Wall clock time and date at job start Wed Apr 1 2020 00:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46884 * 2 1 4 4 C 1.52996 * 109.47426 * 120.00267 * 2 1 3 5 5 H 1.09007 * 109.46843 * 299.66322 * 4 2 1 6 6 C 1.50697 * 109.47151 * 59.66175 * 4 2 1 7 7 O 1.21275 * 120.00085 * 104.74673 * 6 4 2 8 8 N 1.34780 * 120.00245 * 284.74571 * 6 4 2 9 9 C 1.47067 * 136.05295 * 355.09431 * 8 6 4 10 10 C 1.53494 * 87.98533 * 207.37474 * 9 8 6 11 11 O 1.42905 * 114.20078 * 87.51989 * 10 9 8 12 12 C 1.50690 * 114.39031 * 220.33200 * 10 9 8 13 13 H 1.08001 * 120.00300 * 93.68651 * 12 10 9 14 14 C 1.37878 * 120.00259 * 273.68534 * 12 10 9 15 15 N 1.31512 * 119.99843 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00162 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46955 * 60.00312 * 16 14 12 18 18 H 1.48499 * 109.47375 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47136 * 300.00575 * 16 14 12 20 20 C 1.47065 * 136.06159 * 175.46598 * 8 6 4 21 21 N 1.46901 * 109.47201 * 179.66391 * 4 2 1 22 22 C 1.47022 * 110.99687 * 182.23247 * 21 4 2 23 23 C 1.53099 * 109.25498 * 182.39525 * 22 21 4 24 24 H 1.09001 * 109.51059 * 63.07821 * 23 22 21 25 25 C 1.52998 * 109.50478 * 183.21553 * 23 22 21 26 26 O 1.43017 * 109.25576 * 303.14800 * 23 22 21 27 27 C 1.43018 * 113.73923 * 58.67304 * 26 23 22 28 28 H 1.09002 * 109.50788 * 61.30598 * 27 26 23 29 29 C 1.53001 * 109.50649 * 181.39365 * 27 26 23 30 30 C 1.47013 * 110.99895 * 305.86499 * 21 4 2 31 31 H 1.09001 * 109.47359 * 298.57957 * 1 2 3 32 32 H 1.09002 * 109.47205 * 58.58497 * 1 2 3 33 33 H 1.09001 * 109.46971 * 178.58049 * 1 2 3 34 34 H 1.08998 * 109.47239 * 240.00237 * 2 1 3 35 35 H 1.09002 * 109.47174 * 185.05425 * 3 2 1 36 36 H 1.08997 * 109.47709 * 305.05630 * 3 2 1 37 37 H 1.09010 * 109.46841 * 65.05883 * 3 2 1 38 38 H 1.08998 * 113.47007 * 322.16033 * 9 8 6 39 39 H 1.09005 * 113.46710 * 92.60003 * 9 8 6 40 40 H 0.96706 * 114.00102 * 86.40608 * 11 10 9 41 41 H 0.97001 * 119.99998 * 179.97438 * 15 14 12 42 42 H 1.09004 * 113.46653 * 267.40390 * 20 8 6 43 43 H 1.08998 * 113.46322 * 37.77878 * 20 8 6 44 44 H 1.08998 * 109.50166 * 302.32351 * 22 21 4 45 45 H 1.08989 * 109.50720 * 62.41417 * 22 21 4 46 46 H 1.09002 * 109.47060 * 60.00216 * 25 23 22 47 47 H 1.09005 * 109.47084 * 179.97438 * 25 23 22 48 48 H 1.08990 * 109.47297 * 299.99623 * 25 23 22 49 49 H 1.08998 * 109.47239 * 60.00495 * 29 27 26 50 50 H 1.09003 * 109.46696 * 179.97438 * 29 27 26 51 51 H 1.08996 * 109.47383 * 299.99698 * 29 27 26 52 52 H 1.08998 * 109.50821 * 297.54152 * 30 21 4 53 53 H 1.08999 * 109.50453 * 57.67712 * 30 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6816 -0.2040 2.1392 6 6 1.5309 -2.1396 1.2533 7 8 2.2789 -3.0532 0.9766 8 7 0.2442 -2.3929 1.5645 9 6 -0.9086 -1.6047 2.0256 10 6 -1.4467 -2.8801 2.6887 11 8 -0.9660 -3.0974 4.0168 12 6 -2.9356 -3.0700 2.5556 13 1 -3.3345 -3.6586 1.7427 14 6 -3.7889 -2.4922 3.4717 15 7 -3.3033 -1.7750 4.4613 16 14 -5.6348 -2.7270 3.3063 17 1 -5.9580 -4.1747 3.3784 18 1 -6.3257 -2.0097 4.4078 19 1 -6.0880 -2.1830 2.0010 20 6 -0.6231 -3.5801 1.5989 21 7 3.5090 -0.7283 1.2450 22 6 4.0356 -1.4607 2.4060 23 6 5.5650 -1.3923 2.3949 24 1 5.8838 -0.3553 2.5003 25 6 6.1218 -2.2196 3.5552 26 8 6.0516 -1.9179 1.1570 27 6 5.5591 -1.2277 0.0052 28 1 5.8784 -0.1861 0.0408 29 6 6.1101 -1.8879 -1.2603 30 6 4.0296 -1.2944 -0.0079 31 1 -0.3634 0.4916 0.9024 32 1 -0.3634 0.5357 -0.8770 33 1 -0.3633 -1.0274 -0.0255 34 1 1.8933 -0.5138 -0.8900 35 1 3.1262 1.4439 -0.0905 36 1 1.6046 1.9819 -0.8412 37 1 1.7524 1.9295 0.9319 38 1 -0.6434 -0.8236 2.7381 39 1 -1.5373 -1.2393 1.2135 40 1 -1.4870 -2.6551 4.7010 41 1 -3.9036 -1.3682 5.1056 42 1 -1.1756 -3.7409 0.6732 43 1 -0.1147 -4.4790 1.9477 44 1 3.6578 -1.0088 3.3232 45 1 3.7167 -2.5016 2.3549 46 1 5.8040 -3.2566 3.4474 47 1 7.2108 -2.1709 3.5465 48 1 5.7476 -1.8209 4.4981 49 1 5.7891 -2.9290 -1.2963 50 1 5.7340 -1.3617 -2.1378 51 1 7.1991 -1.8436 -1.2487 52 1 3.7114 -2.3329 -0.0980 53 1 3.6475 -0.7212 -0.8526 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186814687.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:27 Heat of formation + Delta-G solvation = -95.910017 kcal Electronic energy + Delta-G solvation = -32963.043302 eV Core-core repulsion = 28835.922073 eV Total energy + Delta-G solvation = -4127.121229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.17299 -40.72872 -39.24070 -37.48896 -36.09438 -34.93364 -34.56209 -34.13506 -31.34433 -30.76829 -28.56001 -28.38647 -27.68680 -26.89982 -26.54805 -24.25662 -23.08152 -22.13305 -21.54808 -21.20608 -19.74056 -19.24081 -18.21555 -17.67112 -17.57395 -17.16279 -16.81033 -16.71796 -16.33532 -15.97673 -15.78101 -15.36729 -15.16758 -14.99279 -14.56697 -14.43612 -14.21404 -13.91098 -13.72576 -13.59942 -13.49845 -13.38339 -13.27300 -13.01557 -12.93767 -12.89647 -12.81956 -12.78087 -12.72534 -12.45560 -12.30111 -12.23565 -12.05892 -11.90225 -11.71281 -11.62593 -11.43435 -11.33804 -11.11491 -10.69906 -10.52501 -10.24032 -9.62513 -9.25086 -8.27954 -6.45509 1.47644 1.49483 1.51890 1.57306 1.93625 2.39882 2.58429 2.74367 2.93493 3.38257 3.58676 3.72760 3.80136 3.88996 3.95691 4.06835 4.10958 4.14838 4.20173 4.24801 4.36839 4.38559 4.43769 4.45773 4.55688 4.58279 4.64023 4.66464 4.73141 4.76766 4.82065 4.84064 4.88076 4.89763 4.96095 4.99649 5.00771 5.09361 5.16093 5.17039 5.19645 5.22287 5.27801 5.37581 5.48627 5.71206 5.72678 5.81753 5.90051 6.28657 6.59790 6.86307 7.09161 7.28438 7.46968 8.77594 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017866 B = 0.003242 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.882969 B = 8633.796976 C = 9248.739583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.075 4.075 3 C -0.125 4.125 4 C 0.084 3.916 5 H 0.099 0.901 6 C 0.504 3.496 7 O -0.587 6.587 8 N -0.628 5.628 9 C 0.093 3.907 10 C 0.217 3.783 11 O -0.589 6.589 12 C -0.554 4.554 13 H 0.073 0.927 14 C 0.035 3.965 15 N -0.916 5.916 16 Si 0.969 3.031 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.265 1.265 20 C 0.102 3.898 21 N -0.493 5.493 22 C 0.008 3.992 23 C 0.098 3.902 24 H 0.079 0.921 25 C -0.140 4.140 26 O -0.399 6.399 27 C 0.091 3.909 28 H 0.076 0.924 29 C -0.139 4.139 30 C 0.002 3.998 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.389 0.611 41 H 0.277 0.723 42 H 0.102 0.898 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.031 0.969 46 H 0.044 0.956 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.045 0.955 50 H 0.092 0.908 51 H 0.074 0.926 52 H 0.048 0.952 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.035 8.743 -7.995 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.095 4.095 3 C -0.183 4.183 4 C -0.029 4.029 5 H 0.117 0.883 6 C 0.295 3.705 7 O -0.470 6.470 8 N -0.360 5.360 9 C -0.030 4.030 10 C 0.176 3.824 11 O -0.402 6.402 12 C -0.592 4.592 13 H 0.091 0.909 14 C -0.166 4.166 15 N -0.557 5.557 16 Si 0.794 3.206 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.190 1.190 20 C -0.021 4.021 21 N -0.214 5.214 22 C -0.120 4.120 23 C 0.041 3.959 24 H 0.097 0.903 25 C -0.198 4.198 26 O -0.319 6.319 27 C 0.034 3.966 28 H 0.094 0.906 29 C -0.196 4.196 30 C -0.126 4.126 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.245 0.755 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.064 0.936 50 H 0.111 0.889 51 H 0.093 0.907 52 H 0.066 0.934 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.346 8.431 -8.306 17.837 hybrid contribution -2.041 -0.962 0.674 2.354 sum 11.305 7.469 -7.631 15.551 Atomic orbital electron populations 1.22370 0.94316 1.02198 1.03255 1.21104 0.96100 0.97957 0.94297 1.21649 1.01703 0.92547 1.02360 1.21976 0.88723 0.89833 1.02336 0.88265 1.22110 0.79823 0.93133 0.75465 1.90563 1.55291 1.48675 1.52449 1.49992 1.08257 1.13672 1.64114 1.24174 0.83526 0.97759 0.97527 1.19872 0.91063 0.90994 0.80517 1.86035 1.59262 1.77158 1.17777 1.21614 0.90578 1.33787 1.13218 0.90871 1.25739 1.03794 0.92995 0.94052 1.69312 1.37484 1.33616 1.15253 0.85438 0.78785 0.78226 0.78189 1.20196 1.20774 1.18958 1.23323 0.89622 0.89908 0.99293 1.62817 1.04187 1.51384 1.03052 1.22999 0.97338 0.97439 0.94219 1.22135 0.90405 0.98443 0.84958 0.90349 1.21747 1.02289 0.99488 0.96276 1.87951 1.70174 1.59350 1.14448 1.22265 0.91196 0.96653 0.86509 0.90603 1.21739 1.02098 1.00737 0.95026 1.23199 0.96413 1.00274 0.92669 0.91992 0.90173 0.93207 0.91142 0.91575 0.91080 0.92559 0.92314 0.87836 0.75501 0.91314 0.88008 0.93722 0.90020 0.95105 0.93717 0.90245 0.89465 0.93579 0.88895 0.90691 0.93357 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 7.04 71.98 0.51 -3.69 16 2 C -0.08 -1.88 1.97 -10.80 -0.02 -1.90 16 3 C -0.13 -2.43 8.91 71.98 0.64 -1.79 16 4 C 0.08 2.59 1.77 44.17 0.08 2.67 16 5 H 0.10 3.15 8.14 -2.38 -0.02 3.14 16 6 C 0.50 20.01 6.18 87.66 0.54 20.55 16 7 O -0.59 -26.79 12.59 -3.01 -0.04 -26.82 16 8 N -0.63 -25.78 2.74 -858.79 -2.35 -28.13 16 9 C 0.09 3.77 5.09 83.18 0.42 4.19 16 10 C 0.22 10.29 1.58 -11.21 -0.02 10.27 16 11 O -0.59 -30.93 13.54 -148.98 -2.02 -32.95 16 12 C -0.55 -27.08 8.70 25.60 0.22 -26.86 16 13 H 0.07 3.46 7.81 -2.91 -0.02 3.43 16 14 C 0.03 1.67 5.39 84.66 0.46 2.13 16 15 N -0.92 -45.25 11.01 21.45 0.24 -45.01 16 16 Si 0.97 38.40 29.54 68.60 2.03 40.43 16 17 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 C 0.10 4.47 8.03 83.18 0.67 5.13 16 21 N -0.49 -14.31 4.12 -874.37 -3.60 -17.91 16 22 C 0.01 0.27 4.52 86.31 0.39 0.66 16 23 C 0.10 2.59 3.43 30.63 0.10 2.69 16 24 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 25 C -0.14 -3.21 9.57 71.98 0.69 -2.52 16 26 O -0.40 -11.65 10.11 -148.98 -1.51 -13.16 16 27 C 0.09 2.24 3.43 30.63 0.10 2.35 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 C -0.14 -2.77 9.57 71.98 0.69 -2.08 16 30 C 0.00 0.06 4.08 86.31 0.35 0.41 16 31 H 0.06 1.62 7.07 -2.39 -0.02 1.60 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.52 4.62 -2.39 -0.01 1.51 16 34 H 0.07 1.80 6.26 -2.39 -0.01 1.79 16 35 H 0.07 1.26 7.54 -2.39 -0.02 1.24 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.06 2.43 8.07 -2.39 -0.02 2.41 16 39 H 0.10 3.90 6.10 -2.38 -0.01 3.88 16 40 H 0.39 20.60 6.33 -74.05 -0.47 20.13 16 41 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 42 H 0.10 4.03 8.10 -2.39 -0.02 4.01 16 43 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.03 1.24 5.80 -2.39 -0.01 1.22 16 46 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 48 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.05 1.78 5.43 -2.39 -0.01 1.76 16 53 H 0.10 2.36 5.86 -2.39 -0.01 2.34 16 Total: -1.00 -59.90 395.51 -0.99 -60.89 By element: Atomic # 1 Polarization: 50.04 SS G_CDS: 0.43 Total: 50.47 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.83 Total: 12.21 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -5.72 Total: -91.06 kcal Atomic # 8 Polarization: -69.37 SS G_CDS: -3.56 Total: -72.94 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -59.90 -0.99 -60.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186814687.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.020 kcal (2) G-P(sol) polarization free energy of solvation -59.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds