Wall clock time and date at job start Tue Mar 31 2020 23:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99780 * 2 1 4 4 C 1.53003 * 109.46982 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47364 * 64.99733 * 4 3 2 6 6 C 1.34773 * 119.99782 * 83.14542 * 5 4 3 7 7 O 1.21352 * 119.99809 * 184.07528 * 6 5 4 8 8 C 1.49455 * 120.00227 * 4.06860 * 6 5 4 9 9 O 1.21347 * 119.99516 * 354.27013 * 8 6 5 10 10 N 1.34773 * 120.00104 * 174.26569 * 8 6 5 11 11 C 1.46498 * 119.99950 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.46968 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47222 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47513 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99771 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00101 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00173 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99927 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47331 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47409 * 119.99891 * 18 16 14 21 21 H 1.48500 * 109.47384 * 239.99960 * 18 16 14 22 22 C 1.46500 * 120.00200 * 263.14776 * 5 4 3 23 23 H 1.09006 * 110.66927 * 359.29896 * 22 5 4 24 24 C 1.54890 * 110.75475 * 236.06417 * 22 5 4 25 25 C 1.54468 * 104.09801 * 203.89224 * 24 22 5 26 26 C 1.53873 * 106.68495 * 23.33969 * 25 24 22 27 27 H 1.08998 * 110.03286 * 240.87240 * 26 25 24 28 28 C 1.53002 * 110.06958 * 119.46602 * 26 25 24 29 29 C 1.54261 * 106.59884 * 0.16032 * 26 25 24 30 30 H 1.09000 * 109.47387 * 299.99785 * 1 2 3 31 31 H 1.09003 * 109.47273 * 60.00164 * 1 2 3 32 32 H 1.09003 * 109.47347 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47068 * 60.00233 * 3 2 1 34 34 H 1.08999 * 109.47292 * 299.99928 * 3 2 1 35 35 H 1.09004 * 109.46850 * 304.99548 * 4 3 2 36 36 H 1.09000 * 109.46958 * 184.99994 * 4 3 2 37 37 H 0.96998 * 120.00171 * 359.97438 * 10 8 6 38 38 H 1.09000 * 109.47083 * 60.00059 * 11 10 8 39 39 H 1.09003 * 109.47272 * 299.99770 * 11 10 8 40 40 H 1.09000 * 109.47136 * 60.00133 * 12 11 10 41 41 H 1.09005 * 109.47389 * 299.99674 * 12 11 10 42 42 H 1.09005 * 109.46597 * 300.00067 * 13 12 11 43 43 H 1.09001 * 109.47348 * 59.99534 * 13 12 11 44 44 H 0.97000 * 119.99975 * 180.02562 * 17 16 14 45 45 H 1.08998 * 110.48415 * 322.42208 * 24 22 5 46 46 H 1.08997 * 110.48357 * 85.06612 * 24 22 5 47 47 H 1.09008 * 109.85614 * 264.10166 * 25 24 22 48 48 H 1.09004 * 110.16095 * 142.74794 * 25 24 22 49 49 H 1.09005 * 109.47246 * 302.80792 * 28 26 25 50 50 H 1.08994 * 109.47479 * 62.81048 * 28 26 25 51 51 H 1.08999 * 109.46925 * 182.81143 * 28 26 25 52 52 H 1.09008 * 110.48504 * 217.70925 * 29 26 25 53 53 H 1.09001 * 110.48956 * 95.07297 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1284 1.3170 -2.3603 7 8 4.4212 0.7924 -3.4147 8 6 3.9371 2.7976 -2.2900 9 8 3.5434 3.3103 -1.2630 10 7 4.2018 3.5631 -3.3671 11 6 4.0147 5.0145 -3.2980 12 6 4.3837 5.6409 -4.6443 13 6 4.1890 7.1567 -4.5720 14 6 4.5518 7.7737 -5.8981 15 1 4.8880 7.1473 -6.7111 16 6 4.4544 9.1378 -6.0736 17 7 4.0444 9.9005 -5.0837 18 14 4.9048 9.9026 -7.7172 19 1 5.3326 8.8367 -8.6585 20 1 3.7237 10.6095 -8.2745 21 1 6.0155 10.8694 -7.5256 22 6 4.2499 -0.8739 -1.3009 23 1 4.0901 -1.3290 -0.3233 24 6 5.6908 -1.1415 -1.8021 25 6 5.6297 -2.5744 -2.3757 26 6 4.1585 -2.8428 -2.7381 27 1 3.7802 -3.6874 -2.1623 28 6 4.0307 -3.1304 -4.2354 29 6 3.3753 -1.5637 -2.3770 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8514 0.5683 0.8410 36 1 3.9785 2.1766 0.0889 37 1 4.5168 3.1533 -4.1879 38 1 4.6551 5.4266 -2.5182 39 1 2.9727 5.2360 -3.0672 40 1 3.7436 5.2288 -5.4244 41 1 5.4258 5.4194 -4.8747 42 1 3.1469 7.3785 -4.3414 43 1 4.8293 7.5686 -3.7919 44 1 3.9756 10.8601 -5.2073 45 1 5.9612 -0.4307 -2.5830 46 1 6.3985 -1.0883 -0.9748 47 1 5.9653 -3.2888 -1.6239 48 1 6.2534 -2.6494 -3.2665 49 1 4.4339 -2.2912 -4.8024 50 1 4.5869 -4.0351 -4.4804 51 1 2.9801 -3.2696 -4.4902 52 1 2.3973 -1.8179 -1.9683 53 1 3.2691 -0.9217 -3.2514 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343155582.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:22 Heat of formation + Delta-G solvation = -147.668955 kcal Electronic energy + Delta-G solvation = -30840.647753 eV Core-core repulsion = 26711.282088 eV Total energy + Delta-G solvation = -4129.365665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.16276 -40.22039 -38.89811 -38.44264 -37.30816 -36.17287 -35.13474 -33.03841 -32.01167 -30.50072 -29.45036 -28.78407 -27.16225 -26.60342 -25.42318 -24.55208 -23.41002 -22.38862 -22.13266 -20.60487 -20.32965 -18.81141 -18.52582 -17.83369 -17.38692 -17.25980 -16.95107 -16.73891 -16.55735 -16.42228 -16.22035 -15.99308 -15.50660 -15.16324 -14.88465 -14.67041 -14.38526 -14.29841 -13.98975 -13.79835 -13.72449 -13.54129 -13.32522 -13.26024 -12.85990 -12.77973 -12.67880 -12.57969 -12.48902 -12.37753 -12.26511 -12.10144 -11.76443 -11.70666 -11.54585 -11.52715 -11.33438 -11.21170 -11.17192 -10.63989 -10.56203 -10.31431 -10.25640 -9.73023 -8.20513 -6.31160 0.33942 1.27974 1.40830 1.41626 1.54421 2.10012 2.37779 2.43899 2.87305 3.13555 3.26143 3.65841 3.75978 3.90138 4.08219 4.11261 4.15365 4.18051 4.33613 4.37240 4.43495 4.50033 4.51508 4.52302 4.56511 4.59611 4.64400 4.73669 4.75693 4.79508 4.84213 4.91181 4.93757 4.97453 5.01249 5.07838 5.14120 5.17359 5.18882 5.29699 5.31593 5.41055 5.51048 5.59394 5.67798 5.70065 5.83775 5.93778 6.16888 6.22691 6.27393 6.69279 6.85898 6.93221 7.38282 8.91579 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.002244 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.397998 B =12472.014034 C =13689.098837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.400 6.400 3 C 0.055 3.945 4 C 0.099 3.901 5 N -0.564 5.564 6 C 0.506 3.494 7 O -0.528 6.528 8 C 0.497 3.503 9 O -0.534 6.534 10 N -0.688 5.688 11 C 0.130 3.870 12 C -0.106 4.106 13 C 0.026 3.974 14 C -0.541 4.541 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.147 3.853 23 H 0.118 0.882 24 C -0.139 4.139 25 C -0.110 4.110 26 C -0.089 4.089 27 H 0.085 0.915 28 C -0.141 4.141 29 C -0.128 4.128 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.030 0.970 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.417 0.583 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.065 0.935 42 H -0.004 1.004 43 H -0.003 1.003 44 H 0.263 0.737 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.040 0.960 50 H 0.064 0.936 51 H 0.051 0.949 52 H 0.065 0.935 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 -28.557 11.895 30.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.022 4.022 4 C -0.023 4.023 5 N -0.295 5.295 6 C 0.288 3.712 7 O -0.406 6.406 8 C 0.279 3.721 9 O -0.412 6.412 10 N -0.340 5.340 11 C 0.007 3.993 12 C -0.144 4.144 13 C -0.012 4.012 14 C -0.579 4.579 15 H 0.081 0.919 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.205 1.205 22 C 0.045 3.955 23 H 0.136 0.864 24 C -0.177 4.177 25 C -0.148 4.148 26 C -0.108 4.108 27 H 0.103 0.897 28 C -0.199 4.199 29 C -0.166 4.166 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.254 0.746 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.014 0.986 43 H 0.016 0.984 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.070 0.930 52 H 0.084 0.916 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.778 -28.463 12.119 30.986 hybrid contribution -0.184 1.246 -1.162 1.714 sum -1.962 -27.217 10.957 29.405 Atomic orbital electron populations 1.22840 0.80234 1.03567 1.00140 1.87829 1.20664 1.27964 1.95489 1.22881 0.94123 0.84526 1.00699 1.22367 0.92784 1.01820 0.85346 1.47796 1.63221 1.08753 1.09687 1.20010 0.79153 0.87325 0.84686 1.90709 1.47061 1.73528 1.29258 1.20434 0.79103 0.88454 0.84135 1.90634 1.45876 1.75181 1.29550 1.45915 1.64853 1.08062 1.15156 1.21443 1.01352 0.77499 0.99006 1.21636 1.01499 0.96396 0.94871 1.18925 0.95415 0.90953 0.95883 1.21700 1.44363 0.92759 0.99095 0.91913 1.25965 0.95158 0.98150 1.00623 1.70097 1.48259 1.05320 1.33630 0.85409 0.77878 0.78448 0.79370 1.18529 1.20525 1.20465 1.22377 0.94993 0.77298 1.00851 0.86381 1.22762 0.95956 0.98069 1.00908 1.22142 0.96160 0.95533 1.00989 1.21646 0.95232 0.97137 0.96785 0.89685 1.21835 1.01453 1.01175 0.95387 1.22727 0.98403 0.96704 0.98773 0.93088 0.94994 0.88275 0.90943 0.95148 0.87358 0.86235 0.74640 0.91534 0.91834 0.91756 0.91582 0.98561 0.98439 0.92773 0.92304 0.90456 0.90052 0.91931 0.94073 0.91694 0.92985 0.91587 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -7.59 10.65 -148.98 -1.59 -9.18 16 3 C 0.06 1.08 5.70 71.98 0.41 1.49 16 4 C 0.10 1.82 5.39 86.38 0.47 2.29 16 5 N -0.56 -11.94 2.51 -792.23 -1.99 -13.93 16 6 C 0.51 13.28 6.95 87.27 0.61 13.89 16 7 O -0.53 -15.36 12.57 -3.25 -0.04 -15.40 16 8 C 0.50 14.25 7.64 87.27 0.67 14.91 16 9 O -0.53 -16.22 11.94 -3.24 -0.04 -16.26 16 10 N -0.69 -19.97 5.55 -464.41 -2.58 -22.54 16 11 C 0.13 4.35 5.67 86.38 0.49 4.84 16 12 C -0.11 -4.07 5.27 30.59 0.16 -3.91 16 13 C 0.03 1.32 4.97 29.85 0.15 1.47 16 14 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 16 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 17 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 18 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 C 0.15 2.63 3.38 46.28 0.16 2.79 16 23 H 0.12 1.68 7.78 -2.38 -0.02 1.67 16 24 C -0.14 -2.45 6.21 31.74 0.20 -2.25 16 25 C -0.11 -1.62 6.46 31.39 0.20 -1.41 16 26 C -0.09 -1.38 3.50 -10.07 -0.04 -1.41 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 C -0.14 -2.30 8.84 71.98 0.64 -1.66 16 29 C -0.13 -2.49 5.73 31.66 0.18 -2.30 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.03 0.75 7.18 -2.39 -0.02 0.73 16 35 H 0.11 1.44 7.81 -2.38 -0.02 1.42 16 36 H 0.12 2.53 5.39 -2.41 -0.01 2.51 16 37 H 0.42 11.15 7.96 -92.71 -0.74 10.41 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 43 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 45 H 0.06 1.38 5.98 -2.39 -0.01 1.37 16 46 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 48 H 0.06 0.98 7.67 -2.39 -0.02 0.96 16 49 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 50 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 53 H 0.06 1.57 5.53 -2.39 -0.01 1.56 16 Total: -1.00 -65.98 418.40 2.46 -63.52 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.15 Total: 23.01 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 6.23 Total: 0.89 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -4.28 Total: -92.48 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.67 Total: -40.83 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.98 2.46 -63.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343155582.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.146 kcal (2) G-P(sol) polarization free energy of solvation -65.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds