Wall clock time and date at job start Wed Apr 1 2020 00:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46971 * 2 1 4 4 C 1.52995 * 109.46933 * 120.00207 * 2 1 3 5 5 H 1.08994 * 109.47510 * 58.63858 * 4 2 1 6 6 C 1.50707 * 109.47193 * 298.63378 * 4 2 1 7 7 O 1.21278 * 120.00136 * 272.14988 * 6 4 2 8 8 N 1.34782 * 119.99338 * 92.15136 * 6 4 2 9 9 C 1.47579 * 134.48736 * 185.23518 * 8 6 4 10 10 C 1.53943 * 86.11677 * 155.35226 * 9 8 6 11 11 O 1.42905 * 113.74116 * 269.14987 * 10 9 8 12 12 C 1.50696 * 113.74138 * 137.95183 * 10 9 8 13 13 H 1.08000 * 120.00627 * 5.96289 * 12 10 9 14 14 C 1.37887 * 119.99627 * 185.96789 * 12 10 9 15 15 N 1.31514 * 119.99711 * 183.56790 * 14 12 10 16 16 Si 1.86797 * 120.00303 * 3.84315 * 14 12 10 17 17 H 1.48500 * 109.47020 * 269.72597 * 16 14 12 18 18 H 1.48505 * 109.46742 * 29.72364 * 16 14 12 19 19 H 1.48500 * 109.47181 * 149.72393 * 16 14 12 20 20 C 1.47807 * 134.45795 * 5.08523 * 8 6 4 21 21 N 1.46904 * 109.47062 * 178.63670 * 4 2 1 22 22 C 1.47010 * 110.99967 * 179.97438 * 21 4 2 23 23 C 1.53102 * 109.25906 * 182.39381 * 22 21 4 24 24 H 1.09000 * 109.50215 * 63.08897 * 23 22 21 25 25 C 1.53000 * 109.50718 * 183.21819 * 23 22 21 26 26 O 1.43018 * 109.25541 * 303.15685 * 23 22 21 27 27 C 1.43006 * 113.74068 * 58.66905 * 26 23 22 28 28 H 1.09004 * 109.50831 * 61.26538 * 27 26 23 29 29 C 1.53005 * 109.50812 * 181.34965 * 27 26 23 30 30 C 1.47012 * 111.00101 * 303.63525 * 21 4 2 31 31 H 1.08997 * 109.47520 * 305.36625 * 1 2 3 32 32 H 1.09001 * 109.47103 * 65.36341 * 1 2 3 33 33 H 1.08999 * 109.47449 * 185.36457 * 1 2 3 34 34 H 1.09003 * 109.47169 * 240.00196 * 2 1 3 35 35 H 1.09003 * 109.46493 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47413 * 300.00022 * 3 2 1 37 37 H 1.08997 * 109.46736 * 60.00424 * 3 2 1 38 38 H 1.08997 * 113.77204 * 41.04331 * 9 8 6 39 39 H 1.09001 * 113.86852 * 269.66195 * 9 8 6 40 40 H 0.96699 * 114.00069 * 172.72226 * 11 10 9 41 41 H 0.97005 * 119.99831 * 355.23997 * 15 14 12 42 42 H 1.09006 * 113.76625 * 90.38752 * 20 8 6 43 43 H 1.08999 * 113.84097 * 318.92618 * 20 8 6 44 44 H 1.08999 * 109.51223 * 302.32664 * 22 21 4 45 45 H 1.08998 * 109.50627 * 62.41906 * 22 21 4 46 46 H 1.09001 * 109.46886 * 60.00642 * 25 23 22 47 47 H 1.09003 * 109.46740 * 179.97438 * 25 23 22 48 48 H 1.08997 * 109.47283 * 299.99653 * 25 23 22 49 49 H 1.09003 * 109.46820 * 59.99577 * 29 27 26 50 50 H 1.09003 * 109.47301 * 179.97438 * 29 27 26 51 51 H 1.08996 * 109.47102 * 300.00113 * 29 27 26 52 52 H 1.08996 * 109.50469 * 297.54132 * 30 21 4 53 53 H 1.09001 * 109.50714 * 57.67457 * 30 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6568 -1.7416 1.2615 6 6 1.5654 0.0084 2.4795 7 8 2.2246 0.9175 2.9374 8 7 0.4083 -0.3495 3.0708 9 6 -0.3887 0.1851 4.1919 10 6 -1.5955 -0.4963 3.5216 11 8 -2.2921 0.3446 2.5997 12 6 -2.5149 -1.1928 4.4914 13 1 -2.3490 -1.1001 5.5546 14 6 -3.5679 -1.9487 4.0214 15 7 -4.4114 -2.4990 4.8671 16 14 -3.7920 -2.1977 2.1837 17 1 -4.6553 -1.1188 1.6397 18 1 -2.4674 -2.1570 1.5136 19 1 -4.4314 -3.5151 1.9369 20 6 -0.5727 -1.4337 2.8546 21 7 3.5086 -0.7499 1.2329 22 6 4.0354 -1.4365 2.4213 23 6 5.5655 -1.3910 2.3939 24 1 5.8998 -0.3551 2.4496 25 6 6.1212 -2.1730 3.5858 26 8 6.0331 -1.9791 1.1770 27 6 5.5400 -1.3346 -0.0005 28 1 5.8737 -0.2970 -0.0145 29 6 6.0707 -2.0587 -1.2396 30 6 4.0096 -1.3791 0.0023 31 1 -0.3634 0.5948 0.8380 32 1 -0.3633 0.4284 -0.9341 33 1 -0.3634 -1.0231 0.0961 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 -0.4510 1.2732 4.2072 39 1 -0.1270 -0.2395 5.1611 40 1 -2.9801 -0.1103 2.0950 41 1 -4.2544 -2.4312 5.8220 42 1 -0.3639 -2.3362 3.4292 43 1 -0.7817 -1.6357 1.8040 44 1 3.6726 -0.9382 3.3203 45 1 3.7014 -2.4740 2.4201 46 1 5.7878 -3.2091 3.5279 47 1 7.2106 -2.1406 3.5655 48 1 5.7614 -1.7266 4.5128 49 1 5.7354 -3.0958 -1.2258 50 1 5.6941 -1.5673 -2.1367 51 1 7.1602 -2.0290 -1.2388 52 1 3.6758 -2.4159 -0.0383 53 1 3.6280 -0.8389 -0.8641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251705771.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:41 Heat of formation + Delta-G solvation = -102.082597 kcal Electronic energy + Delta-G solvation = -33027.340256 eV Core-core repulsion = 28899.951364 eV Total energy + Delta-G solvation = -4127.388892 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.97722 -40.81216 -39.43273 -37.48785 -36.11801 -35.13686 -34.66586 -34.62575 -31.34383 -30.76351 -28.61943 -28.18444 -27.70837 -27.16932 -26.60534 -24.19781 -23.20236 -22.23082 -21.56812 -21.13514 -20.04586 -19.48951 -18.26886 -17.81868 -17.65263 -17.54983 -17.11581 -16.54403 -16.36025 -16.00172 -15.63020 -15.36702 -15.24891 -15.12027 -14.94363 -14.58918 -14.35461 -14.15362 -13.89933 -13.77714 -13.73197 -13.52583 -13.35921 -13.13210 -13.06319 -12.89372 -12.83536 -12.76979 -12.57297 -12.51495 -12.17551 -12.01457 -11.99907 -11.92452 -11.81617 -11.65479 -11.43465 -11.26222 -10.99158 -10.77115 -10.60709 -10.34382 -9.65812 -9.48094 -8.82300 -6.61403 1.36707 1.45458 1.54223 1.60964 1.76782 2.40000 2.56002 2.68956 2.84355 3.17998 3.41283 3.70229 3.74226 3.77032 3.82384 3.89024 4.01992 4.04679 4.10976 4.16246 4.27825 4.32969 4.33731 4.40869 4.41965 4.50852 4.54802 4.58058 4.60649 4.64598 4.67830 4.73753 4.79613 4.80097 4.90638 4.91616 4.97777 4.99708 5.03989 5.10044 5.12029 5.15855 5.29795 5.41570 5.46085 5.56154 5.71097 5.84489 5.88887 6.21843 6.36613 6.72067 6.79427 7.14631 7.25438 8.52077 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.003544 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.868350 B = 7898.928289 C = 8345.348162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.077 4.077 3 C -0.131 4.131 4 C 0.084 3.916 5 H 0.060 0.940 6 C 0.541 3.459 7 O -0.568 6.568 8 N -0.633 5.633 9 C 0.123 3.877 10 C 0.196 3.804 11 O -0.556 6.556 12 C -0.615 4.615 13 H 0.034 0.966 14 C -0.012 4.012 15 N -0.927 5.927 16 Si 1.061 2.939 17 H -0.255 1.255 18 H -0.223 1.223 19 H -0.285 1.285 20 C 0.070 3.930 21 N -0.522 5.522 22 C 0.026 3.974 23 C 0.099 3.901 24 H 0.058 0.942 25 C -0.140 4.140 26 O -0.391 6.391 27 C 0.086 3.914 28 H 0.063 0.937 29 C -0.137 4.137 30 C 0.022 3.978 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.362 0.638 41 H 0.257 0.743 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.094 0.906 51 H 0.068 0.932 52 H 0.045 0.955 53 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.760 -0.909 -15.357 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.096 4.096 3 C -0.188 4.188 4 C -0.028 4.028 5 H 0.078 0.922 6 C 0.331 3.669 7 O -0.447 6.447 8 N -0.368 5.368 9 C 0.001 3.999 10 C 0.155 3.845 11 O -0.366 6.366 12 C -0.653 4.653 13 H 0.052 0.948 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.882 3.118 17 H -0.180 1.180 18 H -0.147 1.147 19 H -0.211 1.211 20 C -0.053 4.053 21 N -0.247 5.247 22 C -0.102 4.102 23 C 0.041 3.959 24 H 0.076 0.924 25 C -0.197 4.197 26 O -0.311 6.311 27 C 0.029 3.971 28 H 0.081 0.919 29 C -0.194 4.194 30 C -0.105 4.105 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.213 0.787 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.113 0.887 51 H 0.087 0.913 52 H 0.063 0.937 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 18.015 -0.267 -16.059 24.135 hybrid contribution -0.423 -0.278 2.398 2.450 sum 17.592 -0.545 -13.661 22.280 Atomic orbital electron populations 1.22083 0.94256 1.02320 1.03113 1.21179 0.95988 0.97180 0.95252 1.21666 1.01636 0.94737 1.00787 1.21651 0.88863 0.98307 0.93938 0.92225 1.20439 0.78047 0.83793 0.84644 1.90627 1.55093 1.32634 1.66364 1.50183 1.21666 1.31360 1.33545 1.23126 0.86768 0.99301 0.90728 1.20372 0.88870 0.87776 0.87477 1.86437 1.53049 1.40473 1.56657 1.22411 1.16258 1.33315 0.93345 0.94806 1.27320 0.91220 0.91869 1.10805 1.70908 1.36174 1.45022 1.04005 0.84033 0.79625 0.78309 0.69878 1.18037 1.14664 1.21103 1.24671 0.85940 0.92139 1.02518 1.61932 1.05833 1.53988 1.02904 1.22795 0.97121 0.96445 0.93878 1.22041 0.90737 0.97331 0.85816 0.92354 1.21730 1.02281 1.00417 0.95290 1.87956 1.71346 1.57883 1.13909 1.22315 0.91403 0.97166 0.86243 0.91905 1.21741 1.02066 1.00908 0.94705 1.23046 0.96424 0.98200 0.92843 0.93749 0.89913 0.92068 0.87172 0.91822 0.91201 0.95670 0.91655 0.89454 0.78725 0.93331 0.89061 0.88339 0.91803 0.94393 0.91825 0.90453 0.90576 0.91952 0.88731 0.91319 0.93691 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 7.89 71.98 0.57 -3.39 16 2 C -0.08 -1.80 2.30 -10.80 -0.02 -1.83 16 3 C -0.13 -3.34 8.63 71.98 0.62 -2.72 16 4 C 0.08 2.35 1.56 44.17 0.07 2.42 16 5 H 0.06 1.62 7.74 -2.39 -0.02 1.60 16 6 C 0.54 19.64 4.36 87.66 0.38 20.02 16 7 O -0.57 -24.21 15.46 -3.02 -0.05 -24.26 16 8 N -0.63 -23.90 2.93 -839.68 -2.46 -26.36 16 9 C 0.12 5.16 8.23 86.49 0.71 5.87 16 10 C 0.20 8.48 1.06 -10.88 -0.01 8.47 16 11 O -0.56 -23.59 13.02 -148.98 -1.94 -25.53 16 12 C -0.62 -31.82 9.04 25.60 0.23 -31.59 16 13 H 0.03 1.94 8.04 -2.91 -0.02 1.92 16 14 C -0.01 -0.63 5.47 84.66 0.46 -0.17 16 15 N -0.93 -53.56 13.70 21.45 0.29 -53.26 16 16 Si 1.06 41.25 24.78 68.60 1.70 42.95 16 17 H -0.25 -9.12 6.98 99.48 0.69 -8.43 16 18 H -0.22 -6.98 4.72 99.48 0.47 -6.51 16 19 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 20 C 0.07 2.55 5.99 86.44 0.52 3.07 16 21 N -0.52 -13.62 3.62 -874.38 -3.17 -16.79 16 22 C 0.03 0.71 4.62 86.32 0.40 1.11 16 23 C 0.10 2.35 3.43 30.63 0.10 2.46 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 C -0.14 -2.74 9.57 71.98 0.69 -2.05 16 26 O -0.39 -9.07 10.11 -148.98 -1.51 -10.58 16 27 C 0.09 1.62 3.42 30.63 0.10 1.72 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 C -0.14 -1.74 9.57 71.98 0.69 -1.05 16 30 C 0.02 0.43 4.54 86.31 0.39 0.82 16 31 H 0.04 1.40 6.52 -2.39 -0.02 1.39 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.43 6.47 -2.39 -0.02 1.41 16 34 H 0.11 1.89 6.22 -2.39 -0.01 1.88 16 35 H 0.06 1.62 7.64 -2.39 -0.02 1.60 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.02 0.82 6.54 -2.39 -0.02 0.80 16 38 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.09 3.60 8.09 -2.39 -0.02 3.58 16 40 H 0.36 13.87 4.41 -74.06 -0.33 13.54 16 41 H 0.26 15.20 8.72 -92.70 -0.81 14.39 16 42 H 0.09 3.32 8.09 -2.38 -0.02 3.30 16 43 H 0.10 3.16 4.12 -2.39 -0.01 3.15 16 44 H 0.06 2.08 6.49 -2.39 -0.02 2.06 16 45 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.11 1.71 6.08 -2.39 -0.01 1.69 16 Total: -1.00 -66.28 393.12 -0.94 -67.21 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: 0.28 Total: 43.43 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.91 Total: 3.17 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -5.33 Total: -96.41 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -3.49 Total: -60.36 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.70 Total: 42.95 kcal Total: -66.28 -0.94 -67.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251705771.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.868 kcal (2) G-P(sol) polarization free energy of solvation -66.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds