Wall clock time and date at job start Wed Apr 1 2020 00:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53134 * 1 3 3 H 1.08804 * 110.01387 * 2 1 4 4 O 1.43680 * 109.27433 * 121.24671 * 2 1 3 5 5 C 1.43727 * 110.27533 * 110.58293 * 4 2 1 6 6 C 1.54960 * 105.90225 * 344.16441 * 5 4 2 7 7 C 1.53624 * 110.22533 * 238.25331 * 2 1 3 8 8 C 1.52566 * 110.66657 * 155.09021 * 7 2 1 9 9 N 1.47152 * 109.23270 * 278.18799 * 8 7 2 10 10 C 1.34638 * 121.51567 * 129.77873 * 9 8 7 11 11 O 1.21586 * 120.00025 * 354.82006 * 10 9 8 12 12 N 1.34775 * 120.00280 * 174.82579 * 10 9 8 13 13 C 1.46499 * 120.00594 * 184.99346 * 12 10 9 14 14 C 1.52992 * 109.47336 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47226 * 299.99717 * 14 13 12 16 16 C 1.52997 * 109.47154 * 59.99951 * 14 13 12 17 17 C 1.50702 * 109.47131 * 180.02562 * 14 13 12 18 18 H 1.08000 * 119.99848 * 359.97438 * 17 14 13 19 19 C 1.37881 * 120.00201 * 180.02562 * 17 14 13 20 20 N 1.31512 * 119.99721 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99954 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.46955 * 89.99467 * 21 19 17 23 23 H 1.48498 * 109.46641 * 209.99450 * 21 19 17 24 24 H 1.48495 * 109.46763 * 329.99463 * 21 19 17 25 25 C 1.47297 * 117.21592 * 309.56180 * 9 8 7 26 26 C 1.53328 * 107.69384 * 54.95970 * 25 9 8 27 27 H 1.09109 * 109.05591 * 67.62906 * 26 25 9 28 28 C 1.53219 * 109.20343 * 186.60339 * 26 25 9 29 29 O 1.41116 * 112.28462 * 28.17225 * 7 2 1 30 30 H 1.09003 * 109.47089 * 300.20482 * 1 2 3 31 31 H 1.09000 * 109.47214 * 60.21024 * 1 2 3 32 32 H 1.09004 * 109.47269 * 180.20991 * 1 2 3 33 33 H 1.09381 * 110.56710 * 103.56821 * 5 4 2 34 34 H 1.09408 * 110.53930 * 224.81282 * 5 4 2 35 35 H 1.08706 * 111.45539 * 275.37176 * 6 5 4 36 36 H 1.08829 * 111.27263 * 150.31805 * 6 5 4 37 37 H 1.09154 * 109.58989 * 38.18468 * 8 7 2 38 38 H 1.09121 * 109.60800 * 158.10429 * 8 7 2 39 39 H 0.97005 * 119.99572 * 4.99342 * 12 10 9 40 40 H 1.08999 * 109.47041 * 300.00136 * 13 12 10 41 41 H 1.09004 * 109.46627 * 59.99692 * 13 12 10 42 42 H 1.09003 * 109.46769 * 60.00265 * 15 14 13 43 43 H 1.08995 * 109.47277 * 179.97438 * 15 14 13 44 44 H 1.08998 * 109.47033 * 300.00345 * 15 14 13 45 45 H 1.08995 * 109.47206 * 60.00265 * 16 14 13 46 46 H 1.09008 * 109.47182 * 179.97438 * 16 14 13 47 47 H 1.08994 * 109.47322 * 299.99413 * 16 14 13 48 48 H 0.97005 * 119.99859 * 180.02562 * 20 19 17 49 49 H 1.08857 * 109.72672 * 174.42228 * 25 9 8 50 50 H 1.08846 * 109.74386 * 295.48063 * 25 9 8 51 51 H 1.09000 * 109.46568 * 60.00333 * 28 26 25 52 52 H 1.08999 * 109.47077 * 179.97438 * 28 26 25 53 53 H 1.09002 * 109.47175 * 300.00335 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5313 0.0000 0.0000 3 1 1.9037 1.0223 0.0000 4 8 2.0056 -0.7035 1.1595 5 6 2.6174 -1.9453 0.7730 6 6 2.1597 -2.2088 -0.6838 7 6 2.0624 -0.7585 -1.2258 8 6 3.4634 -0.2775 -1.5912 9 7 3.3605 0.9585 -2.3830 10 6 4.0729 2.0570 -2.0689 11 8 4.7501 2.0742 -1.0592 12 7 4.0353 3.1375 -2.8735 13 6 4.8934 4.2910 -2.5917 14 6 4.6583 5.3719 -3.6487 15 6 4.9935 4.8130 -5.0330 16 6 3.1919 5.8070 -3.6157 17 6 5.5415 6.5581 -3.3591 18 1 6.2039 6.5428 -2.5062 19 6 5.5031 7.6635 -4.1824 20 7 4.6961 7.6824 -5.2206 21 14 6.5973 9.1342 -3.8230 22 1 7.8966 8.9670 -4.5222 23 1 5.9336 10.3735 -4.3012 24 1 6.8315 9.2311 -2.3598 25 6 2.4478 0.9440 -3.5391 26 6 1.0640 0.5174 -3.0350 27 1 0.6629 1.3005 -2.3897 28 6 0.1269 0.3305 -4.2327 29 8 1.1673 -0.7078 -2.3156 30 1 -0.3633 0.5170 0.8882 31 1 -0.3634 0.5106 -0.8919 32 1 -0.3634 -1.0277 0.0038 33 1 3.7075 -1.8672 0.8188 34 1 2.2842 -2.7572 1.4264 35 1 1.1896 -2.6982 -0.7135 36 1 2.9075 -2.7743 -1.2365 37 1 4.0321 -0.0811 -0.6804 38 1 3.9733 -1.0451 -2.1758 39 1 3.4401 3.1514 -3.6393 40 1 4.6549 4.6888 -1.6053 41 1 5.9381 3.9810 -2.6156 42 1 4.3550 3.9548 -5.2427 43 1 4.8256 5.5829 -5.7860 44 1 6.0382 4.5030 -5.0564 45 1 2.9531 6.2051 -2.6296 46 1 3.0245 6.5774 -4.3685 47 1 2.5534 4.9489 -3.8255 48 1 4.6694 8.4599 -5.8001 49 1 2.3904 1.9400 -3.9745 50 1 2.8054 0.2322 -4.2809 51 1 0.5291 -0.4386 -4.8920 52 1 -0.8584 0.0267 -3.8792 53 1 0.0436 1.2701 -4.7789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331504949.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:32 Heat of formation + Delta-G solvation = -128.289667 kcal Electronic energy + Delta-G solvation = -32517.593939 eV Core-core repulsion = 28389.068623 eV Total energy + Delta-G solvation = -4128.525316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.28758 -40.81907 -39.02801 -38.20635 -36.00672 -35.10540 -34.34415 -32.70319 -32.30182 -31.58205 -28.99508 -27.58525 -27.57100 -27.36840 -26.56748 -25.14275 -23.47172 -22.64341 -21.68877 -20.72628 -20.62527 -19.41670 -18.14528 -17.85416 -17.79592 -17.18282 -16.68775 -16.64046 -16.53165 -16.29239 -15.74859 -15.32873 -15.21933 -15.03190 -14.75004 -14.58443 -14.42642 -14.09543 -13.99976 -13.78035 -13.39521 -13.28974 -13.22729 -13.14870 -13.06591 -12.99729 -12.71159 -12.65372 -12.60147 -12.28145 -12.27183 -12.24467 -12.13881 -11.98280 -11.71066 -11.50895 -11.35283 -11.11667 -10.92602 -10.72889 -10.60046 -10.41180 -10.14015 -9.48376 -8.03513 -6.18878 1.42120 1.43238 1.46571 1.54203 2.03727 2.25404 2.44910 2.87177 2.91253 3.19777 3.20347 3.41549 3.59351 3.79623 3.93595 3.98064 4.10762 4.16413 4.24271 4.33233 4.35028 4.41639 4.43587 4.49521 4.52764 4.63484 4.68028 4.70030 4.77949 4.86038 4.89336 4.95164 4.99431 5.01492 5.02502 5.05318 5.06953 5.17252 5.20906 5.26829 5.34164 5.35628 5.56127 5.65517 5.66439 5.80421 5.94828 6.13496 6.19674 6.24451 6.42416 6.84606 6.89754 7.47572 7.48867 8.95602 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.002826 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.950394 B = 9904.132457 C =10523.982727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 H 0.050 0.950 4 O -0.398 6.398 5 C 0.040 3.960 6 C -0.127 4.127 7 C 0.091 3.909 8 C 0.108 3.892 9 N -0.632 5.632 10 C 0.701 3.299 11 O -0.635 6.635 12 N -0.724 5.724 13 C 0.167 3.833 14 C 0.053 3.947 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.530 4.530 18 H 0.043 0.957 19 C 0.031 3.969 20 N -0.898 5.898 21 Si 0.944 3.056 22 H -0.278 1.278 23 H -0.282 1.282 24 H -0.277 1.277 25 C 0.075 3.925 26 C 0.074 3.926 27 H 0.054 0.946 28 C -0.137 4.137 29 O -0.349 6.349 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.403 0.597 40 H 0.033 0.967 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.018 0.982 45 H 0.016 0.984 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.261 0.739 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.076 0.924 52 H 0.073 0.927 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.408 -21.697 1.285 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.001 4.001 3 H 0.069 0.931 4 O -0.318 6.318 5 C -0.036 4.036 6 C -0.165 4.165 7 C 0.049 3.951 8 C -0.015 4.015 9 N -0.370 5.370 10 C 0.403 3.597 11 O -0.517 6.517 12 N -0.381 5.381 13 C 0.042 3.958 14 C 0.053 3.947 15 C -0.176 4.176 16 C -0.176 4.176 17 C -0.569 4.569 18 H 0.061 0.939 19 C -0.169 4.169 20 N -0.536 5.536 21 Si 0.771 3.229 22 H -0.204 1.204 23 H -0.207 1.207 24 H -0.202 1.202 25 C -0.048 4.048 26 C 0.016 3.984 27 H 0.071 0.929 28 C -0.195 4.195 29 O -0.268 6.268 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.243 0.757 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.071 0.929 49 H 0.113 0.887 50 H 0.118 0.882 51 H 0.095 0.905 52 H 0.092 0.908 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.067 -21.603 1.994 24.354 hybrid contribution 0.892 1.599 -0.009 1.831 sum -10.175 -20.004 1.985 22.531 Atomic orbital electron populations 1.21999 0.93082 1.03312 1.02074 1.23063 0.96053 0.95267 0.85684 0.93147 1.88512 1.78185 1.34533 1.30549 1.23681 0.98104 0.86343 0.95445 1.23231 1.05162 0.93160 0.94956 1.22557 0.88533 0.97446 0.86572 1.22128 0.96827 0.85381 0.97191 1.47261 1.46119 1.11497 1.32122 1.16004 0.80243 0.80703 0.82781 1.90862 1.48648 1.83452 1.28724 1.45345 1.45830 1.15867 1.31049 1.21168 0.91692 0.84479 0.98428 1.18349 0.94094 0.91019 0.91283 1.21649 0.97605 0.98676 0.99649 1.21650 0.96055 0.99998 0.99903 1.21258 1.23086 1.01071 1.11490 0.93850 1.25418 0.96468 1.00142 0.94903 1.69892 1.37846 1.30200 1.15687 0.85770 0.79269 0.79669 0.78174 1.20429 1.20718 1.20245 1.22713 0.89763 1.04147 0.88166 1.22587 0.94566 0.86582 0.94636 0.92854 1.21802 0.98610 1.04100 0.94957 1.87224 1.61390 1.34801 1.43347 0.92595 0.91014 0.90894 0.91430 0.87526 0.87776 0.86792 0.90116 0.88622 0.75729 0.94877 0.94562 0.94608 0.91676 0.96325 0.96525 0.91619 0.94682 0.92946 0.88747 0.88159 0.90538 0.90802 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.93 72.03 0.64 -2.36 16 2 C 0.06 1.41 3.29 30.85 0.10 1.51 16 3 H 0.05 1.60 7.95 -2.49 -0.02 1.58 16 4 O -0.40 -10.21 11.01 -148.98 -1.64 -11.84 16 5 C 0.04 0.67 7.31 72.65 0.53 1.21 16 6 C -0.13 -1.77 6.16 32.00 0.20 -1.57 16 7 C 0.09 1.80 0.78 -10.00 -0.01 1.80 16 8 C 0.11 2.58 5.04 86.11 0.43 3.01 16 9 N -0.63 -17.17 2.99 -836.56 -2.50 -19.68 16 10 C 0.70 25.74 8.32 179.10 1.49 27.23 16 11 O -0.64 -28.90 15.86 -3.99 -0.06 -28.96 16 12 N -0.72 -26.09 4.88 -478.67 -2.33 -28.42 16 13 C 0.17 7.31 4.51 86.38 0.39 7.70 16 14 C 0.05 2.46 0.50 -52.93 -0.03 2.44 16 15 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 16 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 17 C -0.53 -28.18 8.01 25.60 0.21 -27.98 16 18 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 19 C 0.03 1.61 5.15 84.66 0.44 2.04 16 20 N -0.90 -47.30 9.35 21.45 0.20 -47.09 16 21 Si 0.94 42.58 29.54 68.60 2.03 44.60 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 C 0.07 1.45 5.89 86.34 0.51 1.96 16 26 C 0.07 1.27 2.86 30.78 0.09 1.36 16 27 H 0.05 1.06 6.88 -2.33 -0.02 1.04 16 28 C -0.14 -1.55 9.57 72.06 0.69 -0.86 16 29 O -0.35 -6.34 8.59 -147.83 -1.27 -7.61 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.37 5.99 -2.39 -0.01 1.36 16 32 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 33 H 0.07 1.13 8.05 -2.18 -0.02 1.11 16 34 H 0.11 1.30 8.18 -2.17 -0.02 1.28 16 35 H 0.10 1.25 8.08 -2.54 -0.02 1.23 16 36 H 0.11 1.11 7.78 -2.48 -0.02 1.09 16 37 H 0.08 2.38 6.58 -2.31 -0.02 2.37 16 38 H 0.10 1.84 7.85 -2.32 -0.02 1.82 16 39 H 0.40 12.49 3.71 -92.70 -0.34 12.14 16 40 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.04 1.29 6.86 -2.39 -0.02 1.28 16 43 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 47 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 48 H 0.26 13.23 8.31 -92.70 -0.77 12.45 16 49 H 0.09 1.79 5.71 -2.46 -0.01 1.77 16 50 H 0.10 1.59 8.13 -2.47 -0.02 1.57 16 51 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -66.27 395.99 1.81 -64.46 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.55 Total: 26.28 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.84 Total: 8.26 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -4.64 Total: -95.19 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -2.97 Total: -48.41 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -66.27 1.81 -64.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331504949.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.829 kcal (2) G-P(sol) polarization free energy of solvation -66.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds