Wall clock time and date at job start Tue Mar 31 2020 23:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99880 * 2 1 4 4 C 1.53004 * 109.46903 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47095 * 65.00021 * 4 3 2 6 6 C 1.34773 * 119.99945 * 269.60267 * 5 4 3 7 7 O 1.21347 * 120.00422 * 185.42789 * 6 5 4 8 8 C 1.49456 * 120.00115 * 5.42902 * 6 5 4 9 9 O 1.21346 * 119.99819 * 355.21053 * 8 6 5 10 10 N 1.34779 * 120.00008 * 175.21338 * 8 6 5 11 11 C 1.46502 * 119.99908 * 179.97438 * 10 8 6 12 12 C 1.52989 * 109.47192 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.47485 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47228 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00442 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00242 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00257 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47060 * 59.99739 * 18 16 14 20 20 H 1.48496 * 109.47221 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46794 * 300.00040 * 18 16 14 22 22 C 1.46494 * 120.00128 * 89.59981 * 5 4 3 23 23 H 1.09008 * 110.53913 * 357.24841 * 22 5 4 24 24 C 1.54889 * 110.48771 * 119.86466 * 22 5 4 25 25 C 1.54891 * 102.74753 * 156.62128 * 24 22 5 26 26 C 1.54262 * 104.19888 * 322.05590 * 25 24 22 27 27 H 1.08996 * 110.03276 * 264.32740 * 26 25 24 28 28 C 1.53001 * 110.03123 * 142.89361 * 26 25 24 29 29 C 1.53880 * 106.59755 * 23.61211 * 26 25 24 30 30 H 1.09005 * 109.46964 * 59.99960 * 1 2 3 31 31 H 1.08997 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47246 * 300.00294 * 1 2 3 33 33 H 1.08998 * 109.47274 * 60.00307 * 3 2 1 34 34 H 1.09001 * 109.47024 * 299.99840 * 3 2 1 35 35 H 1.09000 * 109.47038 * 304.99835 * 4 3 2 36 36 H 1.09002 * 109.47083 * 184.99795 * 4 3 2 37 37 H 0.96992 * 119.99906 * 359.97438 * 10 8 6 38 38 H 1.09000 * 109.46974 * 300.00419 * 11 10 8 39 39 H 1.09000 * 109.46713 * 59.99772 * 11 10 8 40 40 H 1.09000 * 109.47514 * 300.00101 * 12 11 10 41 41 H 1.09000 * 109.47466 * 60.00246 * 12 11 10 42 42 H 1.09000 * 109.46553 * 300.00353 * 13 12 11 43 43 H 1.09000 * 109.46842 * 59.99528 * 13 12 11 44 44 H 0.96999 * 120.00064 * 179.97438 * 17 16 14 45 45 H 1.08996 * 110.75243 * 38.30516 * 24 22 5 46 46 H 1.08998 * 110.75044 * 274.93317 * 24 22 5 47 47 H 1.09003 * 110.48659 * 203.37662 * 25 24 22 48 48 H 1.09003 * 110.60068 * 80.79529 * 25 24 22 49 49 H 1.08997 * 109.47033 * 302.83332 * 28 26 25 50 50 H 1.08999 * 109.47040 * 62.84095 * 28 26 25 51 51 H 1.09008 * 109.46866 * 182.83551 * 28 26 25 52 52 H 1.09001 * 110.03492 * 119.28215 * 29 26 25 53 53 H 1.08993 * 110.03605 * 240.71753 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1036 -0.7754 -1.3307 7 8 4.5622 -1.2828 -2.3330 8 6 3.6794 -1.6358 -0.1846 9 8 3.3024 -1.1259 0.8499 10 7 3.7157 -2.9782 -0.3002 11 6 3.3004 -3.8216 0.8234 12 6 3.4361 -5.2946 0.4328 13 6 3.0018 -6.1755 1.6060 14 6 3.1349 -7.6263 1.2211 15 1 3.4937 -7.8935 0.2381 16 6 2.7995 -8.6127 2.1241 17 7 2.3639 -8.2874 3.3216 18 14 2.9651 -10.4112 1.6472 19 1 4.3800 -10.7043 1.3049 20 1 2.5435 -11.2661 2.7859 21 1 2.1028 -10.6929 0.4715 22 6 4.2799 1.3991 -2.4156 23 1 4.0797 2.4480 -2.1967 24 6 5.7540 1.2079 -2.8508 25 6 5.7273 1.6266 -4.3419 26 6 4.3817 1.0819 -4.8637 27 1 4.5299 0.1108 -5.3361 28 6 3.7713 2.0648 -5.8648 29 6 3.4613 0.9373 -3.6390 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1766 0.0902 37 1 4.0167 -3.3858 -1.1273 38 1 3.9330 -3.6143 1.6865 39 1 2.2617 -3.6068 1.0744 40 1 2.8032 -5.5015 -0.4301 41 1 4.4747 -5.5097 0.1816 42 1 3.6344 -5.9686 2.4692 43 1 1.9631 -5.9602 1.8569 44 1 2.1276 -8.9814 3.9568 45 1 6.0551 0.1654 -2.7476 46 1 6.4134 1.8601 -2.2783 47 1 6.5580 1.1712 -4.8810 48 1 5.7619 2.7120 -4.4361 49 1 3.6505 3.0386 -5.3904 50 1 4.4299 2.1602 -6.7280 51 1 2.7983 1.6955 -6.1894 52 1 2.5798 1.5673 -3.7579 53 1 3.1629 -0.1039 -3.5170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343155578.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:14 Heat of formation + Delta-G solvation = -142.119887 kcal Electronic energy + Delta-G solvation = -31148.956354 eV Core-core repulsion = 27019.831315 eV Total energy + Delta-G solvation = -4129.125039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.04004 -40.09344 -38.80073 -38.41140 -37.16054 -36.12740 -35.07217 -32.96965 -31.95631 -30.50499 -29.40859 -28.74712 -27.23379 -26.47474 -25.42344 -24.28292 -23.37046 -22.31391 -22.10821 -20.78160 -20.18098 -18.70893 -18.48949 -17.75963 -17.29137 -17.28516 -16.97623 -16.65885 -16.48980 -16.30495 -16.05284 -15.60489 -15.38607 -15.31258 -14.86818 -14.75073 -14.35063 -14.25999 -14.02811 -13.76670 -13.56408 -13.42472 -13.26867 -13.20319 -12.90769 -12.72240 -12.58518 -12.50282 -12.42662 -12.34222 -12.29024 -12.00146 -11.69115 -11.67306 -11.58704 -11.51646 -11.39087 -11.25708 -11.22921 -10.54303 -10.50342 -10.11947 -10.07683 -9.70501 -8.19193 -6.30301 0.53449 1.39770 1.42049 1.44331 1.52262 2.31454 2.40937 2.50963 3.02492 3.14212 3.42401 3.63556 3.71085 3.89893 4.14025 4.19340 4.21311 4.22287 4.29972 4.39843 4.45503 4.48143 4.51982 4.55183 4.56004 4.57778 4.62510 4.69490 4.74264 4.84139 4.89848 4.94224 4.95315 4.95945 5.03425 5.08058 5.15360 5.15655 5.23372 5.33854 5.38208 5.43328 5.52014 5.59320 5.66128 5.71068 5.84295 6.03700 6.23163 6.36334 6.39498 6.82929 6.86197 7.13228 7.38781 8.92528 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014706 B = 0.002328 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.510593 B =12023.905276 C =13046.272250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.398 6.398 3 C 0.048 3.952 4 C 0.086 3.914 5 N -0.569 5.569 6 C 0.516 3.484 7 O -0.537 6.537 8 C 0.500 3.500 9 O -0.507 6.507 10 N -0.699 5.699 11 C 0.137 3.863 12 C -0.105 4.105 13 C 0.027 3.973 14 C -0.543 4.543 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.267 1.267 22 C 0.139 3.861 23 H 0.129 0.871 24 C -0.139 4.139 25 C -0.108 4.108 26 C -0.091 4.091 27 H 0.051 0.949 28 C -0.139 4.139 29 C -0.126 4.126 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.412 0.588 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.064 0.936 42 H -0.004 1.004 43 H -0.005 1.005 44 H 0.264 0.736 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.088 0.912 49 H 0.068 0.932 50 H 0.059 0.941 51 H 0.049 0.951 52 H 0.075 0.925 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 29.133 -14.479 32.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.317 6.317 3 C -0.029 4.029 4 C -0.036 4.036 5 N -0.300 5.300 6 C 0.298 3.702 7 O -0.415 6.415 8 C 0.281 3.719 9 O -0.383 6.383 10 N -0.352 5.352 11 C 0.014 3.986 12 C -0.143 4.143 13 C -0.010 4.010 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.192 1.192 22 C 0.038 3.962 23 H 0.147 0.853 24 C -0.177 4.177 25 C -0.146 4.146 26 C -0.110 4.110 27 H 0.070 0.930 28 C -0.197 4.197 29 C -0.165 4.165 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.248 0.752 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.014 0.986 43 H 0.013 0.987 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.087 0.913 50 H 0.078 0.922 51 H 0.068 0.932 52 H 0.094 0.906 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.360 29.019 -14.085 32.343 hybrid contribution -0.388 -1.410 -0.080 1.465 sum 1.972 27.609 -14.165 31.093 Atomic orbital electron populations 1.22729 0.81191 1.02295 1.00372 1.88102 1.19732 1.28497 1.95359 1.22972 0.93953 0.84892 1.01074 1.22538 0.93307 1.01294 0.86453 1.47835 1.63763 1.04246 1.14201 1.19993 0.79183 0.83954 0.87042 1.90699 1.44343 1.74080 1.32361 1.20267 0.79521 0.83444 0.88690 1.90619 1.44768 1.72416 1.30477 1.45838 1.65600 1.05329 1.18478 1.21293 0.99565 0.89600 0.88158 1.21622 1.01524 0.91653 0.99475 1.18908 0.95014 0.93790 0.93321 1.21638 1.43886 0.92533 1.00062 0.91927 1.25987 0.94780 1.04281 0.94875 1.70093 1.45540 1.34836 1.06810 0.85495 0.79011 0.78676 0.77828 1.19153 1.20926 1.19182 1.22358 0.95216 0.94963 0.83712 0.85324 1.22882 0.95650 1.02064 0.97143 1.22325 0.96526 1.01527 0.94235 1.21604 0.95164 0.98949 0.95324 0.93002 1.21859 1.00308 0.98914 0.98575 1.22504 0.98577 1.01126 0.94274 0.93372 0.91145 0.93296 0.91129 0.92488 0.87415 0.85681 0.75201 0.92193 0.92413 0.91915 0.91758 0.98584 0.98661 0.92760 0.92356 0.90097 0.91854 0.89366 0.91301 0.92180 0.93156 0.90601 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.40 -10.12 7.17 -126.31 -0.91 -11.03 16 3 C 0.05 0.84 6.24 71.98 0.45 1.28 16 4 C 0.09 1.46 5.61 86.38 0.48 1.94 16 5 N -0.57 -11.61 2.50 -793.41 -1.98 -13.59 16 6 C 0.52 14.27 6.60 87.27 0.58 14.85 16 7 O -0.54 -16.50 12.87 -3.24 -0.04 -16.54 16 8 C 0.50 15.72 6.97 87.27 0.61 16.33 16 9 O -0.51 -16.98 10.87 19.44 0.21 -16.77 16 10 N -0.70 -22.50 5.55 -464.42 -2.58 -25.07 16 11 C 0.14 5.01 5.67 86.38 0.49 5.50 16 12 C -0.10 -4.27 5.27 30.59 0.16 -4.10 16 13 C 0.03 1.45 4.97 29.85 0.15 1.59 16 14 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 15 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 17 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 18 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 C 0.14 2.17 3.33 46.07 0.15 2.32 16 23 H 0.13 1.15 7.89 -2.38 -0.02 1.13 16 24 C -0.14 -2.28 6.26 31.89 0.20 -2.08 16 25 C -0.11 -1.45 6.36 31.67 0.20 -1.25 16 26 C -0.09 -1.44 3.50 -10.07 -0.04 -1.47 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 C -0.14 -1.57 8.85 71.98 0.64 -0.93 16 29 C -0.13 -2.24 5.70 31.32 0.18 -2.06 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 2.47 5.18 -5.55 -0.03 2.44 16 36 H 0.13 1.11 7.98 -2.39 -0.02 1.09 16 37 H 0.41 12.36 7.95 -92.71 -0.74 11.62 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H -0.01 -0.29 8.14 -2.39 -0.02 -0.30 16 44 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 45 H 0.06 1.37 6.00 -2.39 -0.01 1.36 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.09 0.80 7.83 -2.39 -0.02 0.78 16 49 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 50 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 52 H 0.08 1.11 7.67 -2.39 -0.02 1.09 16 53 H 0.04 1.14 6.04 -2.39 -0.01 1.13 16 Total: -1.00 -70.66 415.00 3.34 -67.32 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.13 Total: 22.63 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.20 Total: 3.44 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -4.28 Total: -95.58 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.74 Total: -44.34 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.66 3.34 -67.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343155578.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.801 kcal (2) G-P(sol) polarization free energy of solvation -70.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds