Wall clock time and date at job start Wed Apr 1 2020 00:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46862 * 2 1 4 4 H 1.08993 * 109.47993 * 304.97466 * 3 2 1 5 5 C 1.53095 * 109.47946 * 184.94150 * 3 2 1 6 6 C 1.53173 * 109.16153 * 182.41101 * 5 3 2 7 7 H 1.08996 * 109.54192 * 176.84653 * 6 5 3 8 8 C 1.50698 * 109.54246 * 297.11030 * 6 5 3 9 9 O 1.21277 * 120.00300 * 9.89882 * 8 6 5 10 10 N 1.34779 * 119.99989 * 189.89416 * 8 6 5 11 11 C 1.46927 * 120.63140 * 5.26628 * 10 8 6 12 12 C 1.52760 * 109.00701 * 233.58580 * 11 10 8 13 13 C 1.53045 * 109.38191 * 305.58340 * 12 11 10 14 14 O 1.42897 * 109.46268 * 301.22301 * 13 12 11 15 15 C 1.53000 * 109.44796 * 181.25463 * 13 12 11 16 16 N 1.46499 * 109.47271 * 59.94012 * 15 13 12 17 17 C 1.36933 * 120.00413 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99928 * 0.02562 * 17 16 15 19 19 C 1.38820 * 120.00381 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99626 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99911 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47365 * 60.00619 * 21 19 17 23 23 H 1.48501 * 109.46895 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47467 * 300.00133 * 21 19 17 25 25 C 1.53039 * 109.53537 * 61.24351 * 13 12 11 26 26 C 1.46927 * 120.63253 * 185.54319 * 10 8 6 27 27 C 1.53177 * 109.03769 * 56.97797 * 6 5 3 28 28 C 1.53087 * 109.16688 * 303.01964 * 27 6 5 29 29 O 1.42906 * 109.47776 * 65.00023 * 3 2 1 30 30 H 1.09002 * 109.47172 * 60.00184 * 1 2 3 31 31 H 1.09002 * 109.47309 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47453 * 299.99921 * 1 2 3 33 33 H 1.09000 * 109.47453 * 240.00079 * 2 1 3 34 34 H 1.09002 * 109.47172 * 119.99816 * 2 1 3 35 35 H 1.09004 * 109.51846 * 302.31391 * 5 3 2 36 36 H 1.08994 * 109.52348 * 62.50157 * 5 3 2 37 37 H 1.09002 * 109.58346 * 353.41195 * 11 10 8 38 38 H 1.08993 * 109.58734 * 113.84403 * 11 10 8 39 39 H 1.09003 * 109.56491 * 185.55311 * 12 11 10 40 40 H 1.08999 * 109.36326 * 65.49874 * 12 11 10 41 41 H 0.96703 * 113.99751 * 300.06704 * 14 13 12 42 42 H 1.09000 * 109.47231 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.47434 * 299.94177 * 15 13 12 44 44 H 0.97002 * 119.99681 * 0.02562 * 16 15 13 45 45 H 0.97000 * 119.99801 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.49931 * 178.68111 * 25 13 12 47 47 H 1.09000 * 109.49818 * 58.58611 * 25 13 12 48 48 H 1.08997 * 109.58734 * 246.15916 * 26 10 8 49 49 H 1.09002 * 109.58675 * 6.58719 * 26 10 8 50 50 H 1.09003 * 109.52198 * 62.92674 * 27 6 5 51 51 H 1.09005 * 109.52312 * 183.10910 * 27 6 5 52 52 H 1.09004 * 109.47914 * 297.62462 * 28 27 6 53 53 H 1.09000 * 109.48393 * 177.59574 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6057 1.9816 -0.8420 5 6 3.5658 1.4446 -0.1243 6 6 4.0733 2.8886 -0.0630 7 1 5.1628 2.8938 -0.0947 8 6 3.5294 3.6642 -1.2350 9 8 2.6698 3.1771 -1.9383 10 7 3.9981 4.8995 -1.5015 11 6 5.1178 5.4577 -0.7310 12 6 4.7059 6.8169 -0.1685 13 6 4.2195 7.7128 -1.3100 14 8 5.2636 7.8651 -2.2736 15 6 3.8361 9.0851 -0.7526 16 7 5.0041 9.6965 -0.1138 17 6 4.9007 10.9356 0.4597 18 1 3.9578 11.4621 0.4415 19 6 6.0074 11.5147 1.0655 20 7 7.1562 10.8729 1.0881 21 14 5.8660 13.2047 1.8485 22 1 4.8457 13.1670 2.9268 23 1 7.1787 13.5959 2.4220 24 1 5.4614 14.1952 0.8186 25 6 2.9991 7.0744 -1.9772 26 6 3.3953 5.7159 -2.5639 27 6 3.5955 3.5310 1.2429 28 6 2.0685 3.4484 1.3144 29 8 1.6619 2.0816 1.2210 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9988 0.8712 0.6954 36 1 3.8544 0.9972 -1.0754 37 1 5.3681 4.7850 0.0893 38 1 5.9832 5.5817 -1.3818 39 1 5.5607 7.2835 0.3212 40 1 3.9018 6.6801 0.5546 41 1 6.0701 8.2647 -1.9199 42 1 3.4900 9.7236 -1.5653 43 1 3.0394 8.9692 -0.0179 44 1 5.8510 9.2238 -0.0978 45 1 7.9296 11.2777 1.5111 46 1 2.6390 7.7241 -2.7748 47 1 2.2111 6.9352 -1.2371 48 1 4.1175 5.8613 -3.3672 49 1 2.5094 5.2135 -2.9526 50 1 4.0291 2.9998 2.0902 51 1 3.9054 4.5758 1.2696 52 1 1.6349 4.0139 0.4896 53 1 1.7258 3.8658 2.2612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484962607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:25 Heat of formation + Delta-G solvation = -150.760122 kcal Electronic energy + Delta-G solvation = -32158.688078 eV Core-core repulsion = 28029.188370 eV Total energy + Delta-G solvation = -4129.499708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.08060 -40.46057 -39.09907 -36.86456 -35.80154 -35.09086 -34.68407 -33.44421 -32.36706 -31.84570 -30.73664 -28.45306 -26.84618 -25.53371 -24.77932 -24.36707 -23.74826 -22.43781 -22.00974 -21.16862 -19.67943 -19.46031 -18.07388 -17.42037 -17.33324 -17.18218 -16.76667 -16.69255 -16.38161 -15.87235 -15.74915 -15.46867 -15.08546 -14.95023 -14.84386 -14.66420 -14.58169 -14.30529 -14.18444 -14.08178 -13.70465 -13.38246 -13.16625 -13.09577 -12.99564 -12.85774 -12.74578 -12.60347 -12.48220 -12.28282 -12.22362 -12.13565 -12.05123 -11.97117 -11.82376 -11.63439 -11.39793 -11.31085 -10.96540 -10.74988 -10.67177 -10.13041 -9.64135 -9.02075 -7.96809 -5.24656 1.48695 1.49766 1.54133 1.55901 1.96436 2.54904 2.87373 3.24556 3.37425 3.40967 3.60178 3.65646 3.72496 3.77180 3.88997 3.93454 3.98787 4.06550 4.22897 4.25216 4.29877 4.32150 4.40172 4.44048 4.53107 4.56627 4.62329 4.66235 4.71479 4.74347 4.81139 4.82465 4.88351 4.90183 4.90734 4.96357 5.03618 5.07426 5.08640 5.10725 5.15846 5.18659 5.31770 5.32859 5.44180 5.49176 5.53955 6.25094 6.34285 6.39657 6.73982 7.12317 7.33637 8.04016 8.29843 9.25476 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.002577 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.630276 B =10863.598519 C =11361.725548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.072 3.928 4 H 0.067 0.933 5 C -0.125 4.125 6 C -0.110 4.110 7 H 0.122 0.878 8 C 0.516 3.484 9 O -0.572 6.572 10 N -0.603 5.603 11 C 0.114 3.886 12 C -0.150 4.150 13 C 0.138 3.862 14 O -0.563 6.563 15 C 0.128 3.872 16 N -0.734 5.734 17 C -0.248 4.248 18 H 0.069 0.931 19 C -0.065 4.065 20 N -0.961 5.961 21 Si 0.967 3.033 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.282 1.282 25 C -0.111 4.111 26 C 0.123 3.877 27 C -0.145 4.145 28 C 0.058 3.942 29 O -0.391 6.391 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.382 0.618 42 H 0.017 0.983 43 H 0.027 0.973 44 H 0.377 0.623 45 H 0.253 0.747 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.087 0.913 52 H 0.028 0.972 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 -21.093 -1.850 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.015 3.985 4 H 0.084 0.916 5 C -0.163 4.163 6 C -0.131 4.131 7 H 0.139 0.861 8 C 0.306 3.694 9 O -0.452 6.452 10 N -0.335 5.335 11 C -0.008 4.008 12 C -0.188 4.188 13 C 0.097 3.903 14 O -0.370 6.370 15 C 0.001 3.999 16 N -0.379 5.379 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.258 4.258 20 N -0.611 5.611 21 Si 0.797 3.203 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.209 1.209 25 C -0.149 4.149 26 C 0.001 3.999 27 C -0.182 4.182 28 C -0.018 4.018 29 O -0.311 6.311 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.231 0.769 42 H 0.035 0.965 43 H 0.045 0.955 44 H 0.211 0.789 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.120 0.880 51 H 0.106 0.894 52 H 0.047 0.953 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.801 -21.557 -2.429 23.053 hybrid contribution 0.913 1.840 0.516 2.118 sum -6.888 -19.717 -1.913 20.973 Atomic orbital electron populations 1.21683 0.95531 1.01907 1.01324 1.21543 0.96615 0.93829 1.03003 1.22556 0.94210 0.94728 0.87045 0.91569 1.21998 0.96293 0.94386 1.03579 1.21482 1.03172 0.95730 0.92753 0.86058 1.21084 0.81402 0.81228 0.85728 1.90586 1.33860 1.69015 1.51767 1.48187 1.34458 1.15171 1.35644 1.21772 0.88376 0.94460 0.96238 1.22369 1.02822 0.95701 0.97957 1.21220 0.88420 0.92485 0.88153 1.86382 1.26703 1.84769 1.39160 1.21431 0.90390 0.93226 0.94811 1.42348 1.09215 1.18617 1.67714 1.19483 0.95808 0.94686 1.28018 0.91283 1.25426 0.95625 1.02081 1.02708 1.69740 1.00963 1.39711 1.50728 0.85309 0.76308 0.80341 0.78357 1.20593 1.22032 1.20857 1.21811 0.95625 0.96128 1.01363 1.21396 0.98882 0.89912 0.89720 1.22273 0.96727 1.02654 0.96595 1.22575 0.94239 0.83046 1.01969 1.87862 1.79150 1.24678 1.39389 0.93744 0.91412 0.93179 0.89880 0.90820 0.88901 0.90603 0.87263 0.90429 0.90575 0.90601 0.76936 0.96482 0.95547 0.78857 0.93855 0.89728 0.90011 0.91050 0.89875 0.88009 0.89436 0.95347 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.81 71.98 0.71 -1.90 16 2 C -0.11 -1.98 5.64 30.59 0.17 -1.80 16 3 C 0.07 1.54 2.36 30.63 0.07 1.61 16 4 H 0.07 1.82 5.46 -2.39 -0.01 1.80 16 5 C -0.12 -2.20 4.60 30.68 0.14 -2.06 16 6 C -0.11 -1.94 2.17 -11.42 -0.02 -1.96 16 7 H 0.12 1.60 7.16 -2.39 -0.02 1.59 16 8 C 0.52 12.19 5.73 87.66 0.50 12.70 16 9 O -0.57 -16.99 13.01 -3.02 -0.04 -17.03 16 10 N -0.60 -13.71 2.98 -819.75 -2.44 -16.15 16 11 C 0.11 2.33 5.26 86.22 0.45 2.78 16 12 C -0.15 -3.84 4.79 30.53 0.15 -3.69 16 13 C 0.14 4.02 0.71 -10.77 -0.01 4.01 16 14 O -0.56 -17.34 11.71 -148.98 -1.74 -19.09 16 15 C 0.13 4.80 5.40 86.38 0.47 5.26 16 16 N -0.73 -33.87 5.07 -343.45 -1.74 -35.61 16 17 C -0.25 -13.16 9.99 84.04 0.84 -12.32 16 18 H 0.07 3.60 7.83 -2.91 -0.02 3.57 16 19 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 20 N -0.96 -54.85 13.06 21.65 0.28 -54.57 16 21 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 C -0.11 -2.80 5.11 30.67 0.16 -2.64 16 26 C 0.12 3.03 6.18 86.36 0.53 3.56 16 27 C -0.14 -2.39 5.25 30.68 0.16 -2.23 16 28 C 0.06 1.20 6.62 72.01 0.48 1.68 16 29 O -0.39 -9.05 9.94 -148.98 -1.48 -10.54 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.99 7.82 -2.39 -0.02 0.97 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.11 1.71 4.67 -2.39 -0.01 1.70 16 38 H 0.08 1.63 7.81 -2.39 -0.02 1.61 16 39 H 0.08 2.26 6.82 -2.39 -0.02 2.24 16 40 H 0.08 1.91 7.57 -2.39 -0.02 1.89 16 41 H 0.38 11.98 7.85 -74.06 -0.58 11.40 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 43 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.38 17.71 5.58 -92.71 -0.52 17.19 16 45 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 46 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.07 1.82 7.81 -2.39 -0.02 1.80 16 49 H 0.08 2.14 7.04 -2.39 -0.02 2.12 16 50 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.09 1.41 5.57 -2.38 -0.01 1.40 16 52 H 0.03 0.69 7.38 -2.38 -0.02 0.67 16 53 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -64.16 394.13 -0.06 -64.22 By element: Atomic # 1 Polarization: 42.65 SS G_CDS: -0.18 Total: 42.46 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.26 Total: -0.10 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.90 Total: -106.33 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -3.26 Total: -46.65 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.16 -0.06 -64.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484962607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.544 kcal (2) G-P(sol) polarization free energy of solvation -64.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds