Wall clock time and date at job start Tue Mar 31 2020 22:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47056 * 2 1 4 4 O 1.42901 * 109.47311 * 120.00341 * 2 1 3 5 5 C 1.42900 * 113.99756 * 150.00158 * 4 2 1 6 6 H 1.08997 * 112.85487 * 338.30828 * 5 4 2 7 7 C 1.53781 * 113.61371 * 109.50575 * 5 4 2 8 8 C 1.53786 * 87.17350 * 140.02193 * 7 5 4 9 9 H 1.09000 * 113.61138 * 220.06261 * 8 7 5 10 10 N 1.46496 * 113.61518 * 89.15486 * 8 7 5 11 11 C 1.34780 * 119.99231 * 104.50765 * 10 8 7 12 12 O 1.21348 * 120.00801 * 359.97438 * 11 10 8 13 13 C 1.49455 * 119.99400 * 180.02562 * 11 10 8 14 14 O 1.21356 * 119.99991 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99776 * 180.02562 * 13 11 10 16 16 C 1.46496 * 119.99607 * 179.97438 * 15 13 11 17 17 C 1.53004 * 109.47237 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47752 * 179.97438 * 17 16 15 19 19 C 1.50692 * 109.47486 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00029 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00364 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99848 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46910 * 90.00175 * 23 21 19 25 25 H 1.48499 * 109.47197 * 209.99723 * 23 21 19 26 26 H 1.48501 * 109.47388 * 330.00338 * 23 21 19 27 27 C 1.53782 * 113.68763 * 207.04098 * 5 4 2 28 28 C 1.52996 * 113.61446 * 334.55470 * 27 5 4 29 29 C 1.52998 * 113.61779 * 105.37549 * 27 5 4 30 30 H 1.08994 * 109.47146 * 299.99143 * 1 2 3 31 31 H 1.08997 * 109.47470 * 60.00048 * 1 2 3 32 32 H 1.09004 * 109.46599 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47005 * 240.00648 * 2 1 3 34 34 H 1.08998 * 109.47630 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47369 * 300.00594 * 3 2 1 36 36 H 1.09003 * 109.46684 * 60.00451 * 3 2 1 37 37 H 1.09002 * 113.61445 * 254.61193 * 7 5 4 38 38 H 1.09002 * 113.61408 * 25.42923 * 7 5 4 39 39 H 0.96992 * 120.00316 * 284.50985 * 10 8 7 40 40 H 0.96992 * 120.00077 * 359.97438 * 15 13 11 41 41 H 1.08997 * 109.47729 * 299.99239 * 16 15 13 42 42 H 1.09000 * 109.47671 * 59.99523 * 16 15 13 43 43 H 1.08997 * 109.47012 * 300.00573 * 17 16 15 44 44 H 1.09000 * 109.46816 * 59.99445 * 17 16 15 45 45 H 1.09002 * 109.47031 * 300.00347 * 18 17 16 46 46 H 1.09006 * 109.46603 * 59.99965 * 18 17 16 47 47 H 0.96999 * 120.00414 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.47267 * 79.50746 * 28 27 5 49 49 H 1.09002 * 109.47394 * 199.50506 * 28 27 5 50 50 H 1.09003 * 109.47316 * 319.50608 * 28 27 5 51 51 H 1.09004 * 109.46667 * 40.49400 * 29 27 5 52 52 H 1.08995 * 109.47416 * 160.49191 * 29 27 5 53 53 H 1.08999 * 109.47065 * 280.49569 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9884 6 1 3.4899 -1.5342 -0.0575 7 6 4.4222 -0.6456 1.7417 8 6 4.9298 -2.0573 2.0801 9 1 5.3098 -2.1524 3.0973 10 7 5.8430 -2.6089 1.0762 11 6 7.1667 -2.6593 1.3248 12 8 7.6021 -2.2473 2.3799 13 6 8.0984 -3.2215 0.3004 14 8 7.6630 -3.6331 -0.7550 15 7 9.4221 -3.2724 0.5491 16 6 10.3353 -3.8240 -0.4548 17 6 11.7700 -3.7648 0.0735 18 6 12.7238 -4.3415 -0.9747 19 6 14.1367 -4.2837 -0.4541 20 1 14.3347 -3.8768 0.5266 21 6 15.1768 -4.7503 -1.2296 22 7 14.9357 -5.2463 -2.4235 23 14 16.9284 -4.6780 -0.5845 24 1 17.2388 -5.9328 0.1467 25 1 17.8692 -4.5230 -1.7230 26 1 17.0697 -3.5211 0.3356 27 6 3.4744 -2.5324 1.9172 28 6 2.6594 -2.4592 3.2100 29 6 3.3425 -3.8813 1.2073 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 5.0948 -0.0834 1.0939 38 1 4.1005 -0.0765 2.6139 39 1 5.4950 -2.9378 0.2327 40 1 9.7700 -2.9438 1.3928 41 1 10.0662 -4.8600 -0.6607 42 1 10.2620 -3.2404 -1.3725 43 1 12.0390 -2.7288 0.2791 44 1 11.8436 -4.3482 0.9913 45 1 12.4546 -5.3776 -1.1799 46 1 12.6502 -3.7584 -1.8927 47 1 15.6675 -5.5743 -2.9693 48 1 1.6309 -2.7584 3.0085 49 1 3.0940 -3.1291 3.9519 50 1 2.6728 -1.4378 3.5906 51 1 3.8195 -3.8250 0.2288 52 1 3.8268 -4.6545 1.8036 53 1 2.2874 -4.1252 1.0838 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343328238.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:53 Heat of formation + Delta-G solvation = -141.049987 kcal Electronic energy + Delta-G solvation = -29583.898351 eV Core-core repulsion = 25454.819706 eV Total energy + Delta-G solvation = -4129.078645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.18583 -41.08999 -39.49574 -38.20881 -37.16784 -35.36268 -34.60025 -33.08639 -33.02810 -31.47494 -29.05340 -28.37307 -28.07287 -26.83388 -25.26351 -24.07880 -23.32387 -22.37568 -22.23263 -21.37811 -20.23736 -19.12379 -18.47075 -18.16534 -17.57031 -17.21880 -16.68198 -16.55280 -16.40526 -16.29530 -16.06758 -15.90084 -15.19644 -14.94862 -14.82827 -14.68412 -14.28618 -14.13252 -14.10757 -13.78230 -13.53135 -13.31599 -13.18970 -13.11046 -13.07110 -12.97347 -12.88681 -12.76109 -12.69291 -12.54887 -12.40569 -12.33174 -12.08169 -11.70307 -11.69638 -11.56373 -11.54274 -11.23871 -11.20905 -10.74798 -10.54673 -10.35395 -10.30983 -10.24109 -8.19451 -6.30333 0.25812 1.20499 1.42360 1.43000 1.54146 2.05365 2.41317 2.54434 2.70902 3.14549 3.21785 3.34357 3.43642 3.72768 3.83881 4.02055 4.07591 4.15893 4.17840 4.21313 4.26676 4.34114 4.47839 4.52217 4.62404 4.69215 4.76370 4.80038 4.85516 4.86232 4.89579 4.91264 4.92702 4.97228 4.99442 5.05804 5.10636 5.14668 5.20746 5.23912 5.29915 5.34109 5.37477 5.45743 5.51609 5.70712 5.84416 5.85811 6.22606 6.28681 6.38214 6.65903 6.86355 6.87024 7.39089 8.92330 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.001607 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.046802 B =17419.540625 C =17690.887223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.370 6.370 5 C 0.075 3.925 6 H 0.092 0.908 7 C -0.163 4.163 8 C 0.120 3.880 9 H 0.105 0.895 10 N -0.672 5.672 11 C 0.519 3.481 12 O -0.536 6.536 13 C 0.502 3.498 14 O -0.546 6.546 15 N -0.685 5.685 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.024 3.976 19 C -0.543 4.543 20 H 0.064 0.936 21 C -0.001 4.001 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.263 1.263 27 C -0.076 4.076 28 C -0.114 4.114 29 C -0.141 4.141 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.418 0.582 40 H 0.419 0.581 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.067 0.933 45 H -0.003 1.003 46 H -0.003 1.003 47 H 0.263 0.737 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.061 0.939 51 H 0.057 0.943 52 H 0.061 0.939 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.297 10.095 8.656 34.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 C -0.230 4.230 4 O -0.289 6.289 5 C 0.017 3.983 6 H 0.109 0.891 7 C -0.201 4.201 8 C 0.015 3.985 9 H 0.123 0.877 10 N -0.325 5.325 11 C 0.299 3.701 12 O -0.412 6.412 13 C 0.282 3.718 14 O -0.425 6.425 15 N -0.338 5.338 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.581 4.581 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.572 5.572 23 Si 0.790 3.210 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.187 1.187 27 C -0.077 4.077 28 C -0.171 4.171 29 C -0.198 4.198 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.257 0.743 40 H 0.257 0.743 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.015 0.985 46 H 0.015 0.985 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.076 0.924 52 H 0.080 0.920 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -32.311 10.023 8.680 34.926 hybrid contribution 1.380 -0.093 -0.422 1.447 sum -30.931 9.931 8.258 33.519 Atomic orbital electron populations 1.21856 0.92874 1.02718 1.02959 1.22334 0.95628 0.92713 0.87840 1.22303 1.01168 0.96692 1.02850 1.87956 1.35777 1.69158 1.35960 1.23940 0.83567 0.92521 0.98312 0.89057 1.23944 0.97660 0.96301 1.02235 1.22044 0.88924 0.94809 0.92755 0.87679 1.45432 1.04806 1.61057 1.21189 1.19953 0.84005 0.79438 0.86690 1.90763 1.77141 1.47264 1.26052 1.20282 0.83963 0.80190 0.87319 1.90752 1.77208 1.47972 1.26519 1.45881 1.05661 1.60644 1.21581 1.21486 0.88595 0.98708 0.90792 1.21643 0.91472 1.01683 0.99622 1.18936 0.93501 0.94915 0.93971 1.21684 0.93141 1.40676 1.02640 0.91797 1.25966 1.03977 0.94822 0.95076 1.70093 1.33512 1.42430 1.11208 0.85449 0.78753 0.78902 0.77942 1.19867 1.20949 1.18687 1.22524 0.92463 0.94979 0.97719 1.21369 0.99393 1.02451 0.93886 1.21748 1.02993 0.95208 0.99895 0.92206 0.90044 0.92156 0.91791 0.93130 0.90686 0.92230 0.91305 0.87632 0.74339 0.74321 0.91632 0.91670 0.91483 0.91450 0.98484 0.98488 0.92804 0.91265 0.91870 0.91966 0.92372 0.91959 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.56 71.98 0.69 -0.62 16 2 C 0.07 0.80 3.34 30.59 0.10 0.90 16 3 C -0.17 -1.83 9.53 71.98 0.69 -1.14 16 4 O -0.37 -5.12 9.16 -148.98 -1.36 -6.49 16 5 C 0.07 0.96 3.57 31.12 0.11 1.07 16 6 H 0.09 1.09 7.34 -2.39 -0.02 1.07 16 7 C -0.16 -2.35 7.35 31.12 0.23 -2.13 16 8 C 0.12 1.90 3.74 45.58 0.17 2.07 16 9 H 0.11 1.90 7.50 -2.39 -0.02 1.88 16 10 N -0.67 -12.57 4.82 -441.07 -2.13 -14.70 16 11 C 0.52 12.80 7.89 87.27 0.69 13.49 16 12 O -0.54 -15.17 16.12 -3.24 -0.05 -15.22 16 13 C 0.50 14.27 7.89 87.27 0.69 14.96 16 14 O -0.55 -17.69 16.48 -3.26 -0.05 -17.75 16 15 N -0.69 -19.63 5.55 -464.40 -2.58 -22.21 16 16 C 0.13 4.27 5.67 86.38 0.49 4.76 16 17 C -0.11 -4.05 5.27 30.59 0.16 -3.89 16 18 C 0.02 1.25 4.97 29.84 0.15 1.40 16 19 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 22 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 23 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 27 C -0.08 -0.95 1.34 -51.59 -0.07 -1.02 16 28 C -0.11 -1.31 8.41 71.98 0.61 -0.70 16 29 C -0.14 -1.64 8.63 71.98 0.62 -1.02 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.06 0.65 7.43 -2.39 -0.02 0.63 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.11 1.47 7.63 -2.39 -0.02 1.45 16 39 H 0.42 7.03 6.49 -92.71 -0.60 6.43 16 40 H 0.42 10.79 7.94 -92.71 -0.74 10.06 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 47 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 50 H 0.06 0.76 7.25 -2.39 -0.02 0.74 16 51 H 0.06 0.66 6.52 -2.38 -0.02 0.64 16 52 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -66.76 430.57 1.71 -65.05 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.45 Total: 22.88 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 6.02 Total: -1.39 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -4.42 Total: -92.84 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.47 Total: -39.46 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -66.76 1.71 -65.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343328238.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.003 kcal (2) G-P(sol) polarization free energy of solvation -66.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds