Wall clock time and date at job start Tue Mar 31 2020 22:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42905 * 109.47264 * 120.00133 * 2 1 3 5 5 C 1.42900 * 114.00074 * 89.99687 * 4 2 1 6 6 H 1.09007 * 112.85004 * 18.80534 * 5 4 2 7 7 C 1.53784 * 113.61723 * 247.50194 * 5 4 2 8 8 C 1.53785 * 87.08072 * 220.01683 * 7 5 4 9 9 H 1.09001 * 113.61108 * 139.97516 * 8 7 5 10 10 N 1.46501 * 113.68883 * 270.87205 * 8 7 5 11 11 C 1.34773 * 119.99309 * 252.53118 * 10 8 7 12 12 O 1.21347 * 120.00680 * 0.02562 * 11 10 8 13 13 C 1.49456 * 119.99541 * 179.97438 * 11 10 8 14 14 O 1.21347 * 119.99778 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99898 * 179.97438 * 13 11 10 16 16 C 1.46501 * 119.99665 * 180.02562 * 15 13 11 17 17 C 1.52999 * 109.46779 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47043 * 180.02562 * 17 16 15 19 19 C 1.50711 * 109.47346 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99604 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00294 * 179.97438 * 19 18 17 22 22 N 1.31522 * 120.00045 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00215 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47437 * 89.99908 * 23 21 19 25 25 H 1.48499 * 109.47019 * 210.00234 * 23 21 19 26 26 H 1.48505 * 109.46864 * 330.00059 * 23 21 19 27 27 C 1.53784 * 113.61555 * 149.99976 * 5 4 2 28 28 C 1.52992 * 113.61552 * 254.53131 * 27 5 4 29 29 C 1.52995 * 113.61053 * 25.35322 * 27 5 4 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 37 37 H 1.08997 * 113.61248 * 334.56536 * 7 5 4 38 38 H 1.08996 * 113.61439 * 105.46560 * 7 5 4 39 39 H 0.96999 * 119.99927 * 72.53966 * 10 8 7 40 40 H 0.96999 * 120.00408 * 0.02562 * 15 13 11 41 41 H 1.08999 * 109.47404 * 300.00332 * 16 15 13 42 42 H 1.08999 * 109.46815 * 60.00786 * 16 15 13 43 43 H 1.09005 * 109.47718 * 300.00287 * 17 16 15 44 44 H 1.08998 * 109.47538 * 60.00174 * 17 16 15 45 45 H 1.09000 * 109.47617 * 300.00005 * 18 17 16 46 46 H 1.08997 * 109.47566 * 60.00365 * 18 17 16 47 47 H 0.96992 * 120.00077 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.47342 * 79.50283 * 28 27 5 49 49 H 1.09003 * 109.47491 * 199.50468 * 28 27 5 50 50 H 1.09007 * 109.47535 * 319.50622 * 28 27 5 51 51 H 1.09000 * 109.47336 * 40.49219 * 29 27 5 52 52 H 1.09001 * 109.46932 * 160.49521 * 29 27 5 53 53 H 1.09006 * 109.47230 * 280.49323 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9886 6 1 2.2731 -2.3658 -0.0603 7 6 1.2204 -2.9430 1.7995 8 6 2.4061 -3.8801 2.0840 9 1 2.4247 -4.2633 3.1042 10 7 2.5803 -4.9310 1.0782 11 6 2.2671 -6.2075 1.3763 12 8 1.8405 -6.4863 2.4775 13 6 2.4443 -7.2795 0.3500 14 8 2.8705 -7.0005 -0.7513 15 7 2.1316 -8.5561 0.6483 16 6 2.3058 -9.6069 -0.3575 17 6 1.8804 -10.9530 0.2324 18 6 2.0629 -12.0506 -0.8177 19 6 1.6444 -13.3766 -0.2365 20 1 1.2840 -13.4309 0.7802 21 6 1.7208 -14.5202 -1.0028 22 7 2.1593 -14.4540 -2.2410 23 14 1.2015 -16.1636 -0.2826 24 1 -0.2437 -16.3839 -0.5432 25 1 1.9899 -17.2521 -0.9141 26 1 1.4456 -16.1614 1.1823 27 6 3.3194 -2.6620 1.8668 28 6 4.5992 -2.9858 1.0935 29 6 3.5825 -1.8561 3.1403 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 0.8331 -2.4465 2.6891 38 1 0.4378 -3.4004 1.1943 39 1 2.9211 -4.7080 0.1978 40 1 1.7912 -8.7791 1.5288 41 1 1.6906 -9.3817 -1.2287 42 1 3.3533 -9.6550 -0.6550 43 1 2.4952 -11.1785 1.1038 44 1 0.8328 -10.9047 0.5297 45 1 1.4483 -11.8254 -1.6893 46 1 3.1105 -12.0989 -1.1146 47 1 2.2126 -15.2584 -2.7803 48 1 5.1678 -2.0699 0.9321 49 1 5.2014 -3.6911 1.6663 50 1 4.3404 -3.4271 0.1309 51 1 2.6337 -1.5307 3.5669 52 1 4.1107 -2.4792 3.8620 53 1 4.1906 -0.9841 2.8994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343328235.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:41 Heat of formation + Delta-G solvation = -140.940159 kcal Electronic energy + Delta-G solvation = -29578.056781 eV Core-core repulsion = 25448.982899 eV Total energy + Delta-G solvation = -4129.073883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.18910 -41.09284 -39.49715 -38.20982 -37.16749 -35.36126 -34.59897 -33.08568 -33.02763 -31.47157 -29.05233 -28.37272 -28.07028 -26.83109 -25.26174 -24.07374 -23.32678 -22.37518 -22.23410 -21.38623 -20.23637 -19.11986 -18.46910 -18.16475 -17.56722 -17.22051 -16.68481 -16.54603 -16.39729 -16.29115 -16.06559 -15.90055 -15.19588 -14.94026 -14.83906 -14.66658 -14.28618 -14.13743 -14.11650 -13.78167 -13.53023 -13.32014 -13.18558 -13.10696 -13.07094 -12.97342 -12.88140 -12.76110 -12.68532 -12.54852 -12.40523 -12.33108 -12.08654 -11.70307 -11.69959 -11.56522 -11.55065 -11.23773 -11.20338 -10.74829 -10.54613 -10.34931 -10.30091 -10.23930 -8.19415 -6.30309 0.25850 1.20530 1.42395 1.43042 1.54184 2.05407 2.41360 2.54426 2.71760 3.14578 3.22955 3.34419 3.43847 3.73010 3.83791 4.02244 4.07671 4.16143 4.17885 4.21647 4.27008 4.34327 4.48150 4.52226 4.62315 4.69664 4.76535 4.79771 4.85635 4.86504 4.89722 4.91321 4.92906 4.97344 4.99569 5.05957 5.10529 5.14701 5.20763 5.23922 5.30000 5.34230 5.37538 5.45747 5.51673 5.70754 5.84484 5.85886 6.22586 6.28739 6.38632 6.65962 6.86387 6.87065 7.39129 8.92369 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025518 B = 0.001602 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.991924 B =17473.119494 C =17756.761229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.370 6.370 5 C 0.075 3.925 6 H 0.093 0.907 7 C -0.161 4.161 8 C 0.119 3.881 9 H 0.106 0.894 10 N -0.671 5.671 11 C 0.519 3.481 12 O -0.536 6.536 13 C 0.502 3.498 14 O -0.546 6.546 15 N -0.686 5.686 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.024 3.976 19 C -0.543 4.543 20 H 0.064 0.936 21 C -0.001 4.001 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.263 1.263 27 C -0.079 4.079 28 C -0.141 4.141 29 C -0.113 4.113 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.418 0.582 40 H 0.419 0.581 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.067 0.933 45 H -0.003 1.003 46 H -0.003 1.003 47 H 0.263 0.737 48 H 0.071 0.929 49 H 0.060 0.940 50 H 0.057 0.943 51 H 0.062 0.938 52 H 0.062 0.938 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 34.016 8.051 34.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 C -0.204 4.204 4 O -0.289 6.289 5 C 0.017 3.983 6 H 0.110 0.890 7 C -0.200 4.200 8 C 0.014 3.986 9 H 0.124 0.876 10 N -0.324 5.324 11 C 0.299 3.701 12 O -0.412 6.412 13 C 0.283 3.717 14 O -0.424 6.424 15 N -0.338 5.338 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.581 4.581 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.573 5.573 23 Si 0.790 3.210 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.187 1.187 27 C -0.080 4.080 28 C -0.198 4.198 29 C -0.171 4.171 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.256 0.744 40 H 0.257 0.743 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.015 0.985 46 H 0.015 0.985 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.081 0.919 52 H 0.081 0.919 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.903 34.003 8.076 34.961 hybrid contribution -0.344 -1.336 -0.390 1.434 sum 0.559 32.667 7.686 33.564 Atomic orbital electron populations 1.22305 0.95753 1.02112 1.02847 1.22340 0.93956 0.94389 0.87841 1.21855 1.01642 0.93970 1.02952 1.87960 1.85639 1.19288 1.35969 1.23957 0.95007 0.81050 0.98332 0.88974 1.23928 0.97077 0.96761 1.02211 1.22011 0.97620 0.86117 0.92840 0.87645 1.45418 1.63812 1.05344 1.17856 1.19952 0.78665 0.84229 0.87216 1.90762 1.44668 1.82565 1.23243 1.20277 0.79279 0.84380 0.87809 1.90750 1.45442 1.82593 1.23661 1.45885 1.63345 1.06209 1.18337 1.21486 1.01486 0.85920 0.90684 1.21643 1.01466 0.91953 0.99360 1.18939 0.95506 0.92871 0.94016 1.21687 1.43316 0.93604 0.99522 0.91794 1.25967 0.95252 1.03405 0.95223 1.70096 1.47787 1.29995 1.09376 0.85447 0.78266 0.78455 0.78874 1.19883 1.20945 1.18678 1.22526 0.94468 0.93170 0.97791 1.21742 0.96180 1.02346 0.99518 1.21362 1.02365 0.99153 0.94175 0.90683 0.92245 0.93103 0.91749 0.92230 0.92166 0.90037 0.87584 0.91160 0.74356 0.74319 0.91666 0.91635 0.91464 0.91464 0.98497 0.98470 0.92807 0.90960 0.92095 0.92382 0.91944 0.91950 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 9.53 71.98 0.69 -1.11 16 2 C 0.07 0.79 3.33 30.59 0.10 0.89 16 3 C -0.15 -1.29 9.56 71.98 0.69 -0.61 16 4 O -0.37 -5.09 9.14 -148.98 -1.36 -6.45 16 5 C 0.07 0.95 3.57 31.12 0.11 1.07 16 6 H 0.09 1.08 7.32 -2.38 -0.02 1.06 16 7 C -0.16 -2.30 7.36 31.12 0.23 -2.07 16 8 C 0.12 1.89 3.78 45.52 0.17 2.06 16 9 H 0.11 1.92 7.42 -2.39 -0.02 1.90 16 10 N -0.67 -12.53 4.77 -441.35 -2.11 -14.64 16 11 C 0.52 12.78 7.89 87.27 0.69 13.47 16 12 O -0.54 -15.16 16.08 -3.24 -0.05 -15.21 16 13 C 0.50 14.25 7.89 87.27 0.69 14.94 16 14 O -0.55 -17.67 16.48 -3.24 -0.05 -17.72 16 15 N -0.69 -19.62 5.55 -464.41 -2.58 -22.20 16 16 C 0.13 4.27 5.67 86.38 0.49 4.76 16 17 C -0.11 -4.05 5.27 30.59 0.16 -3.89 16 18 C 0.02 1.24 4.97 29.85 0.15 1.39 16 19 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 22 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 23 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 27 C -0.08 -0.99 1.34 -51.66 -0.07 -1.06 16 28 C -0.14 -1.67 8.63 71.98 0.62 -1.05 16 29 C -0.11 -1.31 8.42 71.98 0.61 -0.71 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.06 0.64 7.42 -2.39 -0.02 0.62 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.11 1.45 7.63 -2.39 -0.02 1.44 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.42 7.00 6.57 -92.71 -0.61 6.39 16 40 H 0.42 10.78 7.94 -92.71 -0.74 10.05 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.06 0.67 6.55 -2.38 -0.02 0.65 16 51 H 0.06 0.76 7.25 -2.39 -0.02 0.74 16 52 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -66.74 430.51 1.73 -65.01 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -0.45 Total: 22.81 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 6.02 Total: -1.42 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -4.40 Total: -92.77 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.47 Total: -39.39 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -66.74 1.73 -65.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343328235.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.930 kcal (2) G-P(sol) polarization free energy of solvation -66.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds