Wall clock time and date at job start Wed Apr 1 2020 00:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.48717 * 2 1 4 4 O 1.42902 * 109.47859 * 239.97438 * 2 1 3 5 5 C 1.42910 * 114.09279 * 178.86130 * 4 2 1 6 6 C 1.53089 * 109.41716 * 61.15702 * 5 4 2 7 7 C 1.53178 * 109.16197 * 302.38893 * 6 5 4 8 8 C 1.53089 * 109.47991 * 120.03225 * 2 1 3 9 9 H 1.08997 * 109.57597 * 57.65123 * 8 2 1 10 10 C 1.50704 * 109.52117 * 297.49832 * 8 2 1 11 11 O 1.21282 * 119.99786 * 331.24499 * 10 8 2 12 12 N 1.34773 * 119.99984 * 151.24813 * 10 8 2 13 13 C 1.46503 * 120.00010 * 5.37660 * 12 10 8 14 14 C 1.50695 * 109.47254 * 94.80568 * 13 12 10 15 15 H 1.08006 * 120.00097 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99915 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99954 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99654 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47609 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46867 * 120.00225 * 18 16 14 21 21 H 1.48497 * 109.47114 * 239.99820 * 18 16 14 22 22 C 1.46501 * 119.99925 * 185.37341 * 12 10 8 23 23 C 1.53001 * 109.47323 * 270.00051 * 22 12 10 24 24 N 1.46901 * 109.47422 * 180.02562 * 23 22 12 25 25 C 1.47012 * 110.99645 * 293.63755 * 24 23 22 26 26 C 1.53099 * 109.25882 * 177.60764 * 25 24 23 27 27 O 1.43015 * 109.25759 * 56.84264 * 26 25 24 28 28 C 1.43018 * 113.74038 * 301.33366 * 27 26 25 29 29 C 1.47010 * 111.00322 * 169.99948 * 24 23 22 30 30 H 1.08993 * 109.47251 * 299.96549 * 1 2 3 31 31 H 1.09000 * 109.46909 * 59.96958 * 1 2 3 32 32 H 1.09003 * 109.46777 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47925 * 301.16821 * 5 4 2 34 34 H 1.09002 * 109.48649 * 181.14305 * 5 4 2 35 35 H 1.08998 * 109.52103 * 182.48633 * 6 5 4 36 36 H 1.08998 * 109.52446 * 62.29476 * 6 5 4 37 37 H 1.08992 * 109.54595 * 297.11503 * 7 6 5 38 38 H 1.09003 * 109.54011 * 176.84486 * 7 6 5 39 39 H 1.08996 * 109.47206 * 334.79798 * 13 12 10 40 40 H 1.09006 * 109.46565 * 214.80078 * 13 12 10 41 41 H 0.97003 * 119.99825 * 359.97438 * 17 16 14 42 42 H 1.08996 * 109.47327 * 29.99989 * 22 12 10 43 43 H 1.09007 * 109.47411 * 149.99921 * 22 12 10 44 44 H 1.08998 * 109.47174 * 299.99781 * 23 22 12 45 45 H 1.08994 * 109.47117 * 59.99983 * 23 22 12 46 46 H 1.08999 * 109.50874 * 297.53759 * 25 24 23 47 47 H 1.08997 * 109.51166 * 57.67173 * 25 24 23 48 48 H 1.09008 * 109.50303 * 296.91105 * 26 25 24 49 49 H 1.08997 * 109.51106 * 176.78290 * 26 25 24 50 50 H 1.08998 * 109.50303 * 298.73435 * 28 27 26 51 51 H 1.09000 * 109.54162 * 178.62641 * 28 27 26 52 52 H 1.09004 * 109.50355 * 302.32619 * 29 24 23 53 53 H 1.09006 * 109.50411 * 62.40917 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0066 -0.6741 -1.1664 5 6 3.4308 -0.7093 -1.2790 6 6 4.0177 -1.4601 -0.0809 7 6 3.5711 -0.7709 1.2122 8 6 2.0406 -0.7223 1.2495 9 1 1.6443 -1.7375 1.2720 10 6 1.5902 0.0214 2.4804 11 8 1.4082 1.2195 2.4323 12 7 1.3898 -0.6449 3.6347 13 6 1.7218 -2.0689 3.7256 14 6 3.1103 -2.2260 4.2897 15 1 3.6880 -1.3525 4.5536 16 6 3.6437 -3.4850 4.4678 17 7 2.9404 -4.5487 4.1459 18 14 5.3652 -3.6796 5.1663 19 1 5.9407 -2.3394 5.4454 20 1 5.3024 -4.4630 6.4263 21 1 6.2208 -4.3913 4.1831 22 6 0.8400 0.0549 4.7985 23 6 1.9842 0.6370 5.6309 24 7 1.4330 1.3382 6.7982 25 6 0.6689 2.5251 6.3874 26 6 0.0641 3.1902 7.6267 27 8 1.1101 3.5115 8.5475 28 6 1.8742 2.3784 8.9691 29 6 2.4974 1.7053 7.7435 30 1 -0.3633 0.5133 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 3.8193 0.3090 -1.2958 34 1 3.7102 -1.2201 -2.2005 35 1 5.1059 -1.4497 -0.1421 36 1 3.6613 -2.4901 -0.0864 37 1 3.9689 0.2435 1.2409 38 1 3.9392 -1.3328 2.0706 39 1 1.6803 -2.5158 2.7323 40 1 1.0057 -2.5679 4.3787 41 1 2.0463 -4.4475 3.7835 42 1 0.1880 0.8613 4.4630 43 1 0.2679 -0.6457 5.4069 44 1 2.6362 -0.1694 5.9665 45 1 2.5562 1.3375 5.0226 46 1 1.3321 3.2286 5.8840 47 1 -0.1296 2.2269 5.7081 48 1 -0.6400 2.5057 8.1000 49 1 -0.4555 4.1023 7.3333 50 1 1.2228 1.6704 9.4814 51 1 2.6638 2.7029 9.6470 52 1 3.0335 0.8084 8.0540 53 1 3.1903 2.3950 7.2614 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190804358.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:33 Heat of formation + Delta-G solvation = -150.497128 kcal Electronic energy + Delta-G solvation = -32364.804808 eV Core-core repulsion = 28235.316504 eV Total energy + Delta-G solvation = -4129.488304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.72202 -40.59641 -39.66249 -37.53538 -36.58038 -34.77057 -34.64095 -33.74878 -32.26254 -31.18311 -29.05004 -28.76667 -27.27770 -25.63604 -25.08140 -24.95513 -23.75288 -22.97334 -21.64885 -21.42364 -20.15444 -19.02083 -18.48540 -17.57710 -17.46403 -17.18053 -16.93168 -16.53019 -16.28861 -16.07434 -16.00428 -15.82799 -15.68912 -15.49139 -15.19689 -15.09448 -14.55020 -14.36569 -14.20833 -13.90250 -13.79038 -13.55584 -13.49231 -13.25174 -13.19099 -13.09148 -12.88442 -12.63361 -12.55899 -12.38687 -12.30199 -12.04763 -12.00266 -11.95182 -11.78846 -11.55400 -11.34282 -11.17167 -10.83543 -10.74866 -10.50387 -10.40543 -9.63873 -9.49351 -8.60260 -6.36719 1.51776 1.56549 1.58715 1.74335 2.02147 2.52776 2.69570 2.81618 2.93507 3.15710 3.51677 3.60037 3.77342 3.80741 3.85275 3.93238 3.94963 4.03243 4.11623 4.13679 4.14344 4.26108 4.29180 4.34930 4.37603 4.39229 4.53124 4.54391 4.61088 4.66854 4.67129 4.69768 4.74148 4.76348 4.83263 4.84374 4.86758 4.90408 4.96144 4.98315 5.03503 5.12838 5.24042 5.27150 5.52148 5.82382 5.83060 5.88767 6.11445 6.11782 6.18472 6.47001 6.59191 7.14912 7.39330 8.74897 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.004337 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.573222 B = 6455.121492 C = 8743.423083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.111 3.889 3 H 0.060 0.940 4 O -0.388 6.388 5 C 0.058 3.942 6 C -0.146 4.146 7 C -0.112 4.112 8 C -0.127 4.127 9 H 0.088 0.912 10 C 0.527 3.473 11 O -0.585 6.585 12 N -0.592 5.592 13 C 0.238 3.762 14 C -0.601 4.601 15 H 0.046 0.954 16 C -0.013 4.013 17 N -0.928 5.928 18 Si 1.105 2.895 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.279 1.279 22 C 0.133 3.867 23 C 0.062 3.938 24 N -0.535 5.535 25 C 0.015 3.985 26 C 0.068 3.932 27 O -0.402 6.402 28 C 0.069 3.931 29 C 0.015 3.985 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.028 0.972 40 H 0.013 0.987 41 H 0.261 0.739 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.010 0.990 46 H 0.026 0.974 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.117 0.883 50 H 0.067 0.933 51 H 0.119 0.881 52 H 0.089 0.911 53 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 10.232 -0.522 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.052 3.948 3 H 0.078 0.922 4 O -0.307 6.307 5 C -0.018 4.018 6 C -0.184 4.184 7 C -0.150 4.150 8 C -0.148 4.148 9 H 0.106 0.894 10 C 0.316 3.684 11 O -0.467 6.467 12 N -0.321 5.321 13 C 0.116 3.884 14 C -0.639 4.639 15 H 0.065 0.935 16 C -0.214 4.214 17 N -0.565 5.565 18 Si 0.929 3.071 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.205 1.205 22 C 0.010 3.990 23 C -0.067 4.067 24 N -0.261 5.261 25 C -0.113 4.113 26 C -0.008 4.008 27 O -0.321 6.321 28 C -0.008 4.008 29 C -0.113 4.113 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.029 0.971 46 H 0.044 0.956 47 H 0.107 0.893 48 H 0.086 0.914 49 H 0.135 0.865 50 H 0.085 0.915 51 H 0.137 0.863 52 H 0.108 0.892 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.437 9.499 0.074 9.607 hybrid contribution -0.335 1.036 -0.633 1.260 sum -1.772 10.535 -0.560 10.698 Atomic orbital electron populations 1.21742 0.92274 1.02755 1.02928 1.21768 0.95718 0.94276 0.82996 0.92198 1.87889 1.22593 1.78238 1.42007 1.22803 0.79866 1.00304 0.98870 1.22142 1.02352 0.99911 0.93970 1.21537 0.92106 1.01109 1.00290 1.21894 0.98900 1.00668 0.93344 0.89432 1.20556 0.75977 0.86936 0.84934 1.90574 1.54627 1.15410 1.86110 1.48026 1.61650 1.11845 1.10619 1.19321 0.95704 0.76556 0.96783 1.22354 1.00824 0.94555 1.46168 0.93538 1.26795 1.07465 0.91849 0.95290 1.70863 1.12329 1.31851 1.41486 0.83045 0.71605 0.75913 0.76545 1.20348 1.20753 1.20507 1.21217 0.95023 0.96620 0.86178 1.22252 0.96789 0.97023 0.90611 1.62219 1.25233 1.24195 1.14438 1.22886 0.98481 0.91035 0.98879 1.22767 0.89208 1.01086 0.87767 1.87938 1.47443 1.33533 1.63192 1.22756 0.95754 0.87903 0.94342 1.22864 0.93240 1.00507 0.94676 0.91921 0.90092 0.91953 0.92287 0.86239 0.88666 0.91871 0.92359 0.90945 0.95400 0.96934 0.92960 0.90739 0.90058 0.90910 0.97140 0.95579 0.89278 0.91360 0.86482 0.91481 0.86304 0.89225 0.95171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.33 71.98 0.67 -3.44 16 2 C 0.11 3.59 2.44 30.63 0.07 3.66 16 3 H 0.06 2.02 7.77 -2.39 -0.02 2.01 16 4 O -0.39 -11.84 10.41 -148.98 -1.55 -13.39 16 5 C 0.06 1.44 6.84 72.01 0.49 1.93 16 6 C -0.15 -4.17 6.14 30.68 0.19 -3.98 16 7 C -0.11 -3.98 5.29 30.71 0.16 -3.82 16 8 C -0.13 -4.64 1.52 -11.45 -0.02 -4.66 16 9 H 0.09 3.44 6.01 -2.39 -0.01 3.43 16 10 C 0.53 21.26 5.87 87.66 0.51 21.77 16 11 O -0.59 -25.11 15.05 -3.04 -0.05 -25.15 16 12 N -0.59 -24.26 2.46 -826.14 -2.03 -26.29 16 13 C 0.24 10.83 4.42 85.63 0.38 11.21 16 14 C -0.60 -29.67 7.16 25.60 0.18 -29.49 16 15 H 0.05 2.38 6.92 -2.91 -0.02 2.36 16 16 C -0.01 -0.69 5.46 84.66 0.46 -0.23 16 17 N -0.93 -51.09 13.65 21.45 0.29 -50.80 16 18 Si 1.11 46.64 29.90 68.60 2.05 48.69 16 19 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 22 C 0.13 4.90 5.34 86.38 0.46 5.36 16 23 C 0.06 2.27 5.09 86.30 0.44 2.71 16 24 N -0.54 -16.25 4.73 -895.24 -4.23 -20.48 16 25 C 0.02 0.42 5.44 86.32 0.47 0.88 16 26 C 0.07 1.50 7.01 72.02 0.50 2.01 16 27 O -0.40 -9.98 10.83 -148.98 -1.61 -11.59 16 28 C 0.07 1.51 7.01 72.01 0.50 2.02 16 29 C 0.02 0.41 5.64 86.31 0.49 0.90 16 30 H 0.06 1.97 6.81 -2.39 -0.02 1.96 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 3.00 6.43 -2.39 -0.02 2.98 16 39 H 0.03 1.32 5.45 -2.39 -0.01 1.31 16 40 H 0.01 0.61 7.83 -2.38 -0.02 0.59 16 41 H 0.26 14.36 7.22 -92.71 -0.67 13.69 16 42 H 0.07 2.65 5.88 -2.39 -0.01 2.63 16 43 H 0.08 2.93 7.94 -2.38 -0.02 2.91 16 44 H 0.07 2.97 6.62 -2.39 -0.02 2.95 16 45 H 0.01 0.42 8.12 -2.39 -0.02 0.40 16 46 H 0.03 0.78 8.14 -2.39 -0.02 0.77 16 47 H 0.09 2.36 6.38 -2.39 -0.02 2.34 16 48 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 49 H 0.12 2.03 8.14 -2.39 -0.02 2.02 16 50 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 52 H 0.09 2.35 8.09 -2.38 -0.02 2.34 16 53 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -60.29 401.64 -0.17 -60.46 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.98 Total: 31.71 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.98 Total: 6.84 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -5.97 Total: -97.57 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -3.21 Total: -50.14 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.05 Total: 48.69 kcal Total: -60.29 -0.17 -60.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190804358.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.035 kcal (2) G-P(sol) polarization free energy of solvation -60.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds