Wall clock time and date at job start Tue Mar 31 2020 22:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 O 1.42904 * 109.46933 * 180.02562 * 3 2 1 5 5 C 1.42904 * 113.99838 * 179.97438 * 4 3 2 6 6 H 1.08996 * 108.44687 * 329.99157 * 5 4 3 7 7 C 1.52572 * 108.50909 * 212.30660 * 5 4 3 8 8 C 1.51033 * 109.27317 * 153.60331 * 7 5 4 9 9 C 1.53954 * 109.97083 * 92.06765 * 8 7 5 10 10 N 1.47604 * 112.13861 * 319.42044 * 9 8 7 11 11 C 1.34768 * 118.64616 * 137.84786 * 10 9 8 12 12 O 1.21358 * 120.00110 * 358.13962 * 11 10 9 13 13 C 1.49448 * 120.00349 * 178.14900 * 11 10 9 14 14 O 1.21354 * 119.99898 * 6.15610 * 13 11 10 15 15 N 1.34774 * 120.00180 * 186.16180 * 13 11 10 16 16 C 1.46501 * 120.00058 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.47201 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.47147 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.47144 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99900 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99938 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00069 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99936 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47347 * 89.99780 * 23 21 19 25 25 H 1.48500 * 109.46860 * 209.99586 * 23 21 19 26 26 H 1.48502 * 109.47348 * 329.99276 * 23 21 19 27 27 C 1.44578 * 122.71068 * 317.86328 * 10 9 8 28 28 C 1.47087 * 108.51422 * 87.68653 * 5 4 3 29 29 H 1.09000 * 109.46651 * 59.99885 * 1 2 3 30 30 H 1.08991 * 109.47200 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46913 * 300.00609 * 1 2 3 32 32 H 1.09000 * 109.47087 * 119.99802 * 2 1 3 33 33 H 1.08998 * 109.46795 * 239.99528 * 2 1 3 34 34 H 1.09000 * 109.46701 * 299.99397 * 3 2 1 35 35 H 1.08998 * 109.47623 * 60.00035 * 3 2 1 36 36 H 1.09000 * 109.49090 * 273.69825 * 7 5 4 37 37 H 1.09004 * 109.48948 * 33.77076 * 7 5 4 38 38 H 1.08999 * 109.44939 * 331.90578 * 8 7 5 39 39 H 1.09006 * 109.31398 * 212.14199 * 8 7 5 40 40 H 1.08994 * 108.94559 * 198.72877 * 9 8 7 41 41 H 1.09003 * 108.94475 * 80.10053 * 9 8 7 42 42 H 0.96999 * 120.00229 * 0.02562 * 15 13 11 43 43 H 1.08994 * 109.47593 * 300.00227 * 16 15 13 44 44 H 1.09004 * 109.47042 * 59.99943 * 16 15 13 45 45 H 1.08997 * 109.47556 * 300.00312 * 17 16 15 46 46 H 1.09006 * 109.46908 * 60.00660 * 17 16 15 47 47 H 1.09007 * 109.46972 * 299.99862 * 18 17 16 48 48 H 1.08994 * 109.47318 * 60.00242 * 18 17 16 49 49 H 0.96999 * 120.00294 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.44984 * 330.68862 * 27 10 9 51 51 H 1.09002 * 109.44874 * 210.76930 * 27 10 9 52 52 H 1.08997 * 109.33136 * 304.31782 * 28 5 4 53 53 H 1.08999 * 109.32915 * 63.96798 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0504 2.7479 -0.0012 6 1 3.3725 3.4270 -0.5183 7 6 5.3641 2.6927 -0.7750 8 6 5.6634 4.0580 -1.3472 9 6 6.5348 4.8607 -0.3642 10 7 6.1113 4.6714 1.0370 11 6 7.0584 4.5103 1.9822 12 8 8.2307 4.4890 1.6690 13 6 6.6651 4.3577 3.4159 14 8 5.4931 4.2666 3.7172 15 7 7.6121 4.3214 4.3742 16 6 7.2265 4.1724 5.7797 17 6 8.4818 4.1598 6.6543 18 6 8.0792 4.0035 8.1221 19 6 9.3156 3.9917 8.9837 20 1 10.2910 4.0857 8.5297 21 6 9.2015 3.8607 10.3515 22 7 10.2804 3.8499 11.1033 23 14 7.5144 3.6973 11.1366 24 1 7.1430 2.2618 11.2177 25 1 7.5459 4.2784 12.5028 26 1 6.5130 4.4220 10.3135 27 6 4.7222 4.6512 1.4374 28 6 4.1895 3.1979 1.3922 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.6768 1.9562 -0.8901 35 1 1.6768 1.9564 0.8899 36 1 6.1690 2.3923 -0.1042 37 1 5.2780 1.9703 -1.5868 38 1 4.7289 4.5917 -1.5206 39 1 6.1953 3.9444 -2.2919 40 1 6.4673 5.9194 -0.6145 41 1 7.5715 4.5399 -0.4670 42 1 8.5488 4.3947 4.1335 43 1 6.5882 5.0062 6.0718 44 1 6.6837 3.2362 5.9103 45 1 9.1198 3.3257 6.3622 46 1 9.0249 5.0958 6.5239 47 1 7.4410 4.8374 8.4145 48 1 7.5363 3.0674 8.2523 49 1 10.2002 3.7574 12.0655 50 1 4.1394 5.2727 0.7575 51 1 4.6312 5.0398 2.4518 52 1 3.2178 3.1543 1.8842 53 1 4.8879 2.5440 1.9144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343312636.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:38 Heat of formation + Delta-G solvation = -145.155872 kcal Electronic energy + Delta-G solvation = -30214.962117 eV Core-core repulsion = 26085.705427 eV Total energy + Delta-G solvation = -4129.256690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.22842 -40.35302 -39.54346 -38.00318 -37.07143 -35.32633 -34.92803 -34.00819 -33.29123 -32.85504 -29.46164 -28.33541 -27.11835 -25.93152 -25.80261 -24.10820 -22.52433 -22.36992 -22.16101 -21.36740 -20.58530 -19.05957 -18.70990 -18.37989 -17.73969 -17.33082 -16.88522 -16.68745 -16.57323 -16.29295 -16.23888 -15.83044 -15.64139 -15.30658 -14.95614 -14.78773 -14.59334 -14.46037 -13.98306 -13.82155 -13.73213 -13.62419 -13.61502 -13.11580 -13.03966 -12.84792 -12.76297 -12.67680 -12.45784 -12.31564 -12.04783 -11.95323 -11.89665 -11.77326 -11.71312 -11.63824 -11.57579 -11.47062 -11.33995 -10.76005 -10.52478 -10.38380 -10.25716 -9.77138 -8.28779 -6.33358 0.29596 1.26084 1.38263 1.39590 1.51522 2.05940 2.37115 2.43278 2.65634 3.06805 3.24988 3.59042 3.84027 3.93306 4.01222 4.02220 4.05457 4.11642 4.16690 4.22430 4.25826 4.38110 4.42308 4.46645 4.47603 4.58630 4.64299 4.64945 4.72917 4.82537 4.84870 4.85752 4.90706 4.92834 5.00724 5.04353 5.13495 5.15186 5.18152 5.23555 5.25725 5.32728 5.37028 5.42830 5.47669 5.54566 5.64775 5.87171 6.20042 6.27580 6.33625 6.65100 6.74923 6.89246 7.31261 8.87776 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011869 B = 0.002170 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.507087 B =12897.769917 C =14772.516600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.057 3.943 4 O -0.411 6.411 5 C 0.094 3.906 6 H 0.076 0.924 7 C -0.114 4.114 8 C -0.118 4.118 9 C 0.100 3.900 10 N -0.567 5.567 11 C 0.501 3.499 12 O -0.547 6.547 13 C 0.500 3.500 14 O -0.525 6.525 15 N -0.690 5.690 16 C 0.126 3.874 17 C -0.105 4.105 18 C -0.010 4.010 19 C -0.533 4.533 20 H 0.033 0.967 21 C 0.001 3.999 22 N -0.952 5.952 23 Si 0.951 3.049 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.243 1.243 27 C 0.088 3.912 28 C -0.141 4.141 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.416 0.584 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.026 0.974 48 H 0.023 0.977 49 H 0.266 0.734 50 H 0.104 0.896 51 H 0.118 0.882 52 H 0.079 0.921 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.772 0.170 -31.342 37.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.019 4.019 4 O -0.332 6.332 5 C 0.037 3.963 6 H 0.094 0.906 7 C -0.152 4.152 8 C -0.155 4.155 9 C -0.020 4.020 10 N -0.299 5.299 11 C 0.283 3.717 12 O -0.425 6.425 13 C 0.281 3.719 14 O -0.404 6.404 15 N -0.342 5.342 16 C 0.004 3.996 17 C -0.143 4.143 18 C -0.048 4.048 19 C -0.571 4.571 20 H 0.052 0.948 21 C -0.195 4.195 22 N -0.592 5.592 23 Si 0.774 3.226 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.166 1.166 27 C -0.034 4.034 28 C -0.180 4.180 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.253 0.747 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.045 0.955 48 H 0.041 0.959 49 H 0.075 0.925 50 H 0.122 0.878 51 H 0.135 0.865 52 H 0.098 0.902 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.847 -0.069 -31.154 37.485 hybrid contribution 0.417 -0.162 1.044 1.135 sum -20.431 -0.231 -30.110 36.388 Atomic orbital electron populations 1.21680 0.93414 1.02770 1.02520 1.21478 0.96850 0.95382 1.02526 1.22719 0.80310 0.98212 1.00691 1.87951 1.20638 1.29222 1.95375 1.21208 0.95329 0.84418 0.95299 0.90578 1.21182 0.95562 0.98774 0.99673 1.21729 1.01475 0.93964 0.98371 1.22245 1.00167 1.01692 0.77945 1.47733 1.06991 1.67617 1.07519 1.20195 0.86060 0.78329 0.87096 1.90744 1.18582 1.50613 1.82549 1.20259 0.86032 0.78458 0.87168 1.90600 1.17443 1.49229 1.83086 1.45940 1.10898 1.70522 1.06852 1.21526 0.97766 1.02420 0.77927 1.21526 0.96061 1.02103 0.94634 1.19452 0.95586 0.97108 0.92636 1.21476 0.93655 1.49766 0.92222 0.94826 1.26050 1.01111 0.94268 0.98108 1.70069 1.31041 1.52329 1.05780 0.85642 0.79933 0.79310 0.77676 1.19290 1.21154 1.16577 1.22380 0.79521 0.96559 1.04959 1.21539 1.02077 0.96942 0.97420 0.91621 0.91574 0.92358 0.92512 0.91487 0.91985 0.93242 0.93734 0.90268 0.89121 0.87772 0.88961 0.90193 0.74718 0.90627 0.91103 0.92108 0.91810 0.95520 0.95874 0.92530 0.87830 0.86491 0.90210 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.12 -1.65 6.30 30.59 0.19 -1.46 16 3 C 0.06 0.80 5.67 71.98 0.41 1.20 16 4 O -0.41 -7.94 9.83 -148.98 -1.46 -9.40 16 5 C 0.09 1.46 2.10 28.61 0.06 1.52 16 6 H 0.08 0.82 6.93 -2.39 -0.02 0.80 16 7 C -0.11 -1.68 5.16 29.81 0.15 -1.53 16 8 C -0.12 -1.05 5.72 30.28 0.17 -0.87 16 9 C 0.10 1.35 6.11 86.49 0.53 1.88 16 10 N -0.57 -10.66 2.23 -819.76 -1.83 -12.50 16 11 C 0.50 12.69 7.69 87.27 0.67 13.36 16 12 O -0.55 -16.11 15.76 -3.27 -0.05 -16.16 16 13 C 0.50 13.69 7.74 87.27 0.68 14.37 16 14 O -0.53 -15.16 12.22 -3.26 -0.04 -15.20 16 15 N -0.69 -19.14 5.55 -464.41 -2.58 -21.71 16 16 C 0.13 3.83 5.67 86.38 0.49 4.32 16 17 C -0.11 -3.83 5.27 30.59 0.16 -3.67 16 18 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 19 C -0.53 -30.43 9.66 25.60 0.25 -30.18 16 20 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 21 C 0.00 0.08 5.47 84.66 0.46 0.54 16 22 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 23 Si 0.95 43.97 27.47 68.60 1.88 45.86 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 27 C 0.09 1.44 4.98 87.37 0.43 1.88 16 28 C -0.14 -2.60 4.65 29.39 0.14 -2.47 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.66 8.06 -2.39 -0.02 0.64 16 35 H 0.05 0.67 7.42 -2.39 -0.02 0.65 16 36 H 0.04 0.91 7.48 -2.39 -0.02 0.89 16 37 H 0.08 1.13 8.07 -2.38 -0.02 1.11 16 38 H 0.09 0.48 7.31 -2.39 -0.02 0.46 16 39 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 1.37 6.93 -2.39 -0.02 1.35 16 42 H 0.42 10.94 7.96 -92.71 -0.74 10.20 16 43 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 47 H 0.03 1.16 7.20 -2.38 -0.02 1.15 16 48 H 0.02 1.00 7.57 -2.39 -0.02 0.99 16 49 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 50 H 0.10 1.04 8.06 -2.39 -0.02 1.02 16 51 H 0.12 2.40 4.88 -28.70 -0.14 2.26 16 52 H 0.08 1.42 7.37 -2.39 -0.02 1.41 16 53 H 0.04 1.04 7.83 -2.39 -0.02 1.02 16 Total: -1.00 -71.29 412.85 1.82 -69.47 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -0.04 Total: 21.27 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.63 Total: -2.08 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -4.11 Total: -93.75 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.56 Total: -40.76 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -71.29 1.82 -69.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343312636.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.681 kcal (2) G-P(sol) polarization free energy of solvation -71.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds