Wall clock time and date at job start Tue Mar 31 2020 23:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46779 * 2 1 4 4 C 1.53000 * 109.47015 * 119.99538 * 2 1 3 5 5 C 1.53002 * 109.47015 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47139 * 300.00353 * 5 4 2 7 7 C 1.53000 * 109.47456 * 59.99917 * 6 5 4 8 8 C 1.52995 * 109.47053 * 239.99518 * 2 1 3 9 9 H 1.08996 * 109.47282 * 300.00011 * 8 2 1 10 10 O 1.42900 * 109.47224 * 60.00061 * 8 2 1 11 11 C 1.42895 * 114.00557 * 209.99728 * 10 8 2 12 12 C 1.52991 * 109.47585 * 179.97438 * 11 10 8 13 13 N 1.46500 * 109.47288 * 65.00060 * 12 11 10 14 14 C 1.34773 * 120.00432 * 179.97438 * 13 12 11 15 15 O 1.21353 * 120.00047 * 0.02562 * 14 13 12 16 16 C 1.49454 * 120.00135 * 179.72278 * 14 13 12 17 17 O 1.21343 * 119.99752 * 0.28157 * 16 14 13 18 18 N 1.34777 * 120.00164 * 180.27489 * 16 14 13 19 19 C 1.46499 * 120.00065 * 180.02562 * 18 16 14 20 20 C 1.53003 * 109.46671 * 180.02562 * 19 18 16 21 21 C 1.53005 * 109.46661 * 180.02562 * 20 19 18 22 22 C 1.50696 * 109.46885 * 180.02562 * 21 20 19 23 23 H 1.08001 * 120.00286 * 359.97438 * 22 21 20 24 24 C 1.37885 * 120.00114 * 179.97438 * 22 21 20 25 25 N 1.31520 * 119.99465 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00149 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47229 * 60.00369 * 26 24 22 28 28 H 1.48498 * 109.47080 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47153 * 299.99916 * 26 24 22 30 30 H 1.09009 * 109.46799 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47351 * 300.00146 * 1 2 3 32 32 H 1.09000 * 109.47242 * 60.00299 * 1 2 3 33 33 H 1.08999 * 109.47318 * 300.00335 * 4 2 1 34 34 H 1.08996 * 109.47102 * 60.00122 * 4 2 1 35 35 H 1.09001 * 109.46779 * 60.00461 * 5 4 2 36 36 H 1.09001 * 109.47020 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.47151 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.46646 * 299.99699 * 6 5 4 39 39 H 1.08996 * 109.46950 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.46970 * 59.99580 * 7 6 5 41 41 H 1.09007 * 109.47004 * 59.99824 * 11 10 8 42 42 H 1.09001 * 109.47234 * 300.00463 * 11 10 8 43 43 H 1.09000 * 109.47648 * 304.99951 * 12 11 10 44 44 H 1.09001 * 109.47172 * 184.99895 * 12 11 10 45 45 H 0.97001 * 119.99454 * 0.02562 * 13 12 11 46 46 H 0.97000 * 119.99555 * 0.02562 * 18 16 14 47 47 H 1.08994 * 109.46952 * 300.00262 * 19 18 16 48 48 H 1.08992 * 109.46844 * 60.00609 * 19 18 16 49 49 H 1.08994 * 109.47336 * 299.99647 * 20 19 18 50 50 H 1.08992 * 109.47300 * 60.00508 * 20 19 18 51 51 H 1.09008 * 109.46807 * 299.99899 * 21 20 19 52 52 H 1.08998 * 109.47208 * 59.99706 * 21 20 19 53 53 H 0.96997 * 119.99506 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2490 6 6 4.0795 -1.4433 -0.0002 7 6 3.5695 -0.7222 -1.2495 8 6 2.0400 -0.7213 -1.2491 9 1 1.6767 -1.7490 -1.2491 10 8 1.5637 -0.0478 -2.4160 11 6 1.3699 -0.9043 -3.5433 12 6 0.8610 -0.0809 -4.7280 13 7 1.8938 0.8732 -5.1393 14 6 1.6664 1.7092 -6.1716 15 8 0.6058 1.6720 -6.7602 16 6 2.7177 2.6868 -6.5871 17 8 3.7780 2.7242 -5.9983 18 7 2.4882 3.5266 -7.6159 19 6 3.5189 4.4845 -8.0236 20 6 3.0077 5.3117 -9.2048 21 6 4.0845 6.3117 -9.6310 22 6 3.5808 7.1269 -10.7940 23 1 2.5918 6.9494 -11.1900 24 6 4.3826 8.0996 -11.3528 25 7 5.5872 8.3155 -10.8710 26 14 3.7586 9.1097 -12.7948 27 1 2.5324 9.8438 -12.3912 28 1 4.8036 10.0803 -13.2084 29 1 3.4438 8.2076 -13.9317 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6766 -0.2073 2.1392 34 1 1.6767 -1.7488 1.2494 35 1 3.9337 0.3059 1.2488 36 1 3.9333 -1.2351 2.1392 37 1 5.1695 -1.4433 -0.0007 38 1 3.7158 -2.4709 0.0001 39 1 3.9321 -1.2366 -2.1394 40 1 3.9332 0.3054 -1.2498 41 1 0.6380 -1.6728 -3.2942 42 1 2.3162 -1.3761 -3.8080 43 1 -0.0381 0.4610 -4.4345 44 1 0.6289 -0.7461 -5.5598 45 1 2.7417 0.9026 -4.6690 46 1 1.6404 3.4968 -8.0864 47 1 3.7497 5.1469 -7.1894 48 1 4.4189 3.9456 -8.3195 49 1 2.7767 4.6496 -10.0392 50 1 2.1078 5.8506 -8.9086 51 1 4.3160 6.9739 -8.7967 52 1 4.9843 5.7725 -9.9273 53 1 6.1511 9.0000 -11.2638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340336283.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:32 Heat of formation + Delta-G solvation = -182.621949 kcal Electronic energy + Delta-G solvation = -28982.040999 eV Core-core repulsion = 24851.159658 eV Total energy + Delta-G solvation = -4130.881341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.72608 -40.46340 -39.67206 -37.84095 -37.17461 -35.86285 -35.12931 -33.48606 -33.04242 -31.43486 -30.08855 -28.91127 -27.06539 -26.24566 -24.55534 -23.52888 -22.87264 -22.37136 -22.17918 -21.40024 -20.76034 -19.55322 -18.51413 -18.06869 -17.93868 -17.19662 -16.92758 -16.55838 -16.41075 -16.22948 -16.06833 -15.72935 -15.29054 -15.24976 -15.05129 -14.86120 -14.40587 -14.26177 -14.23061 -13.78683 -13.74189 -13.63571 -13.47668 -13.14885 -12.89885 -12.82097 -12.72684 -12.56072 -12.53655 -12.43480 -12.41447 -11.94259 -11.76714 -11.69750 -11.56072 -11.48165 -11.27691 -11.24757 -11.14774 -10.72262 -10.53877 -10.38170 -10.30740 -10.26777 -8.18983 -6.30096 0.30286 1.29121 1.42485 1.45117 1.53030 2.10156 2.42078 2.55390 2.68925 3.14764 3.41537 3.66593 3.78516 3.88584 4.01311 4.07998 4.13887 4.17726 4.22694 4.26326 4.30982 4.45575 4.51010 4.52120 4.54266 4.55852 4.61839 4.75370 4.81890 4.86461 4.91214 4.92701 5.00067 5.05902 5.12194 5.14718 5.16560 5.18229 5.22805 5.28558 5.31934 5.38610 5.42937 5.51411 5.54170 5.70611 5.84404 5.87434 6.22961 6.30638 6.31447 6.69100 6.86480 6.90317 7.39175 8.92653 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.001509 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.022842 B =18553.613745 C =19190.232904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.059 0.941 4 C -0.108 4.108 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.144 4.144 8 C 0.097 3.903 9 H 0.075 0.925 10 O -0.397 6.397 11 C 0.051 3.949 12 C 0.118 3.882 13 N -0.684 5.684 14 C 0.513 3.487 15 O -0.541 6.541 16 C 0.500 3.500 17 O -0.549 6.549 18 N -0.686 5.686 19 C 0.127 3.873 20 C -0.106 4.106 21 C 0.025 3.975 22 C -0.545 4.545 23 H 0.064 0.936 24 C -0.001 4.001 25 N -0.933 5.933 26 Si 0.966 3.034 27 H -0.267 1.267 28 H -0.285 1.285 29 H -0.267 1.267 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.418 0.582 46 H 0.419 0.581 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.066 0.934 51 H -0.004 1.004 52 H -0.003 1.003 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 -26.460 25.192 37.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.077 0.923 4 C -0.146 4.146 5 C -0.162 4.162 6 C -0.152 4.152 7 C -0.182 4.182 8 C 0.040 3.960 9 H 0.093 0.907 10 O -0.317 6.317 11 C -0.025 4.025 12 C -0.004 4.004 13 N -0.337 5.337 14 C 0.293 3.707 15 O -0.419 6.419 16 C 0.281 3.719 17 O -0.427 6.427 18 N -0.339 5.339 19 C 0.004 3.996 20 C -0.144 4.144 21 C -0.013 4.013 22 C -0.582 4.582 23 H 0.083 0.917 24 C -0.199 4.199 25 N -0.573 5.573 26 Si 0.791 3.209 27 H -0.192 1.192 28 H -0.210 1.210 29 H -0.191 1.191 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.255 0.745 46 H 0.257 0.743 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.014 0.986 52 H 0.015 0.985 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.785 -26.177 25.178 37.615 hybrid contribution 0.316 0.795 -0.812 1.179 sum -9.470 -25.382 24.366 36.437 Atomic orbital electron populations 1.21735 0.94437 1.02067 1.01658 1.21206 0.96347 0.99612 0.93652 0.92270 1.21562 0.95411 1.01025 0.96560 1.21589 0.95667 1.00685 0.98218 1.21480 1.00686 0.99509 0.93526 1.22053 0.95864 1.01203 0.99060 1.22194 0.92986 0.96120 0.84689 0.90740 1.87951 1.86761 1.36342 1.20679 1.22872 1.01760 0.92792 0.85125 1.21723 0.90642 0.91417 0.96639 1.45733 1.20700 1.35741 1.31523 1.19904 0.86898 0.82134 0.81714 1.90756 1.26214 1.70126 1.54829 1.20379 0.87652 0.82538 0.81341 1.90747 1.26887 1.70585 1.54495 1.45880 1.20445 1.35152 1.32395 1.21477 0.90275 0.90256 0.97601 1.21642 0.99571 0.97310 0.95846 1.18936 0.93863 0.93373 0.95142 1.21658 1.01584 1.18717 1.16290 0.91747 1.25987 0.95038 0.98594 1.00275 1.70097 1.09892 1.34002 1.43272 0.85485 0.78014 0.78287 0.79159 1.19187 1.21039 1.19139 0.92011 0.92449 0.93219 0.91074 0.90878 0.92739 0.90825 0.91554 0.90940 0.91485 0.92676 0.88935 0.91323 0.90695 0.88091 0.74460 0.74323 0.91871 0.91681 0.91374 0.91487 0.98581 0.98487 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.05 71.98 0.65 -0.92 16 2 C -0.09 -1.05 2.46 -10.79 -0.03 -1.08 16 3 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -0.92 5.20 30.59 0.16 -0.76 16 5 C -0.12 -1.10 5.92 30.59 0.18 -0.92 16 6 C -0.11 -1.02 5.92 30.59 0.18 -0.84 16 7 C -0.14 -1.69 5.54 30.58 0.17 -1.52 16 8 C 0.10 1.11 2.04 30.58 0.06 1.17 16 9 H 0.07 0.62 7.79 -2.39 -0.02 0.61 16 10 O -0.40 -5.80 9.26 -148.98 -1.38 -7.18 16 11 C 0.05 0.50 5.88 71.98 0.42 0.93 16 12 C 0.12 1.67 6.06 86.38 0.52 2.20 16 13 N -0.68 -13.65 5.50 -464.42 -2.55 -16.20 16 14 C 0.51 13.42 7.89 87.27 0.69 14.10 16 15 O -0.54 -15.87 16.48 -3.26 -0.05 -15.92 16 16 C 0.50 15.16 7.89 87.27 0.69 15.85 16 17 O -0.55 -19.10 16.48 -3.23 -0.05 -19.15 16 18 N -0.69 -20.68 5.55 -464.43 -2.58 -23.26 16 19 C 0.13 4.44 5.67 86.38 0.49 4.93 16 20 C -0.11 -4.13 5.27 30.60 0.16 -3.97 16 21 C 0.02 1.27 4.97 29.85 0.15 1.42 16 22 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 23 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 24 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 25 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 26 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 29 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.70 7.68 -2.39 -0.02 0.68 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.07 0.73 7.87 -2.39 -0.02 0.71 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 0.50 8.09 -2.38 -0.02 0.48 16 42 H 0.07 0.56 7.87 -2.39 -0.02 0.54 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.42 8.12 7.94 -92.71 -0.74 7.38 16 46 H 0.42 11.31 7.94 -92.71 -0.74 10.58 16 47 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 48 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 51 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 52 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 53 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -69.51 429.52 0.30 -69.20 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.59 Total: 22.24 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.20 Total: 0.65 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.84 Total: -95.93 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.49 Total: -42.25 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.51 0.30 -69.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340336283.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.420 kcal (2) G-P(sol) polarization free energy of solvation -69.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds