Wall clock time and date at job start Tue Mar 31 2020 23:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.27663 * 2 1 4 4 C 1.54954 * 110.30846 * 237.80830 * 2 1 3 5 5 C 1.55306 * 100.94033 * 204.64163 * 4 2 1 6 6 H 1.08998 * 110.84561 * 275.93955 * 5 4 2 7 7 C 1.53003 * 111.02083 * 152.40315 * 5 4 2 8 8 C 1.54379 * 102.25698 * 34.13131 * 5 4 2 9 9 H 1.09000 * 109.83104 * 98.15407 * 8 5 4 10 10 C 1.50696 * 109.83127 * 219.13146 * 8 5 4 11 11 O 1.21284 * 120.00258 * 69.79093 * 10 8 5 12 12 N 1.34782 * 120.00179 * 249.78765 * 10 8 5 13 13 C 1.46497 * 119.99496 * 5.06618 * 12 10 8 14 14 C 1.50699 * 109.47374 * 85.61756 * 13 12 10 15 15 H 1.08000 * 119.99796 * 5.12782 * 14 13 12 16 16 C 1.37878 * 119.99995 * 185.14210 * 14 13 12 17 17 N 1.31518 * 119.99813 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00332 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47200 * 90.00433 * 18 16 14 20 20 H 1.48495 * 109.47227 * 210.00910 * 18 16 14 21 21 H 1.48501 * 109.46850 * 330.00295 * 18 16 14 22 22 C 1.46490 * 120.00363 * 185.06329 * 12 10 8 23 23 C 1.52998 * 109.47495 * 90.00237 * 22 12 10 24 24 N 1.46897 * 109.47670 * 180.02562 * 23 22 12 25 25 C 1.47019 * 110.99560 * 293.63558 * 24 23 22 26 26 C 1.53098 * 109.25474 * 177.60475 * 25 24 23 27 27 O 1.43016 * 109.25795 * 56.84836 * 26 25 24 28 28 C 1.43016 * 113.73836 * 301.32641 * 27 26 25 29 29 C 1.47011 * 111.00444 * 169.99952 * 24 23 22 30 30 O 1.43239 * 107.58640 * 338.64573 * 8 5 4 31 31 H 1.08999 * 109.47249 * 299.35942 * 1 2 3 32 32 H 1.09000 * 109.47096 * 59.35933 * 1 2 3 33 33 H 1.09000 * 109.47326 * 179.36069 * 1 2 3 34 34 H 1.08999 * 111.12633 * 86.72128 * 4 2 1 35 35 H 1.09002 * 111.12103 * 322.55677 * 4 2 1 36 36 H 1.08999 * 109.46782 * 300.01936 * 7 5 4 37 37 H 1.08998 * 109.47073 * 60.01704 * 7 5 4 38 38 H 1.08998 * 109.47022 * 180.02562 * 7 5 4 39 39 H 1.09006 * 109.47075 * 205.61327 * 13 12 10 40 40 H 1.09004 * 109.47615 * 325.61304 * 13 12 10 41 41 H 0.96998 * 119.99957 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.47302 * 210.00346 * 22 12 10 43 43 H 1.09003 * 109.47184 * 330.00029 * 22 12 10 44 44 H 1.09003 * 109.46935 * 300.00334 * 23 22 12 45 45 H 1.09003 * 109.47074 * 59.99725 * 23 22 12 46 46 H 1.08996 * 109.50630 * 297.53998 * 25 24 23 47 47 H 1.08996 * 109.50745 * 57.67165 * 25 24 23 48 48 H 1.09001 * 109.50829 * 296.91394 * 26 25 24 49 49 H 1.09001 * 109.54031 * 176.80326 * 26 25 24 50 50 H 1.08992 * 109.50885 * 298.73444 * 28 27 26 51 51 H 1.09007 * 109.53794 * 178.62808 * 28 27 26 52 52 H 1.08998 * 109.50674 * 302.32540 * 29 24 23 53 53 H 1.09000 * 109.50457 * 62.41203 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7742 -1.2298 5 6 3.4699 -1.2032 -0.7180 6 1 4.1974 -0.4049 -0.8647 7 6 3.9332 -2.4913 -1.4015 8 6 3.2113 -1.4413 0.7853 9 1 3.0624 -2.5050 0.9709 10 6 4.3813 -0.9388 1.5912 11 8 4.5917 0.2525 1.6769 12 7 5.1939 -1.8133 2.2169 13 6 5.0073 -3.2535 2.0240 14 6 5.7460 -3.6945 0.7867 15 1 6.3661 -2.9926 0.2490 16 6 5.6299 -4.9941 0.3409 17 7 6.2750 -5.3791 -0.7386 18 14 4.5575 -6.2083 1.2710 19 1 3.1749 -6.1623 0.7311 20 1 5.1067 -7.5785 1.1095 21 1 4.5386 -5.8494 2.7118 22 6 6.2637 -1.3237 3.0897 23 6 5.7339 -1.1870 4.5185 24 7 6.8064 -0.6955 5.3936 25 6 7.8810 -1.6908 5.5199 26 6 9.0023 -1.1158 6.3893 27 8 8.4660 -0.7339 7.6590 28 6 7.4175 0.2349 7.5732 29 6 6.2802 -0.3265 6.7158 30 8 2.0286 -0.7158 1.1412 31 1 -0.3634 0.5038 0.8957 32 1 -0.3633 0.5238 -0.8842 33 1 -0.3634 -1.0276 -0.0115 34 1 2.1496 -0.1222 -2.0995 35 1 1.4470 -1.6429 -1.4493 36 1 3.2237 -3.2909 -1.1888 37 1 3.9886 -2.3315 -2.4783 38 1 4.9174 -2.7691 -1.0242 39 1 5.3964 -3.7895 2.8898 40 1 3.9452 -3.4703 1.9097 41 1 6.1936 -6.2934 -1.0520 42 1 7.0949 -2.0288 3.0763 43 1 6.6061 -0.3517 2.7346 44 1 4.9027 -0.4819 4.5318 45 1 5.3915 -2.1590 4.8736 46 1 7.4872 -2.5947 5.9847 47 1 8.2733 -1.9303 4.5316 48 1 9.4322 -0.2427 5.8984 49 1 9.7757 -1.8703 6.5330 50 1 7.8013 1.1472 7.1168 51 1 7.0441 0.4574 8.5729 52 1 5.5039 0.4300 6.6004 53 1 5.8601 -1.2084 7.1994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330372284.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:01 Heat of formation + Delta-G solvation = -134.870529 kcal Electronic energy + Delta-G solvation = -32076.129226 eV Core-core repulsion = 27947.318543 eV Total energy + Delta-G solvation = -4128.810684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.70395 -40.60231 -39.64419 -37.44420 -36.50152 -34.73564 -34.35856 -33.16843 -32.23442 -31.44333 -29.61609 -28.27202 -27.68281 -26.49916 -25.05137 -24.53650 -23.41562 -22.29716 -21.60861 -21.35352 -20.02493 -19.07662 -18.73061 -17.86073 -17.40898 -17.32387 -17.09594 -16.33763 -16.27009 -16.06425 -15.99247 -15.79393 -15.47054 -15.22849 -15.02722 -14.70206 -14.58992 -14.20299 -14.18698 -14.07694 -13.58047 -13.47291 -13.32457 -13.20614 -13.07817 -12.96259 -12.83980 -12.54440 -12.47967 -12.35094 -12.33676 -12.28209 -12.10830 -11.89516 -11.74149 -11.66653 -11.50067 -11.31590 -11.22100 -10.73704 -10.68769 -10.18119 -9.62041 -9.42784 -8.24477 -6.27662 1.37587 1.42858 1.47301 1.48039 1.97690 2.35225 2.71880 2.92004 3.02080 3.08803 3.40709 3.54487 3.76281 3.78923 3.88303 3.95266 4.02976 4.04434 4.11992 4.17114 4.25881 4.29188 4.33972 4.40044 4.42214 4.50328 4.56043 4.61286 4.66056 4.69308 4.73142 4.76374 4.78519 4.82933 4.87609 4.89081 4.93843 4.96627 4.99450 5.08227 5.11018 5.28868 5.32049 5.44315 5.58241 5.77322 5.83630 5.88783 5.95422 6.14265 6.19977 6.51030 6.72710 7.17369 7.34591 8.89700 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009299 B = 0.004005 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.425311 B = 6990.156837 C = 9124.896269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.064 3.936 3 H 0.063 0.937 4 C -0.135 4.135 5 C -0.098 4.098 6 H 0.066 0.934 7 C -0.142 4.142 8 C 0.072 3.928 9 H 0.103 0.897 10 C 0.510 3.490 11 O -0.583 6.583 12 N -0.590 5.590 13 C 0.213 3.787 14 C -0.524 4.524 15 H 0.043 0.957 16 C 0.043 3.957 17 N -0.925 5.925 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.249 1.249 22 C 0.126 3.874 23 C 0.060 3.940 24 N -0.541 5.541 25 C 0.011 3.989 26 C 0.067 3.933 27 O -0.402 6.402 28 C 0.066 3.934 29 C 0.017 3.983 30 O -0.380 6.380 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.267 0.733 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.036 0.964 46 H 0.039 0.961 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.116 0.884 50 H 0.062 0.938 51 H 0.120 0.880 52 H 0.091 0.909 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 7.302 8.278 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.008 3.992 3 H 0.081 0.919 4 C -0.172 4.172 5 C -0.118 4.118 6 H 0.084 0.916 7 C -0.199 4.199 8 C 0.011 3.989 9 H 0.120 0.880 10 C 0.299 3.701 11 O -0.464 6.464 12 N -0.321 5.321 13 C 0.091 3.909 14 C -0.562 4.562 15 H 0.061 0.939 16 C -0.158 4.158 17 N -0.564 5.564 18 Si 0.738 3.262 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.173 1.173 22 C 0.003 3.997 23 C -0.069 4.069 24 N -0.267 5.267 25 C -0.117 4.117 26 C -0.010 4.010 27 O -0.321 6.321 28 C -0.011 4.011 29 C -0.111 4.111 30 O -0.300 6.300 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.107 0.893 48 H 0.081 0.919 49 H 0.134 0.866 50 H 0.080 0.920 51 H 0.138 0.862 52 H 0.110 0.890 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.137 8.102 8.384 12.741 hybrid contribution -0.360 -1.506 -0.061 1.550 sum -5.498 6.596 8.323 11.959 Atomic orbital electron populations 1.21857 0.91159 1.03289 1.03460 1.23249 0.96457 0.95183 0.84349 0.91864 1.23421 0.93892 1.01363 0.98515 1.22452 0.98745 0.99367 0.91201 0.91582 1.21893 1.03847 0.94495 0.99710 1.22828 0.83939 0.96933 0.95187 0.87983 1.21156 0.84234 0.85744 0.78976 1.90565 1.74394 1.17337 1.64150 1.47927 1.31531 1.07863 1.44761 1.19770 0.97164 0.76766 0.97160 1.21195 1.29057 0.96338 1.09633 0.93864 1.25376 0.96208 0.99188 0.95049 1.69996 1.43414 1.18748 1.24213 0.86224 0.80127 0.79005 0.80876 1.18701 1.21247 1.17270 1.21245 0.89552 1.00310 0.88623 1.22228 0.93652 0.98483 0.92529 1.62123 1.10891 1.41385 1.12303 1.22935 0.93611 0.93453 1.01710 1.22748 0.94582 1.00442 0.83207 1.87944 1.53116 1.61381 1.29643 1.22776 0.86380 0.90947 1.00958 1.22857 0.98765 1.00800 0.88646 1.88392 1.39732 1.65261 1.36584 0.92098 0.88577 0.91697 0.87611 0.88834 0.93121 0.92152 0.90626 0.93945 0.94234 0.92339 0.90082 0.91306 0.91708 0.94548 0.94261 0.89263 0.91906 0.86576 0.91983 0.86205 0.89046 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.62 71.98 0.69 -2.24 16 2 C 0.06 1.83 4.08 31.26 0.13 1.96 16 3 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.13 -3.57 6.04 32.05 0.19 -3.38 16 5 C -0.10 -3.47 3.10 -9.53 -0.03 -3.50 16 6 H 0.07 2.53 7.80 -2.39 -0.02 2.51 16 7 C -0.14 -5.37 8.92 71.98 0.64 -4.73 16 8 C 0.07 2.78 3.19 30.31 0.10 2.87 16 9 H 0.10 4.04 5.06 -2.39 -0.01 4.03 16 10 C 0.51 22.01 6.57 87.65 0.58 22.59 16 11 O -0.58 -27.72 16.51 8.60 0.14 -27.58 16 12 N -0.59 -24.25 2.47 -826.17 -2.04 -26.29 16 13 C 0.21 8.98 3.98 85.63 0.34 9.32 16 14 C -0.52 -25.69 7.32 25.60 0.19 -25.50 16 15 H 0.04 2.45 7.44 -2.91 -0.02 2.43 16 16 C 0.04 2.13 5.38 84.65 0.46 2.59 16 17 N -0.92 -50.52 13.96 21.45 0.30 -50.22 16 18 Si 0.91 38.07 27.37 68.60 1.88 39.94 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.25 -9.65 6.69 99.48 0.67 -8.98 16 22 C 0.13 4.62 5.36 86.38 0.46 5.09 16 23 C 0.06 1.91 5.28 86.30 0.46 2.36 16 24 N -0.54 -14.85 4.73 -895.23 -4.23 -19.08 16 25 C 0.01 0.27 5.44 86.31 0.47 0.74 16 26 C 0.07 1.42 7.01 72.01 0.50 1.93 16 27 O -0.40 -9.39 10.83 -148.98 -1.61 -11.00 16 28 C 0.07 1.30 7.01 72.01 0.50 1.80 16 29 C 0.02 0.39 5.64 86.31 0.49 0.88 16 30 O -0.38 -13.98 10.62 -137.33 -1.46 -15.44 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.09 2.26 7.96 -2.39 -0.02 2.24 16 36 H 0.05 1.87 8.06 -2.39 -0.02 1.85 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.08 3.49 4.63 -2.39 -0.01 3.48 16 39 H 0.04 1.73 7.45 -2.38 -0.02 1.71 16 40 H 0.04 1.63 4.98 -2.38 -0.01 1.62 16 41 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 42 H 0.08 2.90 6.45 -2.39 -0.02 2.88 16 43 H 0.07 2.74 7.36 -2.39 -0.02 2.72 16 44 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 45 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 46 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 2.28 6.38 -2.39 -0.02 2.26 16 48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 52 H 0.09 1.96 8.09 -2.39 -0.02 1.94 16 53 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -62.81 405.14 -0.02 -62.82 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.84 Total: 34.07 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 6.17 Total: 12.78 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -5.97 Total: -95.59 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -2.93 Total: -54.03 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.88 Total: 39.94 kcal Total: -62.81 -0.02 -62.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330372284.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.049 kcal (2) G-P(sol) polarization free energy of solvation -62.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds