Wall clock time and date at job start Tue Mar 31 2020 23:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99924 * 2 1 4 4 C 1.52998 * 109.46781 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00440 * 4 3 2 6 6 C 1.34775 * 119.99952 * 83.19613 * 5 4 3 7 7 O 1.21350 * 119.99678 * 184.02371 * 6 5 4 8 8 C 1.49446 * 120.00527 * 4.01778 * 6 5 4 9 9 O 1.21352 * 119.99845 * 354.81137 * 8 6 5 10 10 N 1.34777 * 120.00278 * 174.80470 * 8 6 5 11 11 C 1.46493 * 119.99977 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.47241 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47462 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47287 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00070 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00366 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99745 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00554 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46914 * 59.99539 * 18 16 14 20 20 H 1.48496 * 109.47261 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46737 * 299.99650 * 18 16 14 22 22 C 1.46499 * 119.99654 * 263.19166 * 5 4 3 23 23 H 1.09000 * 110.02004 * 0.58462 * 22 5 4 24 24 C 1.53872 * 110.03172 * 121.97690 * 22 5 4 25 25 C 1.54270 * 106.60099 * 119.28205 * 24 22 5 26 26 C 1.54880 * 104.19312 * 23.61132 * 25 24 22 27 27 H 1.09001 * 110.76156 * 80.37501 * 26 25 24 28 28 C 1.53000 * 110.75721 * 203.74155 * 26 25 24 29 29 C 1.54268 * 110.02997 * 239.19181 * 22 5 4 30 30 H 1.08997 * 109.47072 * 59.99802 * 1 2 3 31 31 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47155 * 299.99724 * 1 2 3 33 33 H 1.09003 * 109.47014 * 60.00455 * 3 2 1 34 34 H 1.08991 * 109.46894 * 300.00231 * 3 2 1 35 35 H 1.08997 * 109.47556 * 305.00125 * 4 3 2 36 36 H 1.09011 * 109.46761 * 185.00159 * 4 3 2 37 37 H 0.96995 * 119.99758 * 0.02562 * 10 8 6 38 38 H 1.08999 * 109.47398 * 60.00200 * 11 10 8 39 39 H 1.09003 * 109.47134 * 300.00246 * 11 10 8 40 40 H 1.09009 * 109.46794 * 60.00371 * 12 11 10 41 41 H 1.08991 * 109.47647 * 300.00310 * 12 11 10 42 42 H 1.08999 * 109.46472 * 60.00430 * 13 12 11 43 43 H 1.09003 * 109.47329 * 300.00477 * 13 12 11 44 44 H 0.96997 * 120.00098 * 180.02562 * 17 16 14 45 45 H 1.09002 * 110.03311 * 238.57283 * 24 22 5 46 46 H 1.09005 * 110.02911 * 359.97438 * 24 22 5 47 47 H 1.09001 * 110.48300 * 142.29051 * 25 24 22 48 48 H 1.09000 * 110.48496 * 264.79748 * 25 24 22 49 49 H 1.09006 * 109.46890 * 58.54532 * 28 26 25 50 50 H 1.08995 * 109.47556 * 178.54578 * 28 26 25 51 51 H 1.09002 * 109.47282 * 298.54702 * 28 26 25 52 52 H 1.08997 * 110.48796 * 335.78455 * 29 22 5 53 53 H 1.08995 * 110.48519 * 98.43273 * 29 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1312 1.3165 -2.3583 7 8 4.4257 0.7917 -3.4121 8 6 3.9400 2.7970 -2.2886 9 8 3.5541 3.3111 -1.2593 10 7 4.1962 3.5613 -3.3687 11 6 4.0092 5.0126 -3.3001 12 6 4.3664 5.6372 -4.6503 13 6 4.1705 7.1530 -4.5789 14 6 4.5217 7.7681 -5.9091 15 1 4.8521 7.1407 -6.7238 16 6 4.4224 9.1319 -6.0857 17 7 4.0206 9.8959 -5.0934 18 14 4.8584 9.8945 -7.7342 19 1 3.9777 9.3310 -8.7887 20 1 4.6682 11.3656 -7.6649 21 1 6.2756 9.5930 -8.0597 22 6 4.2498 -0.8745 -1.2986 23 1 4.0635 -1.3223 -0.3224 24 6 3.3636 -1.5442 -2.3634 25 6 4.3183 -2.1742 -3.3986 26 6 5.6399 -2.3832 -2.6185 27 1 5.5905 -3.2859 -2.0096 28 6 6.8319 -2.4379 -3.5761 29 6 5.7124 -1.1208 -1.7226 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8901 34 1 1.6886 1.8463 -0.8899 35 1 3.8508 0.5685 0.8426 36 1 3.9785 2.1766 0.0903 37 1 4.5043 3.1503 -4.1915 38 1 4.6554 5.4260 -2.5259 39 1 2.9689 5.2340 -3.0616 40 1 3.7197 5.2238 -5.4244 41 1 5.4064 5.4158 -4.8894 42 1 4.8169 7.5667 -3.8049 43 1 3.1302 7.3741 -4.3401 44 1 3.9503 10.8553 -5.2178 45 1 2.7478 -2.3176 -1.9042 46 1 2.7300 -0.7990 -2.8444 47 1 3.9260 -3.1295 -3.7475 48 1 4.4716 -1.4963 -4.2383 49 1 6.8800 -1.5122 -4.1496 50 1 7.7520 -2.5594 -3.0045 51 1 6.7130 -3.2811 -4.2566 52 1 6.0932 -0.2718 -2.2902 53 1 6.3366 -1.3076 -0.8488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343155580.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:18 Heat of formation + Delta-G solvation = -146.727389 kcal Electronic energy + Delta-G solvation = -30923.481231 eV Core-core repulsion = 26794.156395 eV Total energy + Delta-G solvation = -4129.324836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.16683 -40.22942 -38.88659 -38.34029 -37.29613 -36.13075 -35.13025 -33.03722 -32.01891 -30.54724 -29.39452 -28.79638 -27.16172 -26.59960 -25.46443 -24.52868 -23.41702 -22.38477 -21.84847 -20.89858 -20.23465 -18.78974 -18.51412 -17.83681 -17.37025 -17.27028 -16.93481 -16.74840 -16.58655 -16.40326 -16.17648 -15.89657 -15.49842 -15.17575 -14.99597 -14.72111 -14.29752 -14.17331 -14.02759 -13.81396 -13.72307 -13.53614 -13.52299 -12.96972 -12.86911 -12.73170 -12.60549 -12.51917 -12.44431 -12.37967 -12.24660 -12.06968 -11.77825 -11.70694 -11.54248 -11.51184 -11.35653 -11.30733 -11.24475 -10.64087 -10.55057 -10.33317 -10.26300 -9.73293 -8.20312 -6.31275 0.36315 1.29784 1.41364 1.43743 1.51686 2.12510 2.38810 2.44970 2.87500 3.13516 3.27675 3.65937 3.72537 3.92064 4.07936 4.12628 4.15213 4.17584 4.35165 4.37022 4.44613 4.51047 4.51897 4.54798 4.59605 4.62467 4.67242 4.73419 4.76001 4.78743 4.83961 4.90216 4.90755 4.97664 5.04795 5.07265 5.13688 5.16959 5.25182 5.30077 5.35152 5.37252 5.50318 5.59416 5.68125 5.69765 5.83428 5.94273 6.17248 6.22545 6.28222 6.71711 6.85394 6.95250 7.38092 8.91393 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.002332 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.838515 B =12005.159142 C =13526.710372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.056 3.944 4 C 0.098 3.902 5 N -0.566 5.566 6 C 0.505 3.495 7 O -0.525 6.525 8 C 0.497 3.503 9 O -0.535 6.535 10 N -0.688 5.688 11 C 0.130 3.870 12 C -0.106 4.106 13 C 0.027 3.973 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.267 1.267 22 C 0.148 3.852 23 H 0.116 0.884 24 C -0.114 4.114 25 C -0.113 4.113 26 C -0.087 4.087 27 H 0.092 0.908 28 C -0.140 4.140 29 C -0.128 4.128 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.417 0.583 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.065 0.935 42 H -0.003 1.003 43 H -0.004 1.004 44 H 0.264 0.736 45 H 0.077 0.923 46 H 0.041 0.959 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.039 0.961 50 H 0.060 0.940 51 H 0.061 0.939 52 H 0.054 0.946 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 -28.370 11.884 30.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.022 4.022 4 C -0.024 4.024 5 N -0.298 5.298 6 C 0.287 3.713 7 O -0.401 6.401 8 C 0.278 3.722 9 O -0.414 6.414 10 N -0.340 5.340 11 C 0.007 3.993 12 C -0.144 4.144 13 C -0.011 4.011 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.191 1.191 22 C 0.046 3.954 23 H 0.134 0.866 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.105 4.105 27 H 0.110 0.890 28 C -0.198 4.198 29 C -0.167 4.167 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.073 0.927 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.013 -28.266 12.111 30.768 hybrid contribution -0.233 1.292 -1.168 1.757 sum -1.246 -26.974 10.943 29.136 Atomic orbital electron populations 1.22838 0.80249 1.03576 1.00102 1.87830 1.20647 1.27942 1.95486 1.22875 0.94195 0.84521 1.00606 1.22360 0.92696 1.01827 0.85486 1.47982 1.63406 1.08738 1.09679 1.19961 0.79269 0.87218 0.84832 1.90741 1.46764 1.73560 1.29062 1.20487 0.79004 0.88575 0.84126 1.90631 1.46050 1.75166 1.29510 1.45914 1.65163 1.08053 1.14881 1.21434 1.01327 0.77560 0.98974 1.21634 1.01516 0.96417 0.94821 1.18912 0.95380 0.90941 0.95860 1.21652 1.44879 0.92809 0.98857 0.91888 1.25968 0.95082 0.98100 1.00673 1.70088 1.48244 1.05332 1.33639 0.85515 0.79183 0.77025 0.79423 1.19212 1.20984 1.19137 1.22044 0.94860 0.77481 1.01032 0.86647 1.22263 0.97624 0.99245 0.96145 1.22330 0.95042 0.99872 0.97794 1.22019 0.94598 0.97575 0.96324 0.88951 1.21710 0.97672 1.01312 0.99087 1.22818 0.95383 0.98499 0.99968 0.95050 0.88238 0.93110 0.91035 0.95242 0.87386 0.86312 0.74652 0.91574 0.91885 0.91768 0.91588 0.98471 0.98590 0.92752 0.90393 0.94002 0.91207 0.92974 0.94214 0.92051 0.92045 0.92711 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -7.58 10.65 -148.98 -1.59 -9.17 16 3 C 0.06 1.10 5.70 71.98 0.41 1.51 16 4 C 0.10 1.82 5.38 86.38 0.46 2.28 16 5 N -0.57 -11.91 2.40 -795.38 -1.91 -13.81 16 6 C 0.51 13.20 6.50 87.27 0.57 13.77 16 7 O -0.52 -15.06 12.44 -3.25 -0.04 -15.10 16 8 C 0.50 14.29 7.64 87.27 0.67 14.96 16 9 O -0.53 -16.38 11.96 -3.25 -0.04 -16.41 16 10 N -0.69 -20.08 5.55 -464.43 -2.58 -22.66 16 11 C 0.13 4.38 5.67 86.38 0.49 4.87 16 12 C -0.11 -4.08 5.27 30.59 0.16 -3.92 16 13 C 0.03 1.37 4.97 29.85 0.15 1.52 16 14 C -0.54 -30.36 9.11 25.60 0.23 -30.12 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 18 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 C 0.15 2.59 3.35 45.72 0.15 2.74 16 23 H 0.12 1.58 7.75 -2.39 -0.02 1.56 16 24 C -0.11 -2.18 5.75 31.32 0.18 -2.00 16 25 C -0.11 -2.06 5.84 31.67 0.18 -1.88 16 26 C -0.09 -1.32 3.49 -9.48 -0.03 -1.35 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 C -0.14 -2.18 9.27 71.98 0.67 -1.51 16 29 C -0.13 -2.19 5.55 31.70 0.18 -2.02 16 30 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.03 0.73 7.20 -2.39 -0.02 0.71 16 35 H 0.11 1.43 7.80 -2.39 -0.02 1.41 16 36 H 0.12 2.54 5.37 -2.45 -0.01 2.52 16 37 H 0.42 11.21 7.96 -92.71 -0.74 10.47 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 45 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.04 1.03 6.92 -2.38 -0.02 1.02 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.05 1.24 7.13 -2.39 -0.02 1.22 16 49 H 0.04 0.76 8.12 -2.38 -0.02 0.74 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.05 1.24 6.25 -2.39 -0.01 1.22 16 53 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -66.11 417.93 2.49 -63.62 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.14 Total: 22.84 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.18 Total: 0.96 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -4.20 Total: -92.61 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.67 Total: -40.68 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -66.11 2.49 -63.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343155580.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.110 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds