Wall clock time and date at job start Tue Mar 31 2020 23:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.99193 * 2 1 4 4 C 1.54101 * 109.87656 * 238.91715 * 2 1 3 5 5 C 1.54803 * 104.19077 * 238.54661 * 4 2 1 6 6 H 1.08999 * 110.90945 * 97.35396 * 5 4 2 7 7 C 1.52998 * 110.90974 * 220.92505 * 5 4 2 8 8 C 1.54998 * 102.12503 * 339.13949 * 5 4 2 9 9 H 1.09004 * 110.62240 * 278.50899 * 8 5 4 10 10 C 1.50692 * 110.62101 * 155.50413 * 8 5 4 11 11 O 1.21287 * 120.00384 * 267.52675 * 10 8 5 12 12 N 1.34778 * 120.00055 * 87.52979 * 10 8 5 13 13 C 1.46504 * 119.99859 * 5.66990 * 12 10 8 14 14 C 1.50699 * 109.47022 * 95.23969 * 13 12 10 15 15 H 1.07998 * 120.00241 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99634 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99872 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00460 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46954 * 89.99571 * 18 16 14 20 20 H 1.48496 * 109.47556 * 209.99820 * 18 16 14 21 21 H 1.48500 * 109.46910 * 330.00342 * 18 16 14 22 22 C 1.46504 * 120.00374 * 185.66958 * 12 10 8 23 23 C 1.52999 * 109.46789 * 89.99899 * 22 12 10 24 24 N 1.46901 * 109.47006 * 180.02562 * 23 22 12 25 25 C 1.47007 * 111.00244 * 293.63718 * 24 23 22 26 26 C 1.53090 * 109.26185 * 177.60600 * 25 24 23 27 27 O 1.43019 * 109.25936 * 56.84627 * 26 25 24 28 28 C 1.43014 * 113.73730 * 301.33191 * 27 26 25 29 29 C 1.47013 * 111.00086 * 169.99762 * 24 23 22 30 30 O 1.43738 * 109.87572 * 121.09154 * 2 1 3 31 31 H 1.09001 * 109.47476 * 181.07785 * 1 2 3 32 32 H 1.08998 * 109.47132 * 301.08149 * 1 2 3 33 33 H 1.09004 * 109.47045 * 61.08225 * 1 2 3 34 34 H 1.09009 * 110.48584 * 119.86847 * 4 2 1 35 35 H 1.08999 * 110.48976 * 357.23108 * 4 2 1 36 36 H 1.09008 * 109.47415 * 62.97429 * 7 5 4 37 37 H 1.08997 * 109.47529 * 302.97186 * 7 5 4 38 38 H 1.09000 * 109.47364 * 182.97304 * 7 5 4 39 39 H 1.09000 * 109.46735 * 215.24305 * 13 12 10 40 40 H 1.09000 * 109.46928 * 335.24003 * 13 12 10 41 41 H 0.97001 * 120.00596 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.47128 * 209.99893 * 22 12 10 43 43 H 1.09000 * 109.46614 * 330.00222 * 22 12 10 44 44 H 1.09000 * 109.47280 * 299.99900 * 23 22 12 45 45 H 1.08994 * 109.47271 * 60.00283 * 23 22 12 46 46 H 1.09011 * 109.50509 * 297.54281 * 25 24 23 47 47 H 1.09004 * 109.50939 * 57.66733 * 25 24 23 48 48 H 1.08998 * 109.50545 * 296.91238 * 26 25 24 49 49 H 1.08999 * 109.50957 * 176.78152 * 26 25 24 50 50 H 1.08993 * 109.50705 * 298.73036 * 28 27 26 51 51 H 1.08999 * 109.50400 * 178.60033 * 28 27 26 52 52 H 1.09002 * 109.50869 * 302.32482 * 29 24 23 53 53 H 1.09001 * 109.50509 * 62.45680 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0539 -0.7482 -1.2411 5 6 2.9194 -1.8914 -0.6578 6 1 2.3541 -2.8221 -0.6107 7 6 4.2018 -2.0753 -1.4717 8 6 3.2379 -1.3652 0.7649 9 1 4.0688 -0.6601 0.7364 10 6 3.5423 -2.5087 1.6979 11 8 2.6547 -3.0048 2.3591 12 7 4.8009 -2.9803 1.7978 13 6 5.8945 -2.3037 1.0958 14 6 6.5714 -1.3373 2.0333 15 1 6.2223 -1.2374 3.0504 16 6 7.6371 -0.5816 1.5928 17 7 8.2282 0.2615 2.4111 18 14 8.2414 -0.7549 -0.1662 19 1 7.5190 0.2087 -1.0350 20 1 9.6985 -0.4732 -0.2191 21 1 7.9870 -2.1381 -0.6429 22 6 5.0756 -4.1693 2.6084 23 6 4.9489 -5.4207 1.7373 24 7 5.2237 -6.6131 2.5501 25 6 6.6268 -6.6403 2.9880 26 6 6.8541 -7.8643 3.8790 27 8 6.4882 -9.0454 3.1604 28 6 5.1277 -9.0527 2.7195 29 6 4.8830 -7.8407 1.8167 30 8 2.0187 -0.6981 1.1576 31 1 -0.3634 -1.0275 0.0193 32 1 -0.3633 0.5305 0.8801 33 1 -0.3633 0.4969 -0.8996 34 1 2.6619 -0.0858 -1.8575 35 1 1.2246 -1.1547 -1.8199 36 1 4.8059 -1.1701 -1.4075 37 1 3.9465 -2.2684 -2.5135 38 1 4.7670 -2.9181 -1.0739 39 1 6.6176 -3.0431 0.7517 40 1 5.4952 -1.7601 0.2396 41 1 8.9777 0.7935 2.1012 42 1 6.0863 -4.1084 3.0121 43 1 4.3594 -4.2234 3.4283 44 1 3.9383 -5.4817 1.3336 45 1 5.6650 -5.3666 0.9173 46 1 7.2790 -6.6984 2.1165 47 1 6.8502 -5.7339 3.5508 48 1 6.2415 -7.7798 4.7766 49 1 7.9059 -7.9201 4.1595 50 1 4.4649 -9.0029 3.5833 51 1 4.9310 -9.9680 2.1613 52 1 3.8333 -7.8107 1.5245 53 1 5.5072 -7.9180 0.9265 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330372282.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:53 Heat of formation + Delta-G solvation = -136.672818 kcal Electronic energy + Delta-G solvation = -32105.533692 eV Core-core repulsion = 27976.644855 eV Total energy + Delta-G solvation = -4128.888837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.69880 -40.59280 -39.72088 -37.48523 -36.53948 -34.67808 -34.55270 -33.16935 -32.21968 -31.40201 -29.73727 -28.26071 -27.78132 -26.55781 -25.04518 -24.46820 -23.50235 -22.44784 -21.69999 -21.38297 -20.04341 -19.12530 -18.47418 -17.88028 -17.36172 -17.09700 -16.97181 -16.55604 -16.32918 -16.23529 -16.01157 -15.97544 -15.67384 -15.25469 -14.80281 -14.72410 -14.60500 -14.41898 -14.17623 -13.98752 -13.78156 -13.65297 -13.39110 -13.20096 -13.15912 -12.98700 -12.82183 -12.53334 -12.49882 -12.41758 -12.33550 -12.25373 -12.13005 -11.87341 -11.74750 -11.64772 -11.50883 -11.42684 -10.87153 -10.82138 -10.73205 -10.50858 -9.62793 -9.41820 -8.32659 -6.41667 1.36132 1.38747 1.44874 1.48397 1.89287 2.31490 2.73263 2.92996 3.00816 3.01712 3.38978 3.48202 3.79490 3.84385 3.87400 3.95802 3.96548 4.04303 4.12431 4.16077 4.17744 4.29655 4.34550 4.35850 4.41347 4.44803 4.55226 4.59610 4.61850 4.69335 4.70602 4.72772 4.77657 4.79583 4.83281 4.85464 4.88789 4.93576 4.98039 5.00100 5.10329 5.14484 5.26473 5.30196 5.41409 5.54152 5.82852 5.90559 5.93270 6.11247 6.14901 6.50493 6.64205 7.13469 7.26029 8.84184 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008676 B = 0.004176 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.549449 B = 6703.429887 C = 8809.100663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 H 0.073 0.927 4 C -0.135 4.135 5 C -0.102 4.102 6 H 0.083 0.917 7 C -0.152 4.152 8 C 0.059 3.941 9 H 0.089 0.911 10 C 0.520 3.480 11 O -0.579 6.579 12 N -0.587 5.587 13 C 0.208 3.792 14 C -0.549 4.549 15 H 0.023 0.977 16 C 0.020 3.980 17 N -0.942 5.942 18 Si 0.933 3.067 19 H -0.252 1.252 20 H -0.285 1.285 21 H -0.232 1.232 22 C 0.126 3.874 23 C 0.063 3.937 24 N -0.544 5.544 25 C 0.011 3.989 26 C 0.067 3.933 27 O -0.401 6.401 28 C 0.064 3.936 29 C 0.019 3.981 30 O -0.384 6.384 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.269 0.731 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.084 0.916 48 H 0.061 0.939 49 H 0.115 0.885 50 H 0.060 0.940 51 H 0.121 0.879 52 H 0.094 0.906 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 -11.327 -11.363 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.004 4.004 3 H 0.091 0.909 4 C -0.172 4.172 5 C -0.121 4.121 6 H 0.102 0.898 7 C -0.208 4.208 8 C -0.001 4.001 9 H 0.106 0.894 10 C 0.309 3.691 11 O -0.459 6.459 12 N -0.318 5.318 13 C 0.087 3.913 14 C -0.587 4.587 15 H 0.041 0.959 16 C -0.179 4.179 17 N -0.581 5.581 18 Si 0.754 3.246 19 H -0.176 1.176 20 H -0.211 1.211 21 H -0.155 1.155 22 C 0.002 3.998 23 C -0.066 4.066 24 N -0.270 5.270 25 C -0.117 4.117 26 C -0.009 4.009 27 O -0.320 6.320 28 C -0.012 4.012 29 C -0.109 4.109 30 O -0.304 6.304 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.133 0.867 50 H 0.079 0.921 51 H 0.139 0.861 52 H 0.113 0.887 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.462 -11.593 -10.410 17.731 hybrid contribution 1.125 0.900 -0.437 1.506 sum -7.337 -10.693 -10.847 16.906 Atomic orbital electron populations 1.21917 0.92070 1.02706 1.03320 1.23127 0.96583 0.95958 0.84765 0.90920 1.23110 1.00483 0.96343 0.97281 1.22589 0.98534 1.00004 0.91019 0.89845 1.22009 0.95340 1.02333 1.01165 1.23183 0.89507 0.93029 0.94410 0.89379 1.20518 0.82228 0.83928 0.82453 1.90596 1.46984 1.61634 1.46698 1.47795 1.06998 1.28082 1.48933 1.20031 0.85653 0.92631 0.93002 1.21535 1.15911 1.22889 0.98412 0.95850 1.25824 0.95729 0.93774 1.02550 1.70065 1.23580 1.26117 1.38371 0.85935 0.78093 0.81347 0.79200 1.17587 1.21109 1.15510 1.21229 1.01540 0.83342 0.93661 1.22207 1.01021 0.89049 0.94336 1.62095 1.21641 1.02159 1.41059 1.22910 0.88298 1.00679 0.99787 1.22724 1.02100 0.82665 0.93457 1.87945 1.29206 1.40387 1.74489 1.22799 0.82779 0.97862 0.97787 1.22857 1.02379 0.89775 0.95909 1.88947 1.38894 1.67384 1.35143 0.92493 0.92848 0.88123 0.88284 0.87583 0.92009 0.88562 0.92511 0.93742 0.91609 0.92177 0.90663 0.91739 0.91039 0.94050 0.94056 0.89779 0.92077 0.86722 0.92148 0.86095 0.88748 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.36 71.98 0.67 -2.41 16 2 C 0.05 1.42 4.06 30.97 0.13 1.54 16 3 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.13 -2.85 6.23 31.58 0.20 -2.65 16 5 C -0.10 -2.78 3.14 -9.50 -0.03 -2.81 16 6 H 0.08 2.32 8.05 -2.39 -0.02 2.30 16 7 C -0.15 -3.57 7.72 71.98 0.56 -3.01 16 8 C 0.06 2.24 2.63 30.53 0.08 2.32 16 9 H 0.09 3.59 6.51 -2.38 -0.02 3.57 16 10 C 0.52 22.58 6.96 87.65 0.61 23.19 16 11 O -0.58 -28.36 16.25 14.03 0.23 -28.13 16 12 N -0.59 -24.30 2.46 -826.14 -2.03 -26.33 16 13 C 0.21 8.79 3.06 85.63 0.26 9.05 16 14 C -0.55 -29.52 9.94 25.60 0.25 -29.27 16 15 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 16 C 0.02 1.09 5.47 84.65 0.46 1.55 16 17 N -0.94 -55.97 13.96 21.45 0.30 -55.67 16 18 Si 0.93 38.16 27.47 68.60 1.88 40.04 16 19 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 20 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.23 -8.30 6.54 99.48 0.65 -7.65 16 22 C 0.13 4.75 5.41 86.38 0.47 5.22 16 23 C 0.06 1.92 5.28 86.30 0.46 2.38 16 24 N -0.54 -14.78 4.73 -895.23 -4.23 -19.01 16 25 C 0.01 0.29 5.44 86.31 0.47 0.76 16 26 C 0.07 1.48 7.01 72.01 0.50 1.99 16 27 O -0.40 -9.41 10.83 -148.98 -1.61 -11.02 16 28 C 0.06 1.24 7.01 72.02 0.50 1.75 16 29 C 0.02 0.41 5.64 86.31 0.49 0.89 16 30 O -0.38 -14.95 10.56 -131.89 -1.39 -16.34 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.72 7.86 -2.38 -0.02 1.70 16 35 H 0.11 1.70 7.70 -2.39 -0.02 1.68 16 36 H 0.06 1.53 7.25 -2.38 -0.02 1.52 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.45 6.81 -2.39 -0.02 1.43 16 39 H 0.04 1.78 7.17 -2.39 -0.02 1.76 16 40 H 0.07 2.54 2.32 -2.39 -0.01 2.53 16 41 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.08 2.91 6.45 -2.39 -0.02 2.89 16 43 H 0.06 2.69 7.35 -2.39 -0.02 2.67 16 44 H 0.07 2.24 8.04 -2.39 -0.02 2.23 16 45 H 0.04 1.23 8.12 -2.39 -0.02 1.21 16 46 H 0.04 1.07 8.14 -2.38 -0.02 1.06 16 47 H 0.08 2.31 6.38 -2.38 -0.02 2.29 16 48 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.09 1.86 8.09 -2.39 -0.02 1.84 16 53 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -72.96 405.36 0.05 -72.91 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.82 Total: 33.07 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 6.08 Total: 10.49 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -5.96 Total: -101.01 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -2.78 Total: -55.49 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.88 Total: 40.04 kcal Total: -72.96 0.05 -72.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330372282.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.764 kcal (2) G-P(sol) polarization free energy of solvation -72.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds