Wall clock time and date at job start Tue Mar 31 2020 23:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47119 * 2 1 4 4 C 1.53000 * 109.47141 * 120.00215 * 2 1 3 5 5 H 1.08998 * 109.46678 * 299.99568 * 4 2 1 6 6 C 1.52998 * 109.46998 * 60.00055 * 4 2 1 7 7 C 1.53000 * 109.46998 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47141 * 299.99945 * 7 6 4 9 9 H 1.09001 * 109.47013 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47149 * 300.00133 * 8 7 6 11 11 C 1.53000 * 109.46935 * 59.99809 * 8 7 6 12 12 C 1.52997 * 109.46800 * 179.97438 * 4 2 1 13 13 H 1.08999 * 109.47757 * 60.00305 * 12 4 2 14 14 O 1.42906 * 109.47435 * 299.99818 * 12 4 2 15 15 C 1.42894 * 114.00292 * 150.00225 * 14 12 4 16 16 C 1.50690 * 109.47333 * 180.02562 * 15 14 12 17 17 O 1.21285 * 120.00319 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00374 * 179.97438 * 16 15 14 19 19 C 1.46504 * 120.00070 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.46819 * 180.02562 * 19 18 16 21 21 O 1.21293 * 120.00084 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99873 * 180.02562 * 20 19 18 23 23 C 1.37100 * 120.00062 * 179.97438 * 22 20 19 24 24 H 1.08009 * 119.99813 * 359.97438 * 23 22 20 25 25 C 1.38943 * 120.00384 * 179.97438 * 23 22 20 26 26 N 1.31422 * 119.99744 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00419 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47536 * 89.99940 * 27 25 23 29 29 H 1.48503 * 109.47090 * 210.00284 * 27 25 23 30 30 H 1.48501 * 109.47058 * 329.99814 * 27 25 23 31 31 H 1.09001 * 109.46688 * 299.99983 * 1 2 3 32 32 H 1.09001 * 109.47013 * 59.99781 * 1 2 3 33 33 H 1.08993 * 109.47077 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47109 * 240.00350 * 2 1 3 35 35 H 1.08996 * 109.46815 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46893 * 300.00263 * 3 2 1 37 37 H 1.09001 * 109.46844 * 60.00188 * 3 2 1 38 38 H 1.08996 * 109.46825 * 299.99686 * 6 4 2 39 39 H 1.09001 * 109.47125 * 59.99943 * 6 4 2 40 40 H 1.08993 * 109.47328 * 179.97438 * 7 6 4 41 41 H 1.09001 * 109.47168 * 59.99453 * 7 6 4 42 42 H 1.08996 * 109.47073 * 168.76891 * 10 8 7 43 43 H 1.09002 * 109.46816 * 288.77142 * 10 8 7 44 44 H 1.09000 * 109.47059 * 48.76798 * 10 8 7 45 45 H 1.09001 * 109.47439 * 60.00452 * 11 8 7 46 46 H 1.09007 * 109.46766 * 179.97438 * 11 8 7 47 47 H 1.09005 * 109.47124 * 300.00539 * 15 14 12 48 48 H 1.09004 * 109.47245 * 59.99619 * 15 14 12 49 49 H 0.97007 * 119.99505 * 0.02562 * 18 16 15 50 50 H 1.09000 * 109.46838 * 299.99757 * 19 18 16 51 51 H 1.09000 * 109.47022 * 60.00376 * 19 18 16 52 52 H 0.97000 * 120.00102 * 359.97438 * 22 20 19 53 53 H 0.96999 * 119.99713 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1391 6 6 1.5300 -2.1638 1.2491 7 6 2.0395 -2.8849 2.4987 8 6 3.5695 -2.8849 2.4993 9 1 3.9325 -3.3990 3.3893 10 6 4.0801 -3.6062 1.2503 11 6 4.0795 -1.4424 2.4993 12 6 3.5700 -0.7218 1.2488 13 1 3.9338 0.3057 1.2487 14 8 4.0459 -1.3958 0.0820 15 6 5.3055 -0.9166 -0.3929 16 6 5.7083 -1.6934 -1.6198 17 8 4.9874 -2.5706 -2.0460 18 7 6.8692 -1.4125 -2.2443 19 6 7.2610 -2.1681 -3.4367 20 6 8.5894 -1.6627 -3.9376 21 8 9.1532 -0.7598 -3.3561 22 7 9.1505 -2.2132 -5.0324 23 6 10.3588 -1.7530 -5.4885 24 1 10.8608 -0.9490 -4.9706 25 6 10.9376 -2.3208 -6.6168 26 7 10.3270 -3.2994 -7.2466 27 14 12.5841 -1.6944 -7.2377 28 1 13.6805 -2.4618 -6.5940 29 1 12.6565 -1.8686 -8.7107 30 1 12.7244 -0.2546 -6.9021 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 0.4401 -2.1637 1.2492 39 1 1.8934 -2.6776 0.3591 40 1 1.6758 -3.9124 2.4989 41 1 1.6759 -2.3709 3.3884 42 1 5.1515 -3.4362 1.1450 43 1 3.8893 -4.6753 1.3448 44 1 3.5629 -3.2212 0.3715 45 1 3.7158 -0.9284 3.3891 46 1 5.1695 -1.4424 2.5002 47 1 5.2208 0.1407 -0.6442 48 1 6.0597 -1.0461 0.3834 49 1 7.4457 -0.7106 -1.9037 50 1 7.3463 -3.2252 -3.1852 51 1 6.5066 -2.0389 -4.2128 52 1 8.6995 -2.9349 -5.4977 53 1 10.7312 -3.6961 -8.0341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343517133.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:20 Heat of formation + Delta-G solvation = -165.825564 kcal Electronic energy + Delta-G solvation = -30916.738393 eV Core-core repulsion = 26786.585399 eV Total energy + Delta-G solvation = -4130.152995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.38850 -40.74881 -39.79460 -37.20695 -36.41915 -36.23892 -35.26988 -33.38860 -31.41548 -31.34160 -30.15286 -28.03892 -27.96749 -27.21164 -26.07956 -23.49682 -23.05024 -21.65355 -21.39203 -20.61908 -20.09671 -19.78999 -18.75822 -17.75466 -17.31229 -17.12977 -16.92189 -16.46138 -16.25978 -16.15391 -15.70976 -15.61093 -15.38717 -14.84717 -14.78986 -14.59327 -14.32670 -14.14483 -13.96860 -13.66065 -13.55139 -13.53583 -13.42473 -13.06254 -12.97692 -12.91146 -12.69255 -12.65923 -12.46454 -12.32151 -12.13046 -11.96880 -11.78885 -11.57716 -11.54244 -11.39801 -11.18854 -11.11794 -10.86233 -10.58600 -10.57114 -10.22141 -10.09837 -10.03708 -8.51867 -6.02272 1.35834 1.42342 1.54867 1.58682 1.77406 1.89975 2.28712 2.99021 3.15302 3.17019 3.67294 3.75460 3.83790 3.93357 4.14918 4.18801 4.20782 4.24878 4.25726 4.29235 4.38240 4.42974 4.43370 4.49459 4.53969 4.66240 4.70544 4.76283 4.85843 4.94532 4.96080 5.00605 5.04756 5.08672 5.11160 5.14686 5.23430 5.25363 5.26273 5.37659 5.42216 5.46133 5.46457 5.51434 5.60122 5.68436 5.89658 5.90856 6.24650 6.45996 6.56615 7.02404 7.18898 7.43325 7.92849 8.65076 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.002032 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.650799 B =13778.012289 C =14216.832581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.068 4.068 5 H 0.097 0.903 6 C -0.115 4.115 7 C -0.109 4.109 8 C -0.084 4.084 9 H 0.066 0.934 10 C -0.142 4.142 11 C -0.135 4.135 12 C 0.085 3.915 13 H 0.079 0.921 14 O -0.357 6.357 15 C 0.047 3.953 16 C 0.512 3.488 17 O -0.564 6.564 18 N -0.707 5.707 19 C 0.124 3.876 20 C 0.434 3.566 21 O -0.623 6.623 22 N -0.560 5.560 23 C -0.336 4.336 24 H 0.087 0.913 25 C -0.012 4.012 26 N -0.917 5.917 27 Si 0.998 3.002 28 H -0.270 1.270 29 H -0.272 1.272 30 H -0.269 1.269 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.028 0.972 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.415 0.585 50 H 0.091 0.909 51 H 0.092 0.908 52 H 0.398 0.602 53 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.321 5.817 20.337 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.086 4.086 5 H 0.115 0.885 6 C -0.152 4.152 7 C -0.147 4.147 8 C -0.103 4.103 9 H 0.085 0.915 10 C -0.199 4.199 11 C -0.173 4.173 12 C 0.028 3.972 13 H 0.097 0.903 14 O -0.275 6.275 15 C -0.033 4.033 16 C 0.299 3.701 17 O -0.442 6.442 18 N -0.363 5.363 19 C -0.004 4.004 20 C 0.221 3.779 21 O -0.511 6.511 22 N -0.196 5.196 23 C -0.466 4.466 24 H 0.105 0.895 25 C -0.212 4.212 26 N -0.557 5.557 27 Si 0.821 3.179 28 H -0.195 1.195 29 H -0.197 1.197 30 H -0.193 1.193 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.118 0.882 48 H 0.115 0.885 49 H 0.253 0.747 50 H 0.109 0.891 51 H 0.110 0.890 52 H 0.232 0.768 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.517 5.515 20.139 27.909 hybrid contribution 1.191 -0.074 -0.833 1.455 sum -17.326 5.442 19.306 26.505 Atomic orbital electron populations 1.21859 0.94759 1.01751 1.01873 1.21063 0.96018 0.96074 0.97895 1.21884 1.00871 0.95598 1.02048 1.21260 0.92415 0.96240 0.98663 0.88475 1.21604 1.00140 0.95212 0.98257 1.21526 0.94644 1.00273 0.98232 1.21005 0.95889 0.95753 0.97624 0.91538 1.22029 1.00106 0.98090 0.99699 1.22112 1.00763 0.96104 0.98315 1.22424 0.94793 0.95612 0.84391 0.90315 1.88178 1.34400 1.59594 1.45364 1.22201 0.89464 0.97985 0.93642 1.20877 0.80096 0.83749 0.85335 1.90697 1.52838 1.33542 1.67169 1.45594 1.22480 1.39602 1.28647 1.20727 0.93798 0.96818 0.89059 1.20395 0.88536 0.85840 0.83144 1.90468 1.66249 1.34174 1.60184 1.41864 1.19680 1.33452 1.24575 1.19742 0.97368 1.18724 1.10734 0.89472 1.26151 1.03199 0.95935 0.95961 1.69689 1.40771 1.24801 1.20439 0.84858 0.76906 0.78653 0.77519 1.19544 1.19702 1.19348 0.91676 0.93210 0.92711 0.93065 0.92879 0.93215 0.91474 0.91335 0.93122 0.92590 0.90726 0.95025 0.95242 0.90264 0.89179 0.91912 0.88203 0.88463 0.74692 0.89068 0.88997 0.76752 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.84 71.98 0.64 -1.36 16 2 C -0.09 -1.46 2.36 -10.79 -0.03 -1.49 16 3 C -0.15 -2.00 8.84 71.99 0.64 -1.36 16 4 C -0.07 -0.95 1.61 -10.80 -0.02 -0.97 16 5 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 6 C -0.11 -1.89 4.51 30.59 0.14 -1.75 16 7 C -0.11 -1.61 5.45 30.59 0.17 -1.45 16 8 C -0.08 -1.41 3.20 -10.79 -0.03 -1.44 16 9 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 10 C -0.14 -3.32 7.81 71.98 0.56 -2.75 16 11 C -0.14 -1.88 5.27 30.61 0.16 -1.72 16 12 C 0.08 1.30 1.99 30.61 0.06 1.36 16 13 H 0.08 0.97 6.07 -2.39 -0.01 0.95 16 14 O -0.36 -7.80 4.64 -129.94 -0.60 -8.40 16 15 C 0.05 0.98 6.23 71.23 0.44 1.42 16 16 C 0.51 15.46 7.91 87.65 0.69 16.15 16 17 O -0.56 -21.37 16.50 15.99 0.26 -21.11 16 18 N -0.71 -22.38 5.53 -466.78 -2.58 -24.96 16 19 C 0.12 4.51 6.15 85.63 0.53 5.03 16 20 C 0.43 19.84 7.85 87.66 0.69 20.53 16 21 O -0.62 -31.62 15.24 -3.07 -0.05 -31.67 16 22 N -0.56 -28.11 5.29 -306.98 -1.62 -29.73 16 23 C -0.34 -18.46 9.68 84.04 0.81 -17.65 16 24 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 25 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 26 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 27 Si 1.00 41.62 29.55 68.60 2.03 43.65 16 28 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 29 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 30 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.78 6.43 -2.39 -0.02 0.76 16 34 H 0.05 1.14 7.68 -2.39 -0.02 1.12 16 35 H 0.05 0.72 6.43 -2.39 -0.02 0.70 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 1.00 6.43 -2.39 -0.02 0.98 16 39 H 0.05 1.15 5.95 -2.39 -0.01 1.13 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.03 0.79 8.09 -2.39 -0.02 0.77 16 43 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 2.17 3.79 -2.39 -0.01 2.16 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 0.90 7.88 -2.38 -0.02 0.88 16 47 H 0.10 1.63 8.09 -2.38 -0.02 1.61 16 48 H 0.10 1.65 7.88 -2.38 -0.02 1.63 16 49 H 0.41 12.54 7.44 -92.70 -0.69 11.85 16 50 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 51 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 52 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 53 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -66.59 407.54 3.14 -63.45 By element: Atomic # 1 Polarization: 45.41 SS G_CDS: -0.50 Total: 44.91 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.92 Total: 12.41 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -3.92 Total: -103.24 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -0.39 Total: -61.18 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -66.59 3.14 -63.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343517133.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.373 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds