Wall clock time and date at job start Tue Mar 31 2020 23:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00273 * 2 1 4 4 C 1.52995 * 109.47337 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47041 * 65.00007 * 4 3 2 6 6 C 1.34773 * 120.00679 * 268.74624 * 5 4 3 7 7 O 1.21343 * 120.00759 * 184.09465 * 6 5 4 8 8 C 1.49452 * 119.99613 * 4.09675 * 6 5 4 9 9 O 1.21356 * 120.00271 * 356.37575 * 8 6 5 10 10 N 1.34771 * 120.00107 * 176.37395 * 8 6 5 11 11 C 1.46501 * 120.00120 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47073 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.46980 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47011 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00021 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00075 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00273 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 119.99692 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47317 * 89.99598 * 18 16 14 20 20 H 1.48498 * 109.47065 * 209.99805 * 18 16 14 21 21 H 1.48504 * 109.47578 * 329.99730 * 18 16 14 22 22 C 1.46508 * 119.99732 * 88.74721 * 5 4 3 23 23 H 1.08999 * 110.01825 * 352.09292 * 22 5 4 24 24 C 1.53875 * 110.03289 * 230.70280 * 22 5 4 25 25 C 1.54264 * 106.59704 * 240.71546 * 24 22 5 26 26 C 1.54891 * 104.19654 * 23.61084 * 25 24 22 27 27 H 1.09002 * 110.75755 * 80.37188 * 26 25 24 28 28 C 1.52999 * 110.75191 * 203.55881 * 26 25 24 29 29 C 1.54266 * 110.03068 * 113.48336 * 22 5 4 30 30 H 1.09001 * 109.47042 * 59.99354 * 1 2 3 31 31 H 1.08998 * 109.47440 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46929 * 300.00113 * 1 2 3 33 33 H 1.09008 * 109.46944 * 59.99916 * 3 2 1 34 34 H 1.08998 * 109.47166 * 300.00325 * 3 2 1 35 35 H 1.09002 * 109.47570 * 305.00616 * 4 3 2 36 36 H 1.08998 * 109.47411 * 185.00320 * 4 3 2 37 37 H 0.97003 * 120.00382 * 0.02562 * 10 8 6 38 38 H 1.09003 * 109.46927 * 300.00059 * 11 10 8 39 39 H 1.08996 * 109.47140 * 59.99996 * 11 10 8 40 40 H 1.09003 * 109.47113 * 299.99725 * 12 11 10 41 41 H 1.08997 * 109.47482 * 60.00413 * 12 11 10 42 42 H 1.09003 * 109.47038 * 299.99850 * 13 12 11 43 43 H 1.08996 * 109.47122 * 59.99844 * 13 12 11 44 44 H 0.96999 * 120.00119 * 180.02562 * 17 16 14 45 45 H 1.09004 * 110.02691 * 359.97438 * 24 22 5 46 46 H 1.09002 * 110.03238 * 121.42685 * 24 22 5 47 47 H 1.09001 * 110.48509 * 142.28628 * 25 24 22 48 48 H 1.08997 * 110.48671 * 264.92646 * 25 24 22 49 49 H 1.08997 * 109.47588 * 58.54694 * 28 26 25 50 50 H 1.09005 * 109.46758 * 178.54668 * 28 26 25 51 51 H 1.08997 * 109.47320 * 298.54491 * 28 26 25 52 52 H 1.09003 * 110.48204 * 214.35442 * 29 22 5 53 53 H 1.08993 * 110.48616 * 336.99702 * 29 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1202 -0.7740 -1.3257 7 8 4.5563 -1.2819 -2.3377 8 6 3.7422 -1.6322 -0.1620 9 8 3.3682 -1.1208 0.8731 10 7 3.8164 -2.9742 -0.2621 11 6 3.4464 -3.8154 0.8788 12 6 3.6204 -5.2886 0.5038 13 6 3.2345 -6.1671 1.6956 14 6 3.4053 -7.6181 1.3261 15 1 3.7545 -7.8868 0.3400 16 6 3.1167 -8.6027 2.2472 17 7 3.2652 -9.8690 1.9246 18 14 2.5133 -8.1380 3.9528 19 1 1.0307 -8.0546 3.9478 20 1 2.9478 -9.1688 4.9295 21 1 3.0818 -6.8210 4.3373 22 6 4.2619 1.3978 -2.4213 23 1 3.9616 2.4276 -2.2279 24 6 3.5147 0.8531 -3.6512 25 6 4.5911 0.4825 -4.6923 26 6 5.8689 0.2453 -3.8496 27 1 5.8579 -0.7488 -3.4026 28 6 7.1244 0.4405 -4.7020 29 6 5.7664 1.3402 -2.7571 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8508 0.5684 0.8426 36 1 3.9785 2.1765 0.0903 37 1 4.1156 -3.3831 -1.0893 38 1 4.0877 -3.5788 1.7278 39 1 2.4063 -3.6285 1.1458 40 1 2.9793 -5.5255 -0.3453 41 1 4.6606 -5.4752 0.2371 42 1 3.8759 -5.9301 2.5445 43 1 2.1944 -5.9806 1.9628 44 1 3.0618 -10.5616 2.5725 45 1 2.9403 -0.0319 -3.3774 46 1 2.8524 1.6188 -4.0552 47 1 4.3106 -0.4267 -5.2240 48 1 4.7430 1.3037 -5.3928 49 1 7.1312 1.4499 -5.1131 50 1 8.0098 0.2942 -4.0833 51 1 7.1267 -0.2836 -5.5166 52 1 6.1076 2.3000 -3.1451 53 1 6.3432 1.0568 -1.8767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343155584.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:26 Heat of formation + Delta-G solvation = -129.096255 kcal Electronic energy + Delta-G solvation = -31477.100789 eV Core-core repulsion = 27348.540497 eV Total energy + Delta-G solvation = -4128.560292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.08215 -40.13030 -38.79557 -38.08285 -37.17543 -36.08571 -35.03156 -33.22863 -31.94983 -30.49088 -29.48066 -28.99136 -27.21337 -26.36202 -25.49402 -24.20503 -23.35717 -22.25417 -21.78228 -20.94024 -19.94978 -18.96770 -18.59971 -17.75151 -17.39810 -17.23230 -16.95974 -16.63171 -16.38342 -16.27858 -16.10574 -15.67911 -15.48883 -15.09389 -15.03174 -14.77668 -14.73483 -14.16104 -13.80000 -13.70163 -13.60478 -13.47379 -13.34007 -13.12407 -12.83120 -12.73856 -12.66142 -12.50991 -12.46241 -12.09096 -11.95361 -11.85977 -11.81797 -11.74046 -11.59168 -11.45843 -11.34435 -11.32465 -11.05619 -10.75598 -10.49099 -10.09771 -10.01344 -9.61086 -8.28578 -6.33008 0.57461 1.38055 1.39637 1.44994 1.51933 2.35229 2.37545 2.53259 3.02609 3.07066 3.43434 3.68232 3.73900 3.95776 4.07760 4.20122 4.21589 4.26238 4.40181 4.41904 4.46144 4.50531 4.51381 4.53715 4.58240 4.62704 4.70276 4.74896 4.82124 4.85605 4.87205 4.89397 4.94366 4.99179 5.02232 5.05590 5.08376 5.14956 5.27399 5.38668 5.42010 5.43985 5.49673 5.55988 5.58873 5.65815 5.85763 6.09386 6.28327 6.39480 6.39614 6.75194 6.93059 7.19239 7.31687 8.88191 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002640 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.035492 B =10601.751751 C =12010.785221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.399 6.399 3 C 0.049 3.951 4 C 0.083 3.917 5 N -0.569 5.569 6 C 0.510 3.490 7 O -0.524 6.524 8 C 0.501 3.499 9 O -0.510 6.510 10 N -0.700 5.700 11 C 0.133 3.867 12 C -0.103 4.103 13 C -0.009 4.009 14 C -0.533 4.533 15 H 0.033 0.967 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.951 3.049 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.244 1.244 22 C 0.138 3.862 23 H 0.124 0.876 24 C -0.124 4.124 25 C -0.104 4.104 26 C -0.113 4.113 27 H 0.087 0.913 28 C -0.140 4.140 29 C -0.122 4.122 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.412 0.588 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.266 0.734 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.045 0.955 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.047 0.953 51 H 0.047 0.953 52 H 0.094 0.906 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 33.702 -9.035 34.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.318 6.318 3 C -0.028 4.028 4 C -0.039 4.039 5 N -0.302 5.302 6 C 0.293 3.707 7 O -0.402 6.402 8 C 0.282 3.718 9 O -0.386 6.386 10 N -0.353 5.353 11 C 0.010 3.990 12 C -0.141 4.141 13 C -0.047 4.047 14 C -0.571 4.571 15 H 0.052 0.948 16 C -0.194 4.194 17 N -0.593 5.593 18 Si 0.774 3.226 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.167 1.167 22 C 0.036 3.964 23 H 0.142 0.858 24 C -0.163 4.163 25 C -0.141 4.141 26 C -0.132 4.132 27 H 0.105 0.895 28 C -0.198 4.198 29 C -0.160 4.160 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.248 0.752 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.067 0.933 51 H 0.066 0.934 52 H 0.113 0.887 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.292 33.495 -8.751 34.621 hybrid contribution -0.489 -0.898 0.231 1.048 sum -0.197 32.597 -8.520 33.693 Atomic orbital electron populations 1.22732 0.81097 1.02388 1.00340 1.88068 1.19794 1.28530 1.95373 1.22964 0.94013 0.84842 1.00991 1.22563 0.93201 1.01309 0.86795 1.47976 1.64012 1.04392 1.13812 1.20019 0.79038 0.84140 0.87486 1.90616 1.43938 1.73962 1.31654 1.20310 0.79211 0.83421 0.88830 1.90593 1.44814 1.72233 1.30988 1.45849 1.66211 1.05446 1.17838 1.21366 1.00531 0.89128 0.87970 1.21503 1.01566 0.91837 0.99199 1.19439 0.96772 0.93120 0.95321 1.21482 1.44309 0.91606 0.99699 0.94845 1.26032 0.95260 0.94598 1.03491 1.70070 1.51033 1.00878 1.37336 0.85647 0.79270 0.79135 0.78551 1.19166 1.21083 1.16739 1.22103 0.95561 0.94669 0.84024 0.85847 1.22396 0.98190 1.00490 0.95182 1.22209 0.94505 1.00433 0.97001 1.22545 0.94278 1.00636 0.95691 0.89547 1.21758 0.97029 1.01703 0.99281 1.22807 0.94598 0.99945 0.98621 0.93527 0.90927 0.93282 0.91226 0.92604 0.87052 0.86053 0.75236 0.91450 0.91626 0.92255 0.92109 0.95719 0.95939 0.92500 0.93722 0.89922 0.93575 0.90586 0.91744 0.93343 0.93397 0.88738 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -9.34 7.43 -126.85 -0.94 -10.28 16 3 C 0.05 0.78 6.24 71.98 0.45 1.23 16 4 C 0.08 1.30 5.58 86.38 0.48 1.78 16 5 N -0.57 -10.66 2.37 -795.38 -1.89 -12.55 16 6 C 0.51 13.00 6.55 87.27 0.57 13.58 16 7 O -0.52 -14.66 10.71 -3.22 -0.03 -14.69 16 8 C 0.50 14.51 7.04 87.27 0.61 15.12 16 9 O -0.51 -15.69 11.01 18.86 0.21 -15.48 16 10 N -0.70 -20.74 5.55 -464.41 -2.58 -23.31 16 11 C 0.13 4.32 5.67 86.38 0.49 4.81 16 12 C -0.10 -3.91 5.27 30.60 0.16 -3.75 16 13 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 14 C -0.53 -30.87 9.66 25.60 0.25 -30.62 16 15 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 16 C 0.00 0.16 5.47 84.66 0.46 0.63 16 17 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 18 Si 0.95 44.48 27.47 68.60 1.88 46.36 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 22 C 0.14 1.96 3.46 45.71 0.16 2.12 16 23 H 0.12 0.96 7.92 -2.39 -0.02 0.94 16 24 C -0.12 -2.06 5.85 31.32 0.18 -1.88 16 25 C -0.10 -1.78 6.06 31.67 0.19 -1.59 16 26 C -0.11 -2.12 2.83 -9.46 -0.03 -2.15 16 27 H 0.09 2.23 4.95 -9.78 -0.05 2.18 16 28 C -0.14 -2.21 9.28 71.98 0.67 -1.54 16 29 C -0.12 -1.79 5.66 31.71 0.18 -1.61 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.11 2.37 5.05 -12.04 -0.06 2.31 16 36 H 0.12 0.98 8.03 -2.39 -0.02 0.96 16 37 H 0.41 11.63 7.95 -92.71 -0.74 10.89 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 43 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 44 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.04 1.03 6.56 -2.38 -0.02 1.01 16 46 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 47 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 48 H 0.08 1.01 8.05 -2.39 -0.02 0.99 16 49 H 0.06 0.79 8.13 -2.39 -0.02 0.78 16 50 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.09 0.96 8.04 -2.39 -0.02 0.94 16 53 H 0.05 0.96 8.04 -2.39 -0.02 0.94 16 Total: -1.00 -71.28 408.56 3.16 -68.12 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.01 Total: 24.24 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 6.20 Total: -2.34 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -4.16 Total: -95.93 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.77 Total: -40.45 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -71.28 3.16 -68.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343155584.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.972 kcal (2) G-P(sol) polarization free energy of solvation -71.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds