Wall clock time and date at job start Tue Mar 31 2020 23:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.67778 * 2 1 4 4 C 1.55000 * 110.61623 * 237.03928 * 2 1 3 5 5 C 1.54815 * 102.09094 * 204.47860 * 4 2 1 6 6 H 1.09002 * 110.48878 * 139.55391 * 5 4 2 7 7 C 1.52998 * 110.59469 * 262.14402 * 5 4 2 8 8 C 1.54102 * 104.18860 * 20.87615 * 5 4 2 9 9 H 1.08997 * 109.87822 * 121.60169 * 8 5 4 10 10 C 1.50697 * 109.87950 * 242.60812 * 8 5 4 11 11 O 1.21287 * 120.00034 * 98.13360 * 10 8 5 12 12 N 1.34777 * 119.99971 * 278.13699 * 10 8 5 13 13 C 1.46500 * 120.00052 * 4.59700 * 12 10 8 14 14 C 1.50705 * 109.46770 * 265.10699 * 13 12 10 15 15 H 1.07998 * 119.99880 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99852 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99963 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99812 * 359.72274 * 16 14 13 19 19 H 1.48496 * 109.47206 * 89.99954 * 18 16 14 20 20 H 1.48504 * 109.46851 * 209.99902 * 18 16 14 21 21 H 1.48504 * 109.47148 * 329.99829 * 18 16 14 22 22 C 1.46499 * 119.99990 * 184.59205 * 12 10 8 23 23 C 1.52998 * 109.47222 * 270.00085 * 22 12 10 24 24 N 1.46902 * 109.46861 * 179.97438 * 23 22 12 25 25 C 1.47010 * 111.00354 * 293.63569 * 24 23 22 26 26 C 1.53097 * 109.25742 * 177.60809 * 25 24 23 27 27 O 1.43014 * 109.26144 * 56.84927 * 26 25 24 28 28 C 1.43010 * 113.73580 * 301.33017 * 27 26 25 29 29 C 1.47014 * 110.99867 * 169.99733 * 24 23 22 30 30 O 1.43750 * 107.29337 * 2.03183 * 8 5 4 31 31 H 1.08996 * 109.47681 * 182.96246 * 1 2 3 32 32 H 1.09001 * 109.46927 * 302.96511 * 1 2 3 33 33 H 1.09006 * 109.47419 * 62.96052 * 1 2 3 34 34 H 1.08998 * 110.91015 * 86.27401 * 4 2 1 35 35 H 1.09004 * 110.90424 * 322.67262 * 4 2 1 36 36 H 1.09003 * 109.46627 * 170.64500 * 7 5 4 37 37 H 1.08998 * 109.47474 * 290.64160 * 7 5 4 38 38 H 1.08997 * 109.47130 * 50.64899 * 7 5 4 39 39 H 1.08996 * 109.47368 * 145.10876 * 13 12 10 40 40 H 1.09002 * 109.46891 * 25.10464 * 13 12 10 41 41 H 0.97003 * 119.99938 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.46873 * 30.00128 * 22 12 10 43 43 H 1.09000 * 109.47064 * 149.99568 * 22 12 10 44 44 H 1.08990 * 109.47221 * 299.99683 * 23 22 12 45 45 H 1.09002 * 109.47208 * 60.00465 * 23 22 12 46 46 H 1.08991 * 109.50665 * 297.54160 * 25 24 23 47 47 H 1.09002 * 109.50821 * 57.67230 * 25 24 23 48 48 H 1.09002 * 109.50617 * 296.90895 * 26 25 24 49 49 H 1.09000 * 109.54339 * 176.80917 * 26 25 24 50 50 H 1.09006 * 109.50940 * 298.73516 * 28 27 26 51 51 H 1.08998 * 109.54050 * 178.62389 * 28 27 26 52 52 H 1.09001 * 109.50704 * 302.33329 * 29 24 23 53 53 H 1.09002 * 109.50195 * 62.46224 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2172 5 6 3.4794 -1.2168 -0.7236 6 1 3.6974 -2.2392 -1.0322 7 6 4.5501 -0.2597 -1.2514 8 6 3.3839 -1.1255 0.8117 9 1 3.6069 -2.0958 1.2553 10 6 4.3537 -0.0925 1.3250 11 8 3.9668 1.0280 1.5816 12 7 5.6510 -0.4138 1.4989 13 6 6.1391 -1.7347 1.0947 14 6 6.1202 -2.6621 2.2825 15 1 5.7784 -2.3036 3.2421 16 6 6.5393 -3.9684 2.1439 17 7 6.5232 -4.7776 3.1804 18 14 7.1231 -4.5905 0.4821 19 1 8.5861 -4.3691 0.3568 20 1 6.8304 -6.0418 0.3662 21 1 6.4169 -3.8553 -0.5978 22 6 6.5732 0.5579 2.0919 23 6 7.1974 1.4100 0.9851 24 7 8.1216 2.3847 1.5799 25 6 7.3965 3.3656 2.4003 26 6 8.4005 4.3234 3.0473 27 8 9.1843 4.9459 2.0258 28 6 9.9045 4.0196 1.2081 29 6 8.9158 3.0588 0.5424 30 8 2.0384 -0.7353 1.1337 31 1 -0.3634 -1.0262 0.0531 32 1 -0.3633 0.5592 0.8622 33 1 -0.3634 0.4672 -0.9154 34 1 2.1508 -0.1476 -2.0951 35 1 1.4548 -1.6605 -1.4259 36 1 5.5013 -0.4744 -0.7642 37 1 4.6558 -0.3910 -2.3283 38 1 4.2561 0.7678 -1.0377 39 1 7.1585 -1.6461 0.7192 40 1 5.4964 -2.1352 0.3107 41 1 6.8177 -5.6966 3.0828 42 1 6.0280 1.2017 2.7823 43 1 7.3595 0.0301 2.6315 44 1 7.7425 0.7663 0.2948 45 1 6.4110 1.9378 0.4456 46 1 6.7092 3.9300 1.7703 47 1 6.8358 2.8465 3.1777 48 1 9.0539 3.7665 3.7190 49 1 7.8647 5.0870 3.6111 50 1 10.6017 3.4539 1.8262 51 1 10.4563 4.5630 0.4411 52 1 9.4641 2.3156 -0.0365 53 1 8.2526 3.6183 -0.1174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330372281.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:49 Heat of formation + Delta-G solvation = -135.165208 kcal Electronic energy + Delta-G solvation = -32430.028987 eV Core-core repulsion = 28301.205525 eV Total energy + Delta-G solvation = -4128.823462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.00381 -40.59576 -39.50759 -37.39902 -36.55427 -34.67107 -34.44823 -33.13051 -32.23366 -31.37266 -29.62641 -28.18384 -27.80983 -26.58543 -25.06504 -24.49869 -23.68241 -22.43087 -21.63810 -21.39813 -19.86274 -19.09720 -18.38621 -17.83790 -17.39583 -17.20231 -17.15651 -16.61388 -16.31527 -16.15573 -15.98717 -15.85828 -15.73414 -15.17264 -14.80766 -14.67762 -14.57092 -14.29312 -14.20669 -13.86577 -13.77919 -13.44080 -13.35974 -13.21857 -13.11914 -13.02708 -12.87461 -12.59831 -12.52676 -12.49914 -12.35524 -12.03676 -11.94373 -11.92264 -11.80449 -11.72106 -11.53152 -11.50696 -11.27044 -10.79911 -10.73530 -10.23003 -9.60730 -9.42394 -8.29495 -6.38434 1.40972 1.41967 1.51680 1.56181 2.01181 2.35008 2.77707 2.90195 2.95006 3.04332 3.41950 3.51525 3.66695 3.78109 3.88754 3.96481 4.01913 4.06368 4.12162 4.15634 4.27552 4.33272 4.35680 4.37331 4.43011 4.51226 4.54413 4.55742 4.63813 4.69311 4.69735 4.75204 4.77727 4.78242 4.79368 4.85231 4.86619 4.95782 4.98730 4.99666 5.05918 5.13218 5.25017 5.26888 5.44833 5.56580 5.84185 5.89051 5.90042 6.13681 6.14112 6.54714 6.67945 7.17622 7.29701 8.87133 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008058 B = 0.004477 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3474.066354 B = 6252.582048 C = 8563.835478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 H 0.055 0.945 4 C -0.132 4.132 5 C -0.112 4.112 6 H 0.106 0.894 7 C -0.157 4.157 8 C 0.060 3.940 9 H 0.107 0.893 10 C 0.510 3.490 11 O -0.583 6.583 12 N -0.589 5.589 13 C 0.216 3.784 14 C -0.546 4.546 15 H 0.025 0.975 16 C 0.019 3.981 17 N -0.943 5.943 18 Si 0.938 3.062 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.227 1.227 22 C 0.127 3.873 23 C 0.063 3.937 24 N -0.540 5.540 25 C 0.017 3.983 26 C 0.068 3.932 27 O -0.402 6.402 28 C 0.064 3.936 29 C 0.018 3.982 30 O -0.376 6.376 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.268 0.732 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.026 0.974 46 H 0.031 0.969 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.113 0.887 50 H 0.063 0.937 51 H 0.121 0.879 52 H 0.101 0.899 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.098 12.528 -13.236 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.001 3.999 3 H 0.073 0.927 4 C -0.169 4.169 5 C -0.131 4.131 6 H 0.124 0.876 7 C -0.214 4.214 8 C -0.002 4.002 9 H 0.125 0.875 10 C 0.299 3.701 11 O -0.464 6.464 12 N -0.321 5.321 13 C 0.095 3.905 14 C -0.584 4.584 15 H 0.043 0.957 16 C -0.180 4.180 17 N -0.582 5.582 18 Si 0.760 3.240 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.149 1.149 22 C 0.003 3.997 23 C -0.066 4.066 24 N -0.266 5.266 25 C -0.112 4.112 26 C -0.008 4.008 27 O -0.321 6.321 28 C -0.013 4.013 29 C -0.110 4.110 30 O -0.294 6.294 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.044 0.956 46 H 0.049 0.951 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.131 0.869 50 H 0.082 0.918 51 H 0.139 0.861 52 H 0.119 0.881 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.050 12.834 -12.565 17.961 hybrid contribution -0.192 -0.641 -0.066 0.673 sum -0.242 12.193 -12.631 17.558 Atomic orbital electron populations 1.21759 0.91133 1.03275 1.03325 1.23415 0.96572 0.95061 0.84853 0.92682 1.23258 0.93995 1.01407 0.98218 1.22486 0.97763 1.02488 0.90339 0.87558 1.22129 0.98185 0.98077 1.02969 1.22879 0.82664 0.96581 0.98040 0.87532 1.21260 0.83175 0.88829 0.76858 1.90563 1.78412 1.23435 1.54001 1.47919 1.07842 1.15728 1.60583 1.19754 0.96409 0.79254 0.95100 1.21514 1.44706 0.96079 0.96148 0.95682 1.25836 0.94689 0.96497 1.00936 1.70065 1.48296 1.06900 1.32931 0.85858 0.79993 0.78165 0.80010 1.18853 1.21113 1.14927 1.21210 0.92374 0.90748 0.95320 1.22232 0.94115 0.94072 0.96205 1.62145 1.25066 1.15905 1.23451 1.22822 0.96397 0.93980 0.97952 1.22715 0.92568 0.95928 0.89632 1.87940 1.63191 1.34196 1.46801 1.22820 0.92914 0.90969 0.94601 1.22879 0.96782 0.97876 0.93452 1.88921 1.25139 1.73452 1.41893 0.91378 0.92852 0.88327 0.87643 0.88509 0.92166 0.88963 0.93679 0.93506 0.92561 0.92249 0.92345 0.90418 0.89577 0.95611 0.95076 0.90254 0.91791 0.86895 0.91847 0.86113 0.88084 0.94533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.65 71.98 0.69 -2.34 16 2 C 0.06 1.67 3.73 31.28 0.12 1.79 16 3 H 0.06 1.78 7.69 -2.39 -0.02 1.76 16 4 C -0.13 -2.97 6.15 31.90 0.20 -2.77 16 5 C -0.11 -3.13 2.68 -9.80 -0.03 -3.16 16 6 H 0.11 2.71 8.01 -2.39 -0.02 2.69 16 7 C -0.16 -4.11 7.81 71.98 0.56 -3.55 16 8 C 0.06 2.26 2.98 30.22 0.09 2.35 16 9 H 0.11 4.53 7.02 -2.39 -0.02 4.51 16 10 C 0.51 21.16 4.91 87.66 0.43 21.59 16 11 O -0.58 -26.60 15.54 14.85 0.23 -26.37 16 12 N -0.59 -23.69 1.79 -826.14 -1.48 -25.16 16 13 C 0.22 8.99 2.59 85.63 0.22 9.21 16 14 C -0.55 -28.95 9.60 25.60 0.25 -28.71 16 15 H 0.02 1.56 8.06 -2.91 -0.02 1.53 16 16 C 0.02 1.04 5.47 84.66 0.46 1.50 16 17 N -0.94 -55.89 13.96 21.45 0.30 -55.59 16 18 Si 0.94 38.35 27.47 68.60 1.88 40.24 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.29 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.23 -7.87 6.54 99.48 0.65 -7.22 16 22 C 0.13 4.71 5.33 86.38 0.46 5.17 16 23 C 0.06 1.90 5.28 86.30 0.46 2.36 16 24 N -0.54 -14.58 4.73 -895.24 -4.23 -18.81 16 25 C 0.02 0.45 5.44 86.31 0.47 0.92 16 26 C 0.07 1.52 7.01 72.01 0.50 2.02 16 27 O -0.40 -9.49 10.83 -148.98 -1.61 -11.10 16 28 C 0.06 1.21 7.01 72.02 0.50 1.71 16 29 C 0.02 0.39 5.65 86.31 0.49 0.87 16 30 O -0.38 -14.49 10.58 -131.08 -1.39 -15.88 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 1.53 8.14 -2.38 -0.02 1.52 16 34 H 0.11 1.84 7.87 -2.39 -0.02 1.82 16 35 H 0.10 1.86 8.06 -2.39 -0.02 1.84 16 36 H 0.06 1.76 4.76 -2.39 -0.01 1.75 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.04 1.30 7.64 -2.39 -0.02 1.29 16 39 H 0.05 1.82 7.54 -2.39 -0.02 1.80 16 40 H 0.06 2.17 3.99 -2.39 -0.01 2.16 16 41 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.06 2.31 5.86 -2.38 -0.01 2.30 16 43 H 0.08 3.04 8.07 -2.39 -0.02 3.02 16 44 H 0.09 2.42 8.04 -2.39 -0.02 2.40 16 45 H 0.03 0.84 8.12 -2.39 -0.02 0.82 16 46 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 2.28 6.38 -2.39 -0.02 2.26 16 48 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 51 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.10 1.86 8.09 -2.39 -0.02 1.84 16 53 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -70.40 401.86 0.41 -69.99 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.82 Total: 33.72 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.88 Total: 8.97 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -5.41 Total: -99.57 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -2.77 Total: -53.36 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.88 Total: 40.24 kcal Total: -70.40 0.41 -69.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330372281.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.172 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds