Wall clock time and date at job start Wed Apr 1 2020 00:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.43646 * 2 1 4 4 O 1.44550 * 110.39218 * 122.35577 * 2 1 3 5 5 C 1.44475 * 105.37159 * 158.78047 * 4 2 1 6 6 C 1.54610 * 104.81866 * 319.84848 * 5 4 2 7 7 C 1.53921 * 110.39273 * 237.63977 * 2 1 3 8 8 C 1.52645 * 110.21159 * 335.99462 * 7 2 1 9 9 N 1.47277 * 108.38458 * 173.34706 * 8 7 2 10 10 C 1.34775 * 121.05270 * 130.41014 * 9 8 7 11 11 O 1.21588 * 120.00371 * 185.13541 * 10 9 8 12 12 N 1.34781 * 119.99938 * 5.14125 * 10 9 8 13 13 C 1.46501 * 119.99673 * 185.04363 * 12 10 9 14 14 C 1.53007 * 109.46750 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47158 * 59.99707 * 14 13 12 16 16 C 1.53001 * 109.47009 * 299.99649 * 14 13 12 17 17 C 1.50697 * 109.47190 * 179.97438 * 14 13 12 18 18 H 1.08002 * 120.00165 * 358.83902 * 17 14 13 19 19 C 1.37880 * 120.00182 * 178.84478 * 17 14 13 20 20 N 1.31512 * 119.99940 * 2.68063 * 19 17 14 21 21 Si 1.86803 * 119.99918 * 182.68859 * 19 17 14 22 22 H 1.48505 * 109.46941 * 265.00052 * 21 19 17 23 23 H 1.48500 * 109.47268 * 24.99677 * 21 19 17 24 24 H 1.48500 * 109.46908 * 145.00308 * 21 19 17 25 25 C 1.47157 * 117.89765 * 310.68830 * 9 8 7 26 26 C 1.52866 * 108.75759 * 50.73650 * 25 9 8 27 27 H 1.08998 * 109.41009 * 67.32244 * 26 25 9 28 28 C 1.53005 * 109.58408 * 187.40339 * 26 25 9 29 29 O 1.42218 * 110.47692 * 98.82165 * 7 2 1 30 30 H 1.09006 * 109.47113 * 182.35996 * 1 2 3 31 31 H 1.09006 * 109.47338 * 302.36025 * 1 2 3 32 32 H 1.08995 * 109.47556 * 62.36009 * 1 2 3 33 33 H 1.09000 * 110.36964 * 201.01141 * 5 4 2 34 34 H 1.08997 * 110.46161 * 78.72969 * 5 4 2 35 35 H 1.09001 * 110.54518 * 265.30175 * 6 5 4 36 36 H 1.08998 * 110.54965 * 142.50147 * 6 5 4 37 37 H 1.09000 * 109.68084 * 53.61947 * 8 7 2 38 38 H 1.09000 * 109.67999 * 293.06867 * 8 7 2 39 39 H 0.96995 * 120.00132 * 5.03459 * 12 10 9 40 40 H 1.08990 * 109.47804 * 59.99870 * 13 12 10 41 41 H 1.09006 * 109.47323 * 299.99121 * 13 12 10 42 42 H 1.09000 * 109.46909 * 176.32074 * 15 14 13 43 43 H 1.09004 * 109.47143 * 296.31733 * 15 14 13 44 44 H 1.08994 * 109.47580 * 56.31773 * 15 14 13 45 45 H 1.09004 * 109.47110 * 300.00340 * 16 14 13 46 46 H 1.09004 * 109.47074 * 59.99784 * 16 14 13 47 47 H 1.08999 * 109.47152 * 180.02562 * 16 14 13 48 48 H 0.96999 * 120.00136 * 180.02562 * 20 19 17 49 49 H 1.09001 * 109.62889 * 170.50305 * 25 9 8 50 50 H 1.09000 * 109.63006 * 291.08255 * 25 9 8 51 51 H 1.09002 * 109.46992 * 179.87699 * 28 26 25 52 52 H 1.09002 * 109.46889 * 299.87845 * 28 26 25 53 53 H 1.09006 * 109.46919 * 59.87865 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 8 2.0336 -0.7251 1.1446 5 6 3.3843 -1.1010 0.7957 6 6 3.3078 -1.5152 -0.6919 7 6 2.0663 -0.7722 -1.2187 8 6 1.0235 -1.7731 -1.7095 9 7 1.5091 -2.3721 -2.9643 10 6 1.5138 -3.7082 -3.1406 11 8 2.0044 -4.1872 -4.1447 12 7 0.9747 -4.5135 -2.2039 13 6 1.0776 -5.9684 -2.3416 14 6 0.3892 -6.6430 -1.1532 15 6 -1.0855 -6.2368 -1.1203 16 6 1.0682 -6.2044 0.1458 17 6 0.4944 -8.1396 -1.2951 18 1 0.9851 -8.5672 -2.1569 19 6 -0.0359 -8.9631 -0.3246 20 7 -0.6796 -8.4442 0.6981 21 14 0.1602 -10.8156 -0.4625 22 1 -1.0446 -11.3941 -1.1099 23 1 1.3596 -11.1269 -1.2809 24 1 0.3214 -11.3986 0.8938 25 6 1.9947 -1.4658 -4.0171 26 6 3.0095 -0.5003 -3.4050 27 1 3.9009 -1.0524 -3.1074 28 6 3.3888 0.5658 -4.4348 29 8 2.4312 0.1284 -2.2571 30 1 -0.3634 -1.0269 0.0423 31 1 -0.3634 0.5501 0.8681 32 1 -0.3634 0.4767 -0.9103 33 1 3.7143 -1.9410 1.4070 34 1 4.0595 -0.2543 0.9195 35 1 3.1755 -2.5934 -0.7824 36 1 4.2018 -1.1925 -1.2254 37 1 0.0785 -1.2604 -1.8889 38 1 0.8824 -2.5529 -0.9610 39 1 0.5187 -4.1298 -1.4386 40 1 2.1281 -6.2579 -2.3646 41 1 0.5941 -6.2809 -3.2672 42 1 -1.5907 -6.7678 -0.3135 43 1 -1.1628 -5.1625 -0.9524 44 1 -1.5537 -6.4904 -2.0713 45 1 2.1189 -6.4937 0.1222 46 1 0.9918 -5.1218 0.2481 47 1 0.5781 -6.6853 0.9923 48 1 -1.0524 -9.0235 1.3810 49 1 2.4726 -2.0451 -4.8071 50 1 1.1582 -0.9009 -4.4285 51 1 4.1108 1.2545 -3.9958 52 1 3.8293 0.0862 -5.3089 53 1 2.4966 1.1164 -4.7333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331504951.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:39 Heat of formation + Delta-G solvation = -126.693587 kcal Electronic energy + Delta-G solvation = -32828.422677 eV Core-core repulsion = 28699.966572 eV Total energy + Delta-G solvation = -4128.456105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.30636 -40.75299 -39.05230 -38.14040 -35.98855 -35.08728 -34.40135 -32.78931 -32.54424 -31.54440 -28.30193 -27.93173 -27.59273 -27.30601 -26.11817 -25.71869 -23.89816 -22.11470 -21.71275 -20.69665 -20.30230 -19.56426 -18.25727 -17.84642 -17.35435 -17.21772 -16.77506 -16.65156 -16.50237 -16.39960 -15.84311 -15.49790 -15.32175 -15.07710 -14.75202 -14.55017 -14.46968 -14.11144 -13.88850 -13.58060 -13.45930 -13.24265 -13.20435 -13.14753 -13.06945 -12.98259 -12.70431 -12.59331 -12.53518 -12.34786 -12.28544 -12.13770 -12.10225 -11.89374 -11.68690 -11.51177 -11.37914 -11.18101 -11.05627 -10.78967 -10.73770 -10.39733 -10.12161 -9.45632 -8.02542 -6.18453 1.42348 1.44980 1.49472 1.55388 2.05091 2.34698 2.45250 2.77465 2.95247 3.20982 3.31665 3.45685 3.64907 3.75608 3.94431 3.98905 4.08035 4.12133 4.21761 4.32444 4.36598 4.42589 4.46882 4.49664 4.52213 4.60854 4.67790 4.71102 4.78956 4.82059 4.87675 4.90258 4.95460 4.99120 5.01503 5.02321 5.06888 5.16928 5.23103 5.26844 5.34626 5.35518 5.56594 5.64560 5.66546 5.68286 5.81906 6.12472 6.13066 6.19903 6.42760 6.85290 6.89203 7.48188 7.49434 8.96428 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.003301 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.417984 B = 8480.912540 C = 9486.356637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.091 3.909 3 H 0.093 0.907 4 O -0.381 6.381 5 C 0.049 3.951 6 C -0.179 4.179 7 C 0.085 3.915 8 C 0.090 3.910 9 N -0.630 5.630 10 C 0.702 3.298 11 O -0.633 6.633 12 N -0.726 5.726 13 C 0.167 3.833 14 C 0.053 3.947 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.528 4.528 18 H 0.045 0.955 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.945 3.055 22 H -0.280 1.280 23 H -0.275 1.275 24 H -0.282 1.282 25 C 0.098 3.902 26 C 0.075 3.925 27 H 0.057 0.943 28 C -0.135 4.135 29 O -0.359 6.359 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.401 0.599 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.030 0.970 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.030 0.970 47 H 0.063 0.937 48 H 0.261 0.739 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.075 0.925 52 H 0.086 0.914 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 22.680 -2.308 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.111 0.889 4 O -0.301 6.301 5 C -0.028 4.028 6 C -0.217 4.217 7 C 0.043 3.957 8 C -0.032 4.032 9 N -0.368 5.368 10 C 0.403 3.597 11 O -0.515 6.515 12 N -0.382 5.382 13 C 0.043 3.957 14 C 0.052 3.948 15 C -0.177 4.177 16 C -0.173 4.173 17 C -0.567 4.567 18 H 0.063 0.937 19 C -0.170 4.170 20 N -0.537 5.537 21 Si 0.772 3.228 22 H -0.206 1.206 23 H -0.200 1.200 24 H -0.208 1.208 25 C -0.025 4.025 26 C 0.017 3.983 27 H 0.075 0.925 28 C -0.193 4.193 29 O -0.278 6.278 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.240 0.760 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.037 0.963 45 H 0.038 0.962 46 H 0.049 0.951 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.107 0.893 50 H 0.105 0.895 51 H 0.094 0.906 52 H 0.105 0.895 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.430 22.387 -2.643 23.187 hybrid contribution 0.108 -1.679 0.094 1.685 sum 5.538 20.708 -2.549 21.587 Atomic orbital electron populations 1.21982 0.91355 1.03503 1.04141 1.22817 0.96472 0.95688 0.81756 0.88897 1.89226 1.28413 1.74687 1.37727 1.23460 0.84506 1.00967 0.93824 1.23463 0.99262 1.00887 0.98083 1.22647 0.93602 0.90195 0.89230 1.22535 0.98276 0.96856 0.85582 1.47338 1.68077 1.03276 1.18078 1.16036 0.79120 0.81448 0.83049 1.90843 1.54374 1.75113 1.31171 1.45384 1.59929 1.06886 1.26044 1.21176 0.98773 0.76854 0.98935 1.18355 0.92428 0.93588 0.90432 1.21666 0.98323 0.97383 1.00338 1.21618 0.98062 0.96989 1.00677 1.21246 1.37234 0.91594 1.06597 0.93663 1.25443 0.94620 1.01902 0.95079 1.69902 1.36488 1.35555 1.11738 0.85742 0.78224 0.81542 0.77280 1.20560 1.20032 1.20768 1.22246 0.98725 0.91260 0.90293 1.22561 0.94311 0.94727 0.86747 0.92459 1.21717 1.02989 0.97636 0.96933 1.87836 1.81096 1.32717 1.26180 0.91743 0.90393 0.89130 0.88374 0.90152 0.91881 0.89073 0.88169 0.89667 0.76033 0.94536 0.94520 0.91583 0.95090 0.96300 0.96229 0.95104 0.91857 0.92983 0.89285 0.89537 0.90644 0.89529 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.29 71.98 0.60 -1.74 16 2 C 0.09 1.65 3.59 30.90 0.11 1.76 16 3 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 4 O -0.38 -8.47 11.35 -148.98 -1.69 -10.16 16 5 C 0.05 0.93 7.65 72.53 0.55 1.48 16 6 C -0.18 -3.77 5.78 31.47 0.18 -3.59 16 7 C 0.08 1.69 0.96 -10.27 -0.01 1.68 16 8 C 0.09 2.02 3.78 86.11 0.33 2.35 16 9 N -0.63 -17.23 2.91 -837.09 -2.44 -19.67 16 10 C 0.70 25.53 8.31 179.05 1.49 27.02 16 11 O -0.63 -27.84 15.82 -3.99 -0.06 -27.90 16 12 N -0.73 -26.64 4.84 -478.52 -2.32 -28.95 16 13 C 0.17 7.33 4.51 86.38 0.39 7.72 16 14 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 15 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 16 C -0.12 -5.20 8.07 71.98 0.58 -4.62 16 17 C -0.53 -28.09 8.01 25.60 0.21 -27.89 16 18 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 19 C 0.03 1.55 5.14 84.66 0.44 1.99 16 20 N -0.90 -47.91 9.34 21.45 0.20 -47.71 16 21 Si 0.95 42.66 29.54 68.60 2.03 44.68 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.10 2.21 5.90 86.21 0.51 2.71 16 26 C 0.07 1.37 3.10 30.55 0.09 1.47 16 27 H 0.06 1.17 6.50 -2.39 -0.02 1.15 16 28 C -0.14 -1.67 9.57 71.98 0.69 -0.98 16 29 O -0.36 -6.91 9.84 -148.98 -1.47 -8.38 16 30 H 0.06 1.08 6.75 -2.38 -0.02 1.06 16 31 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.09 1.12 7.69 -2.39 -0.02 1.10 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.62 7.67 -2.39 -0.02 1.60 16 36 H 0.09 1.79 6.61 -2.39 -0.02 1.77 16 37 H 0.10 1.91 6.20 -2.39 -0.01 1.90 16 38 H 0.09 2.08 5.71 -2.39 -0.01 2.06 16 39 H 0.40 13.29 3.87 -92.71 -0.36 12.93 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.07 3.31 5.97 -2.39 -0.01 3.30 16 43 H 0.03 1.19 6.97 -2.38 -0.02 1.17 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 47 H 0.06 3.15 6.08 -2.39 -0.01 3.14 16 48 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 49 H 0.09 2.30 7.06 -2.39 -0.02 2.28 16 50 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -63.34 393.83 1.50 -61.83 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.54 Total: 29.24 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 6.71 Total: 7.00 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -4.55 Total: -96.33 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -3.22 Total: -46.43 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -63.34 1.50 -61.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331504951.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.859 kcal (2) G-P(sol) polarization free energy of solvation -63.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds