Wall clock time and date at job start Tue Mar 31 2020 22:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 O 1.42894 * 109.47454 * 120.00222 * 2 1 3 5 5 C 1.42901 * 114.00128 * 89.99848 * 4 2 1 6 6 H 1.09002 * 112.84974 * 20.33446 * 5 4 2 7 7 C 1.53781 * 113.61413 * 249.14139 * 5 4 2 8 8 C 1.53793 * 87.07845 * 270.79882 * 7 5 4 9 9 H 1.08999 * 113.61195 * 220.02428 * 8 7 5 10 10 N 1.46497 * 113.61367 * 89.20011 * 8 7 5 11 11 C 1.34777 * 119.99798 * 104.50735 * 10 8 7 12 12 O 1.21355 * 120.00180 * 359.97438 * 11 10 8 13 13 C 1.49448 * 120.00035 * 180.02562 * 11 10 8 14 14 O 1.21347 * 119.99812 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00035 * 180.02562 * 13 11 10 16 16 C 1.46504 * 120.00009 * 179.97438 * 15 13 11 17 17 C 1.52996 * 109.47061 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.47055 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47434 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99405 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00362 * 179.97438 * 19 18 17 22 22 N 1.31522 * 119.99618 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00148 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47207 * 60.00044 * 23 21 19 25 25 H 1.48500 * 109.47052 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46851 * 299.99879 * 23 21 19 27 27 C 1.53777 * 87.08084 * 334.56672 * 8 7 5 28 28 C 1.53000 * 113.61738 * 270.88525 * 27 8 7 29 29 C 1.53001 * 113.61481 * 139.97977 * 27 8 7 30 30 H 1.09001 * 109.47737 * 59.99806 * 1 2 3 31 31 H 1.08999 * 109.47162 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47403 * 299.99826 * 1 2 3 33 33 H 1.08999 * 109.47063 * 240.00551 * 2 1 3 34 34 H 1.08996 * 109.47534 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47439 * 300.00438 * 3 2 1 36 36 H 1.09003 * 109.47342 * 59.99987 * 3 2 1 37 37 H 1.09000 * 113.61578 * 25.34440 * 7 5 4 38 38 H 1.09001 * 113.61682 * 156.17020 * 7 5 4 39 39 H 0.96993 * 120.00386 * 284.50674 * 10 8 7 40 40 H 0.97002 * 120.00419 * 359.97438 * 15 13 11 41 41 H 1.08997 * 109.47063 * 300.00043 * 16 15 13 42 42 H 1.09007 * 109.46967 * 59.99519 * 16 15 13 43 43 H 1.08997 * 109.47474 * 300.00106 * 17 16 15 44 44 H 1.08995 * 109.47177 * 60.00519 * 17 16 15 45 45 H 1.08999 * 109.47527 * 300.00057 * 18 17 16 46 46 H 1.09004 * 109.47396 * 60.00057 * 18 17 16 47 47 H 0.97002 * 119.99713 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.47168 * 177.00054 * 28 27 8 49 49 H 1.08993 * 109.47081 * 297.00340 * 28 27 8 50 50 H 1.08996 * 109.46762 * 57.00240 * 28 27 8 51 51 H 1.09004 * 109.47009 * 303.00149 * 29 27 8 52 52 H 1.09001 * 109.47157 * 62.99715 * 29 27 8 53 53 H 1.08998 * 109.47200 * 182.99802 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9885 6 1 2.2997 -2.3622 -0.0592 7 6 1.1951 -2.9425 1.7681 8 6 2.1897 -2.9021 2.9404 9 1 2.2809 -3.8513 3.4685 10 7 1.9872 -1.7660 3.8429 11 6 1.4090 -1.9555 5.0455 12 8 1.0557 -3.0671 5.3806 13 6 1.2019 -0.7965 5.9660 14 8 1.5547 0.3151 5.6308 15 7 0.6241 -0.9860 7.1688 16 6 0.4216 0.1501 8.0714 17 6 -0.2483 -0.3345 9.3587 18 6 -0.4593 0.8519 10.3015 19 6 -1.1186 0.3746 11.5699 20 1 -1.3623 -0.6704 11.6914 21 6 -1.4096 1.2719 12.5755 22 7 -1.1123 2.5445 12.4275 23 14 -2.2262 0.6801 14.1478 24 1 -1.3582 -0.3283 14.8071 25 1 -2.4310 1.8317 15.0629 26 1 -3.5391 0.0669 13.8232 27 6 3.2926 -2.6710 1.8940 28 6 3.9032 -3.9646 1.3512 29 6 4.3471 -1.6518 2.3299 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.2531 -2.4355 1.9771 38 1 1.0556 -3.9378 1.3462 39 1 2.2692 -0.8775 3.5750 40 1 0.3424 -1.8747 7.4370 41 1 1.3849 0.6007 8.3100 42 1 -0.2155 0.8900 7.5868 43 1 -1.2117 -0.7849 9.1197 44 1 0.3885 -1.0744 9.8434 45 1 0.5043 1.3019 10.5406 46 1 -1.0959 1.5923 9.8171 47 1 -1.3167 3.1757 13.1351 48 1 4.6356 -3.7251 0.5802 49 1 4.3926 -4.5037 2.1623 50 1 3.1164 -4.5865 0.9243 51 1 3.8614 -0.7051 2.5668 52 1 4.8687 -2.0232 3.2120 53 1 5.0625 -1.5008 1.5215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343328237.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:49 Heat of formation + Delta-G solvation = -139.209547 kcal Electronic energy + Delta-G solvation = -30192.920101 eV Core-core repulsion = 26063.921263 eV Total energy + Delta-G solvation = -4128.998838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.16696 -41.10118 -39.44987 -38.08953 -37.17391 -35.35695 -34.51006 -33.16332 -33.04609 -31.43331 -29.07352 -28.20818 -28.08940 -26.83972 -25.29990 -24.02037 -23.30394 -22.38432 -22.24398 -21.29272 -20.22670 -19.16902 -18.48526 -17.96386 -17.40850 -17.18159 -16.80666 -16.51255 -16.41081 -16.28055 -16.06365 -15.98855 -15.21538 -15.08457 -14.78878 -14.40321 -14.32668 -14.25449 -13.98566 -13.79433 -13.53676 -13.34602 -13.24159 -13.09046 -13.02454 -12.96181 -12.80018 -12.73360 -12.72022 -12.55008 -12.44321 -12.28594 -12.03359 -11.70780 -11.60095 -11.56350 -11.51356 -11.25830 -11.05022 -10.70026 -10.54619 -10.35199 -10.33502 -10.16360 -8.19584 -6.30728 0.28111 1.25812 1.41761 1.44596 1.52470 2.07425 2.40614 2.45882 2.71128 3.14040 3.32725 3.40827 3.54348 3.77334 3.99208 4.03088 4.06870 4.16296 4.16442 4.23191 4.29706 4.38272 4.50828 4.54444 4.63370 4.72027 4.75096 4.81700 4.84976 4.87585 4.89954 4.92212 4.94898 4.98531 5.01350 5.09531 5.13390 5.14336 5.21029 5.30328 5.31761 5.33534 5.39360 5.48532 5.50762 5.69643 5.83684 5.91403 6.22400 6.32102 6.43416 6.70070 6.85821 6.90077 7.38482 8.92163 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.001891 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.319898 B =14800.240132 C =15589.830522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 C -0.151 4.151 4 O -0.376 6.376 5 C 0.075 3.925 6 H 0.100 0.900 7 C -0.169 4.169 8 C 0.115 3.885 9 H 0.098 0.902 10 N -0.664 5.664 11 C 0.514 3.486 12 O -0.541 6.541 13 C 0.500 3.500 14 O -0.547 6.547 15 N -0.686 5.686 16 C 0.127 3.873 17 C -0.105 4.105 18 C 0.025 3.975 19 C -0.543 4.543 20 H 0.064 0.936 21 C -0.003 4.003 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.267 1.267 27 C -0.081 4.081 28 C -0.123 4.123 29 C -0.134 4.134 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.124 0.876 39 H 0.418 0.582 40 H 0.419 0.581 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.067 0.933 45 H -0.004 1.004 46 H -0.004 1.004 47 H 0.264 0.736 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.075 0.925 51 H 0.052 0.948 52 H 0.051 0.949 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.848 -12.613 -32.483 36.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.025 3.975 3 C -0.208 4.208 4 O -0.295 6.295 5 C 0.017 3.983 6 H 0.117 0.883 7 C -0.207 4.207 8 C 0.010 3.990 9 H 0.116 0.884 10 N -0.317 5.317 11 C 0.294 3.706 12 O -0.419 6.419 13 C 0.280 3.720 14 O -0.426 6.426 15 N -0.338 5.338 16 C 0.004 3.996 17 C -0.143 4.143 18 C -0.012 4.012 19 C -0.581 4.581 20 H 0.083 0.917 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.791 3.209 24 H -0.191 1.191 25 H -0.210 1.210 26 H -0.191 1.191 27 C -0.082 4.082 28 C -0.180 4.180 29 C -0.192 4.192 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.142 0.858 39 H 0.258 0.742 40 H 0.257 0.743 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.014 0.986 46 H 0.014 0.986 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.094 0.906 51 H 0.071 0.929 52 H 0.070 0.930 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.875 -12.327 -32.221 35.885 hybrid contribution -0.686 0.333 1.091 1.331 sum 9.189 -11.994 -31.130 34.603 Atomic orbital electron populations 1.22327 0.96177 1.02264 1.02372 1.22310 0.93509 0.93934 0.87793 1.21891 1.01825 0.94458 1.02637 1.87855 1.85603 1.19276 1.36812 1.23332 0.94682 0.81157 0.99175 0.88258 1.24001 0.97946 1.02235 0.96555 1.22255 0.97842 0.89088 0.89807 0.88426 1.45482 1.58147 1.13442 1.14601 1.19959 0.79153 0.88234 0.83255 1.90737 1.50353 1.25092 1.75701 1.20362 0.79254 0.89049 0.83290 1.90750 1.50581 1.25808 1.75416 1.45871 1.58760 1.13559 1.15605 1.21484 1.00717 0.87767 0.89617 1.21637 1.00187 0.99338 0.93145 1.18929 0.95362 0.93389 0.93561 1.21644 1.39622 0.94952 1.01869 0.91744 1.26004 0.96526 0.94990 1.02515 1.70100 1.48912 1.03334 1.34997 0.85478 0.79194 0.77777 0.78462 1.19115 1.21042 1.19141 1.22518 0.93773 0.97737 0.94205 1.21575 1.01369 0.93438 1.01620 1.21549 0.97937 0.98214 1.01482 0.90321 0.92452 0.93769 0.90191 0.91862 0.89683 0.93412 0.91984 0.85825 0.74246 0.74347 0.91748 0.91857 0.91455 0.91403 0.98550 0.98588 0.92775 0.90297 0.91547 0.90608 0.92923 0.93006 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.53 71.98 0.69 -1.55 16 2 C 0.08 0.99 3.34 30.59 0.10 1.10 16 3 C -0.15 -1.84 9.56 71.98 0.69 -1.15 16 4 O -0.38 -5.95 7.34 -148.98 -1.09 -7.05 16 5 C 0.07 0.88 3.75 31.12 0.12 0.99 16 6 H 0.10 0.72 7.42 -2.39 -0.02 0.70 16 7 C -0.17 -2.32 7.36 31.12 0.23 -2.10 16 8 C 0.11 2.00 3.73 45.52 0.17 2.17 16 9 H 0.10 1.85 7.49 -2.39 -0.02 1.83 16 10 N -0.66 -15.33 4.68 -441.36 -2.06 -17.40 16 11 C 0.51 14.54 7.89 87.27 0.69 15.23 16 12 O -0.54 -16.74 16.12 -3.26 -0.05 -16.79 16 13 C 0.50 15.99 7.89 87.27 0.69 16.67 16 14 O -0.55 -20.00 16.48 -3.24 -0.05 -20.06 16 15 N -0.69 -21.41 5.55 -464.41 -2.58 -23.98 16 16 C 0.13 4.55 5.67 86.38 0.49 5.04 16 17 C -0.11 -4.16 5.27 30.59 0.16 -4.00 16 18 C 0.03 1.32 4.97 29.85 0.15 1.47 16 19 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 20 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 21 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 22 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 23 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C -0.08 -0.98 1.34 -51.65 -0.07 -1.05 16 28 C -0.12 -0.86 9.07 71.98 0.65 -0.21 16 29 C -0.13 -1.90 8.45 71.98 0.61 -1.29 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.65 7.42 -2.39 -0.02 0.63 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.12 1.10 7.63 -2.39 -0.02 1.08 16 39 H 0.42 9.98 5.50 -92.71 -0.51 9.47 16 40 H 0.42 11.74 7.94 -92.71 -0.74 11.01 16 41 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 47 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.07 0.35 7.32 -2.39 -0.02 0.33 16 51 H 0.05 0.93 5.60 -2.38 -0.01 0.92 16 52 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -69.86 427.49 2.17 -67.68 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.35 Total: 26.86 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 6.06 Total: 1.26 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -4.36 Total: -98.20 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.20 Total: -43.90 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.86 2.17 -67.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343328237.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.529 kcal (2) G-P(sol) polarization free energy of solvation -69.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds