Wall clock time and date at job start Tue Mar 31 2020 23:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47137 * 2 1 4 4 C 1.53003 * 109.46762 * 120.00170 * 2 1 3 5 5 C 1.53002 * 109.46762 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47038 * 299.99813 * 5 4 2 7 7 C 1.53001 * 109.47096 * 60.00077 * 6 5 4 8 8 C 1.52999 * 109.46761 * 239.99747 * 2 1 3 9 9 H 1.08994 * 109.47235 * 60.00488 * 8 2 1 10 10 O 1.42897 * 109.47246 * 299.99868 * 8 2 1 11 11 C 1.42902 * 113.99864 * 150.00271 * 10 8 2 12 12 C 1.52996 * 109.47328 * 180.02562 * 11 10 8 13 13 N 1.46498 * 109.47059 * 64.99617 * 12 11 10 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 11 15 15 O 1.21353 * 120.00267 * 0.28147 * 14 13 12 16 16 C 1.49454 * 120.00301 * 180.27890 * 14 13 12 17 17 O 1.21353 * 119.99427 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00297 * 180.02562 * 16 14 13 19 19 C 1.46495 * 119.99663 * 180.02562 * 18 16 14 20 20 C 1.53004 * 109.46738 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.46988 * 179.97438 * 20 19 18 22 22 C 1.50701 * 109.46979 * 180.02562 * 21 20 19 23 23 H 1.07998 * 120.00149 * 359.97438 * 22 21 20 24 24 C 1.37882 * 119.99762 * 180.02562 * 22 21 20 25 25 N 1.31515 * 120.00097 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99835 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46973 * 89.99891 * 26 24 22 28 28 H 1.48493 * 109.47274 * 209.99829 * 26 24 22 29 29 H 1.48500 * 109.47089 * 330.00069 * 26 24 22 30 30 H 1.08996 * 109.47137 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46852 * 300.00013 * 1 2 3 32 32 H 1.08997 * 109.47016 * 59.99507 * 1 2 3 33 33 H 1.09003 * 109.47287 * 299.99550 * 4 2 1 34 34 H 1.08996 * 109.47433 * 60.00011 * 4 2 1 35 35 H 1.09003 * 109.47451 * 59.99640 * 5 4 2 36 36 H 1.09003 * 109.46916 * 179.97438 * 5 4 2 37 37 H 1.09005 * 109.46740 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.46858 * 300.00190 * 6 5 4 39 39 H 1.08998 * 109.46787 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.47175 * 60.00306 * 7 6 5 41 41 H 1.08997 * 109.47069 * 59.99874 * 11 10 8 42 42 H 1.09008 * 109.46887 * 300.00568 * 11 10 8 43 43 H 1.09004 * 109.47066 * 304.99885 * 12 11 10 44 44 H 1.08994 * 109.46974 * 185.00032 * 12 11 10 45 45 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 46 46 H 0.97000 * 119.99736 * 359.97438 * 18 16 14 47 47 H 1.09007 * 109.47376 * 299.99203 * 19 18 16 48 48 H 1.08997 * 109.47774 * 59.99894 * 19 18 16 49 49 H 1.09006 * 109.47053 * 299.99454 * 20 19 18 50 50 H 1.08997 * 109.47419 * 59.99839 * 20 19 18 51 51 H 1.09007 * 109.47300 * 299.99413 * 21 20 19 52 52 H 1.08997 * 109.47600 * 59.99950 * 21 20 19 53 53 H 0.97000 * 119.99613 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0003 7 6 3.5694 -0.7222 -1.2495 8 6 2.0399 -0.7213 -1.2492 9 1 1.6767 -0.2075 -2.1392 10 8 1.5636 -2.0686 -1.2492 11 6 1.3698 -2.6166 -2.5546 12 6 0.8608 -4.0543 -2.4338 13 7 -0.4663 -4.0520 -1.8135 14 6 -1.1172 -5.2145 -1.6103 15 8 -0.6018 -6.2636 -1.9364 16 6 -2.4738 -5.2118 -0.9832 17 8 -2.9890 -4.1627 -0.6565 18 7 -3.1245 -6.3744 -0.7794 19 6 -4.4544 -6.3715 -0.1652 20 6 -4.9658 -7.8089 -0.0494 21 6 -6.3545 -7.8060 0.5926 22 6 -6.8579 -9.2218 0.7073 23 1 -6.2484 -10.0416 0.3569 24 6 -8.0970 -9.4704 1.2586 25 7 -8.8393 -8.4720 1.6849 26 14 -8.7212 -11.2253 1.4001 27 1 -8.3014 -11.7963 2.7051 28 1 -10.2034 -11.2322 1.3108 29 1 -8.1550 -12.0426 0.2971 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6766 -0.2075 2.1393 34 1 1.6766 -1.7489 1.2493 35 1 3.9337 0.3057 1.2487 36 1 3.9333 -1.2354 2.1392 37 1 5.1695 -1.4443 -0.0003 38 1 3.7156 -2.4710 0.0000 39 1 3.9327 -1.2361 -2.1395 40 1 3.9332 0.3053 -1.2498 41 1 2.3161 -2.6100 -3.0955 42 1 0.6380 -2.0166 -3.0956 43 1 1.5490 -4.6328 -1.8174 44 1 0.7976 -4.5019 -3.4256 45 1 -0.8786 -3.2134 -1.5531 46 1 -2.7124 -7.2129 -1.0402 47 1 -4.3952 -5.9255 0.8276 48 1 -5.1392 -5.7914 -0.7839 49 1 -5.0251 -8.2545 -1.0424 50 1 -4.2812 -8.3894 0.5690 51 1 -6.2948 -7.3605 1.5857 52 1 -7.0394 -7.2254 -0.0254 53 1 -9.7109 -8.6470 2.0731 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340336285.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:40 Heat of formation + Delta-G solvation = -180.510043 kcal Electronic energy + Delta-G solvation = -29453.302399 eV Core-core repulsion = 25322.512638 eV Total energy + Delta-G solvation = -4130.789761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.71623 -40.53905 -39.65966 -37.59239 -37.13006 -35.74679 -35.10740 -33.47188 -33.04004 -31.37102 -30.25196 -28.91282 -27.05874 -26.24035 -24.52323 -23.43616 -23.10488 -22.36859 -22.12603 -21.37411 -20.52802 -19.57651 -18.51907 -18.03954 -17.45565 -17.19966 -16.88282 -16.66693 -16.46796 -16.24417 -16.12438 -16.03378 -15.26130 -15.20022 -14.89827 -14.74081 -14.28055 -14.20632 -14.10025 -13.94711 -13.77869 -13.59737 -13.44775 -13.05122 -12.88711 -12.80744 -12.75900 -12.55204 -12.48715 -12.40235 -12.37207 -12.17366 -11.72696 -11.70106 -11.56105 -11.37371 -11.29598 -11.23548 -10.82242 -10.71792 -10.54684 -10.36332 -10.27465 -10.26518 -8.19314 -6.30241 0.31274 1.30113 1.42305 1.43136 1.54295 2.11100 2.41780 2.59991 2.74252 3.14519 3.42466 3.71573 3.84249 3.89237 3.98798 4.08260 4.17794 4.18171 4.27485 4.28131 4.42820 4.47350 4.52331 4.57830 4.58167 4.62773 4.66020 4.81418 4.82028 4.86864 4.91368 4.95065 4.99008 5.09750 5.11782 5.14700 5.16317 5.23268 5.24589 5.33281 5.36926 5.44311 5.47724 5.51598 5.63533 5.70662 5.84439 5.88532 6.22970 6.32517 6.35711 6.70213 6.86578 6.91271 7.39044 8.92538 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.001626 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.803320 B =17216.841237 C =17783.535549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.091 0.909 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.137 4.137 8 C 0.093 3.907 9 H 0.073 0.927 10 O -0.388 6.388 11 C 0.051 3.949 12 C 0.119 3.881 13 N -0.683 5.683 14 C 0.513 3.487 15 O -0.542 6.542 16 C 0.500 3.500 17 O -0.548 6.548 18 N -0.687 5.687 19 C 0.127 3.873 20 C -0.106 4.106 21 C 0.024 3.976 22 C -0.543 4.543 23 H 0.064 0.936 24 C -0.002 4.002 25 N -0.933 5.933 26 Si 0.966 3.034 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.262 1.262 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.418 0.582 46 H 0.419 0.581 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.066 0.934 51 H -0.004 1.004 52 H -0.003 1.003 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.434 19.768 -9.318 36.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.109 0.891 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.175 4.175 8 C 0.036 3.964 9 H 0.091 0.909 10 O -0.308 6.308 11 C -0.026 4.026 12 C -0.003 4.003 13 N -0.336 5.336 14 C 0.293 3.707 15 O -0.420 6.420 16 C 0.281 3.719 17 O -0.426 6.426 18 N -0.339 5.339 19 C 0.004 3.996 20 C -0.144 4.144 21 C -0.013 4.013 22 C -0.581 4.581 23 H 0.082 0.918 24 C -0.200 4.200 25 N -0.573 5.573 26 Si 0.791 3.209 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.186 1.186 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.256 0.744 46 H 0.256 0.744 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.014 0.986 52 H 0.015 0.985 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 29.258 19.710 -9.082 36.429 hybrid contribution -0.819 -0.707 0.269 1.115 sum 28.439 19.003 -8.813 35.321 Atomic orbital electron populations 1.21771 0.95169 1.01648 1.01766 1.21252 0.95670 0.99227 0.94175 0.89059 1.21485 0.95810 1.00315 0.97246 1.21520 0.95189 1.00887 0.97903 1.21393 0.99889 0.99378 0.94436 1.22007 0.95237 1.01797 0.98466 1.22190 0.93502 0.82454 0.98267 0.90867 1.87974 1.86741 1.28679 1.27427 1.22844 1.01514 0.92367 0.85859 1.21697 0.81771 0.97478 0.99382 1.45724 1.19107 1.08631 1.60098 1.19914 0.85931 0.84931 0.79923 1.90756 1.68267 1.31704 1.51296 1.20383 0.86874 0.84472 0.80196 1.90749 1.68671 1.31707 1.51485 1.45879 1.18762 1.09339 1.59926 1.21473 0.81645 0.98743 0.97716 1.21643 0.97619 0.93640 1.01475 1.18940 0.91766 0.95954 0.94672 1.21681 1.02381 0.93935 1.40071 0.91766 1.25989 0.97229 1.01684 0.95064 1.70100 1.11867 1.33173 1.42144 0.85433 0.77243 0.79393 0.78879 1.19888 1.20915 1.18645 0.93460 0.92884 0.92162 0.92411 0.93237 0.91323 0.92566 0.91786 0.92929 0.91169 0.90073 0.89268 0.91238 0.90872 0.88328 0.74444 0.74354 0.91867 0.91688 0.91394 0.91508 0.98573 0.98469 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.05 71.98 0.65 -1.36 16 2 C -0.08 -0.98 2.55 -10.79 -0.03 -1.01 16 3 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.11 -1.56 5.06 30.60 0.15 -1.40 16 5 C -0.12 -1.37 5.92 30.60 0.18 -1.19 16 6 C -0.11 -1.26 5.78 30.60 0.18 -1.09 16 7 C -0.14 -1.15 5.62 30.58 0.17 -0.98 16 8 C 0.09 0.93 2.35 30.58 0.07 1.01 16 9 H 0.07 0.54 7.79 -2.39 -0.02 0.53 16 10 O -0.39 -5.13 7.91 -148.98 -1.18 -6.31 16 11 C 0.05 0.47 5.88 71.98 0.42 0.89 16 12 C 0.12 1.65 6.06 86.38 0.52 2.17 16 13 N -0.68 -13.32 5.50 -464.41 -2.55 -15.87 16 14 C 0.51 13.28 7.89 87.27 0.69 13.97 16 15 O -0.54 -15.86 16.48 -3.26 -0.05 -15.91 16 16 C 0.50 15.02 7.89 87.27 0.69 15.71 16 17 O -0.55 -18.82 16.48 -3.26 -0.05 -18.88 16 18 N -0.69 -20.59 5.55 -464.40 -2.58 -23.17 16 19 C 0.13 4.43 5.67 86.38 0.49 4.92 16 20 C -0.11 -4.13 5.27 30.60 0.16 -3.97 16 21 C 0.02 1.26 4.97 29.85 0.15 1.41 16 22 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 23 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 24 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 25 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 26 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 28 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 29 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 30 H 0.05 0.83 7.68 -2.39 -0.02 0.81 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.05 0.78 7.68 -2.39 -0.02 0.76 16 39 H 0.07 0.49 7.87 -2.39 -0.02 0.47 16 40 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.09 0.47 7.87 -2.39 -0.02 0.45 16 42 H 0.07 0.50 8.09 -2.38 -0.02 0.48 16 43 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.42 7.87 7.94 -92.71 -0.74 7.14 16 46 H 0.42 11.28 7.94 -92.71 -0.74 10.55 16 47 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 48 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 50 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 51 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 52 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 53 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -69.19 427.45 0.51 -68.68 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.59 Total: 22.53 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 5.20 Total: -0.76 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -4.84 Total: -95.48 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.29 Total: -41.10 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.19 0.51 -68.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340336285.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.826 kcal (2) G-P(sol) polarization free energy of solvation -69.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds