Wall clock time and date at job start Tue Mar 31 2020 23:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47549 * 2 1 4 4 C 1.52997 * 109.46984 * 239.99879 * 2 1 3 5 5 C 1.53002 * 109.47020 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47331 * 59.99912 * 5 4 2 7 7 C 1.53000 * 109.46843 * 300.00221 * 6 5 4 8 8 C 1.52993 * 109.47332 * 59.99953 * 7 6 5 9 9 H 1.08999 * 109.47241 * 59.99879 * 8 7 6 10 10 O 1.42898 * 109.47325 * 179.97438 * 8 7 6 11 11 C 1.42896 * 114.00396 * 270.00047 * 10 8 7 12 12 C 1.52999 * 109.47682 * 179.97438 * 11 10 8 13 13 N 1.46506 * 109.46691 * 64.99868 * 12 11 10 14 14 C 1.34777 * 119.99880 * 179.97438 * 13 12 11 15 15 O 1.21351 * 119.99897 * 0.02562 * 14 13 12 16 16 C 1.49446 * 120.00260 * 180.02562 * 14 13 12 17 17 O 1.21351 * 119.99843 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00256 * 180.02562 * 16 14 13 19 19 C 1.46506 * 119.99873 * 180.02562 * 18 16 14 20 20 C 1.52999 * 109.46684 * 179.97438 * 19 18 16 21 21 C 1.53006 * 109.46623 * 179.97438 * 20 19 18 22 22 C 1.50699 * 109.46866 * 179.97438 * 21 20 19 23 23 H 1.08003 * 119.99962 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00270 * 180.02562 * 22 21 20 25 25 N 1.31522 * 119.99834 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00496 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47325 * 59.99531 * 26 24 22 28 28 H 1.48496 * 109.47425 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47183 * 299.99726 * 26 24 22 30 30 H 1.08997 * 109.47182 * 300.00588 * 1 2 3 31 31 H 1.08999 * 109.46978 * 59.99715 * 1 2 3 32 32 H 1.08999 * 109.47549 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47226 * 60.00668 * 4 2 1 34 34 H 1.08999 * 109.47241 * 299.99881 * 4 2 1 35 35 H 1.08999 * 109.47100 * 299.99868 * 5 4 2 36 36 H 1.08998 * 109.47443 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.46980 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.47064 * 59.99934 * 6 5 4 39 39 H 1.08999 * 109.47056 * 299.99718 * 7 6 5 40 40 H 1.09004 * 109.47065 * 180.02562 * 7 6 5 41 41 H 1.09000 * 109.46953 * 59.99921 * 11 10 8 42 42 H 1.09002 * 109.47346 * 300.00006 * 11 10 8 43 43 H 1.09000 * 109.47160 * 305.00415 * 12 11 10 44 44 H 1.08993 * 109.47839 * 184.99977 * 12 11 10 45 45 H 0.96999 * 120.00076 * 0.02562 * 13 12 11 46 46 H 0.96999 * 120.00047 * 359.97438 * 18 16 14 47 47 H 1.09000 * 109.47212 * 59.99645 * 19 18 16 48 48 H 1.09001 * 109.46577 * 299.99570 * 19 18 16 49 49 H 1.09000 * 109.47486 * 59.99935 * 20 19 18 50 50 H 1.09001 * 109.47362 * 299.99212 * 20 19 18 51 51 H 1.08993 * 109.46955 * 300.00075 * 21 20 19 52 52 H 1.09000 * 109.47050 * 59.99904 * 21 20 19 53 53 H 0.96992 * 120.00032 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6758 -1.7491 1.2491 10 8 1.5631 -0.0484 2.4163 11 6 1.3689 -0.9054 3.5431 12 6 0.8611 -0.0822 4.7286 13 7 -0.4657 0.4553 4.4171 14 6 -1.1135 1.2169 5.3210 15 8 -0.5975 1.4577 6.3926 16 6 -2.4672 1.7648 5.0036 17 8 -2.9834 1.5236 3.9321 18 7 -3.1147 2.5267 5.9072 19 6 -4.4420 3.0633 5.5962 20 6 -4.9499 3.8862 6.7818 21 6 -6.3358 4.4471 6.4567 22 6 -6.8365 5.2572 7.6247 23 1 -6.2273 5.3611 8.5105 24 6 -8.0726 5.8647 7.5631 25 7 -8.8147 5.7377 6.4846 26 14 -8.6929 6.8693 9.0105 27 1 -7.7551 7.9902 9.2733 28 1 -10.0381 7.4137 8.6951 29 1 -8.7786 6.0032 10.2138 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6767 -0.2074 -2.1391 34 1 1.6766 -1.7489 -1.2492 35 1 3.9337 0.3057 -1.2487 36 1 3.9333 -1.2353 -2.1391 37 1 5.1695 -1.4434 0.0008 38 1 3.7158 -2.4709 0.0002 39 1 3.9332 0.3054 1.2497 40 1 3.9328 -1.2359 2.1396 41 1 2.3149 -1.3776 3.8078 42 1 0.6368 -1.6735 3.2935 43 1 1.5500 0.7401 4.9216 44 1 0.7974 -0.7178 5.6117 45 1 -0.8783 0.2625 3.5607 46 1 -2.7022 2.7192 6.7638 47 1 -5.1306 2.2406 5.4037 48 1 -4.3790 3.6987 4.7128 49 1 -4.2615 4.7089 6.9747 50 1 -5.0130 3.2505 7.6650 51 1 -6.2725 5.0829 5.5737 52 1 -7.0245 3.6247 6.2636 53 1 -9.6841 6.1654 6.4411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340336286.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:44 Heat of formation + Delta-G solvation = -182.563054 kcal Electronic energy + Delta-G solvation = -29049.677872 eV Core-core repulsion = 24918.799085 eV Total energy + Delta-G solvation = -4130.878787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.72146 -40.46095 -39.66637 -37.83887 -37.16917 -35.86047 -35.12533 -33.49627 -33.03857 -31.41743 -30.08839 -28.90745 -27.07366 -26.25033 -24.55558 -23.45648 -22.93602 -22.36706 -22.18447 -21.37988 -20.76124 -19.55691 -18.51232 -18.10927 -17.85900 -17.20714 -16.90312 -16.55907 -16.42934 -16.24077 -16.05043 -15.75240 -15.29741 -15.22991 -15.03515 -14.88932 -14.30093 -14.26427 -14.16025 -13.97377 -13.78197 -13.59065 -13.43827 -13.15305 -12.89172 -12.79941 -12.72530 -12.57897 -12.53967 -12.43282 -12.37992 -11.97317 -11.76672 -11.69434 -11.55566 -11.47588 -11.25722 -11.24810 -11.14650 -10.72710 -10.53623 -10.37134 -10.30207 -10.27034 -8.18719 -6.29848 0.30744 1.29440 1.42644 1.45193 1.53118 2.10605 2.42246 2.55582 2.68793 3.15052 3.41806 3.66679 3.78362 3.88445 4.01795 4.08403 4.14445 4.18092 4.21154 4.28245 4.31643 4.43770 4.51200 4.52471 4.54855 4.56691 4.62097 4.75612 4.80268 4.86834 4.91575 4.92533 5.00204 5.06534 5.13275 5.15092 5.15971 5.18648 5.23170 5.28995 5.32039 5.38769 5.42703 5.51667 5.54216 5.70964 5.84686 5.87856 6.23244 6.30562 6.31963 6.69539 6.86716 6.90727 7.39480 8.92898 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023780 B = 0.001513 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.169179 B =18502.419219 C =19381.121436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.123 4.123 6 C -0.115 4.115 7 C -0.139 4.139 8 C 0.096 3.904 9 H 0.071 0.929 10 O -0.398 6.398 11 C 0.051 3.949 12 C 0.118 3.882 13 N -0.684 5.684 14 C 0.513 3.487 15 O -0.542 6.542 16 C 0.500 3.500 17 O -0.548 6.548 18 N -0.687 5.687 19 C 0.127 3.873 20 C -0.106 4.106 21 C 0.025 3.975 22 C -0.545 4.545 23 H 0.064 0.936 24 C 0.000 4.000 25 N -0.932 5.932 26 Si 0.966 3.034 27 H -0.267 1.267 28 H -0.285 1.285 29 H -0.266 1.266 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.418 0.582 46 H 0.419 0.581 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.067 0.933 51 H -0.004 1.004 52 H -0.003 1.003 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.314 -19.454 -13.270 37.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.177 4.177 8 C 0.038 3.962 9 H 0.089 0.911 10 O -0.317 6.317 11 C -0.025 4.025 12 C -0.004 4.004 13 N -0.337 5.337 14 C 0.293 3.707 15 O -0.419 6.419 16 C 0.281 3.719 17 O -0.426 6.426 18 N -0.339 5.339 19 C 0.004 3.996 20 C -0.144 4.144 21 C -0.013 4.013 22 C -0.582 4.582 23 H 0.082 0.918 24 C -0.198 4.198 25 N -0.573 5.573 26 Si 0.790 3.210 27 H -0.192 1.192 28 H -0.210 1.210 29 H -0.191 1.191 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.255 0.745 46 H 0.257 0.743 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.086 0.914 51 H 0.014 0.986 52 H 0.015 0.985 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 29.136 -19.219 -13.341 37.367 hybrid contribution -0.770 0.607 0.490 1.096 sum 28.366 -18.612 -12.851 36.280 Atomic orbital electron populations 1.21763 0.94974 1.01922 1.01614 1.21196 0.95824 0.99771 0.93851 0.91970 1.21569 0.95796 1.00873 0.96498 1.21583 0.95240 1.00853 0.98367 1.21488 1.00840 0.99412 0.93469 1.22021 0.95241 1.01350 0.99085 1.22216 0.93447 0.95933 0.84558 0.91098 1.87950 1.86832 1.36247 1.20716 1.22866 1.01654 0.92519 0.85500 1.21718 0.81837 0.98872 0.97994 1.45733 1.19231 1.49453 1.19265 1.19914 0.85924 0.80086 0.84748 1.90756 1.68103 1.58940 1.24151 1.20369 0.86826 0.80134 0.84580 1.90749 1.68482 1.59196 1.24187 1.45882 1.18998 1.49323 1.19691 1.21478 0.81722 0.97447 0.98943 1.21645 0.97658 0.98639 0.96446 1.18933 0.91765 0.94780 0.95815 1.21656 1.02637 1.31586 1.02366 0.91768 1.25975 0.97175 0.97804 0.98881 1.70094 1.11972 1.45431 1.29760 0.85494 0.77320 0.78961 0.79225 1.19211 1.21033 1.19134 0.93383 0.92693 0.92221 0.91307 0.91156 0.92438 0.90885 0.91095 0.91200 0.92340 0.91098 0.89126 0.91149 0.90755 0.88082 0.74454 0.74342 0.91676 0.91849 0.91509 0.91384 0.98564 0.98489 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.05 71.98 0.65 -1.46 16 2 C -0.09 -1.12 2.46 -10.79 -0.03 -1.14 16 3 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.11 -1.02 5.20 30.59 0.16 -0.87 16 5 C -0.12 -0.99 5.92 30.60 0.18 -0.81 16 6 C -0.11 -0.84 5.92 30.60 0.18 -0.65 16 7 C -0.14 -1.34 5.54 30.59 0.17 -1.17 16 8 C 0.10 1.09 2.04 30.59 0.06 1.15 16 9 H 0.07 0.65 7.78 -2.39 -0.02 0.64 16 10 O -0.40 -5.80 9.26 -148.98 -1.38 -7.18 16 11 C 0.05 0.51 5.88 71.98 0.42 0.93 16 12 C 0.12 1.68 6.06 86.38 0.52 2.20 16 13 N -0.68 -13.55 5.50 -464.41 -2.55 -16.10 16 14 C 0.51 13.35 7.89 87.27 0.69 14.04 16 15 O -0.54 -15.86 16.48 -3.25 -0.05 -15.91 16 16 C 0.50 15.06 7.89 87.27 0.69 15.75 16 17 O -0.55 -18.87 16.48 -3.25 -0.05 -18.92 16 18 N -0.69 -20.60 5.55 -464.40 -2.58 -23.18 16 19 C 0.13 4.43 5.67 86.38 0.49 4.92 16 20 C -0.11 -4.13 5.27 30.60 0.16 -3.97 16 21 C 0.02 1.28 4.97 29.85 0.15 1.43 16 22 C -0.54 -30.54 9.11 25.60 0.23 -30.30 16 23 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 24 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 25 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 26 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 29 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 30 H 0.05 0.86 7.68 -2.39 -0.02 0.84 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.57 7.87 -2.38 -0.02 0.55 16 41 H 0.09 0.52 7.87 -2.39 -0.02 0.50 16 42 H 0.07 0.55 8.08 -2.39 -0.02 0.54 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 44 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.42 8.00 7.94 -92.71 -0.74 7.27 16 46 H 0.42 11.28 7.94 -92.71 -0.74 10.54 16 47 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 50 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 51 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 52 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 53 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -69.21 429.53 0.30 -68.90 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.59 Total: 22.26 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 5.20 Total: 0.48 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -4.84 Total: -95.67 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.49 Total: -42.02 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -69.21 0.30 -68.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340336286.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.659 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds