6.05 -2.39 -0.01 1.82 16 46 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.34 11.88 8.58 -89.70 -0.77 11.11 16 48 H 0.35 9.83 9.06 -89.69 -0.81 9.02 16 49 H 0.06 2.30 6.59 -2.39 -0.02 2.29 16 50 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.01 0.33 7.75 -2.39 -0.02 0.31 16 52 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 53 H 0.26 14.87 8.31 -92.72 -0.77 14.09 16 Total: -1.00 -72.41 414.27 3.48 -68.93 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.68 Total: 33.60 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.18 Total: -0.74 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -3.32 Total: -102.02 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: 0.27 Total: -46.13 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -72.41 3.48 -68.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577371950.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.359 kcal (2) G-P(sol) polarization free energy of solvation -72.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds