Wall clock time and date at job start Tue Mar 31 2020 23:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47106 * 60.00162 * 7 6 4 9 9 H 1.09002 * 109.47596 * 60.00070 * 8 7 6 10 10 C 1.53000 * 109.47233 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.47128 * 300.00123 * 8 7 6 12 12 C 1.52997 * 109.46978 * 59.99726 * 11 8 7 13 13 H 1.09000 * 109.47140 * 180.02562 * 12 11 8 14 14 O 1.42895 * 109.47267 * 60.00316 * 12 11 8 15 15 C 1.42902 * 114.00177 * 89.99757 * 14 12 11 16 16 C 1.50699 * 109.47118 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00314 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99806 * 179.97438 * 16 15 14 19 19 C 1.46500 * 120.00034 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47571 * 180.02562 * 19 18 16 21 21 O 1.21297 * 119.99565 * 0.02562 * 20 19 18 22 22 N 1.34770 * 120.00782 * 179.97438 * 20 19 18 23 23 C 1.37101 * 120.00383 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99973 * 0.02562 * 23 22 20 25 25 C 1.38955 * 119.99804 * 180.02562 * 23 22 20 26 26 N 1.31410 * 119.99959 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99875 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47174 * 89.99828 * 27 25 23 29 29 H 1.48500 * 109.47104 * 209.99911 * 27 25 23 30 30 H 1.48500 * 109.46888 * 330.00205 * 27 25 23 31 31 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 32 32 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 33 33 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 34 34 H 1.08992 * 109.47514 * 240.00129 * 2 1 3 35 35 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 36 36 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 37 37 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 38 38 H 1.09002 * 109.47153 * 300.00319 * 6 4 2 39 39 H 1.08998 * 109.47533 * 59.99948 * 6 4 2 40 40 H 1.09002 * 109.47103 * 300.00247 * 7 6 4 41 41 H 1.08996 * 109.47747 * 179.97438 * 7 6 4 42 42 H 1.09001 * 109.47194 * 180.02562 * 10 8 7 43 43 H 1.09004 * 109.46724 * 299.99348 * 10 8 7 44 44 H 1.08992 * 109.47399 * 59.99834 * 10 8 7 45 45 H 1.09002 * 109.47097 * 299.99925 * 11 8 7 46 46 H 1.08998 * 109.47844 * 180.02562 * 11 8 7 47 47 H 1.08993 * 109.47199 * 300.00243 * 15 14 12 48 48 H 1.08997 * 109.47063 * 60.00040 * 15 14 12 49 49 H 0.97001 * 120.00308 * 0.02562 * 18 16 15 50 50 H 1.08996 * 109.47464 * 300.00272 * 19 18 16 51 51 H 1.08997 * 109.47173 * 60.00617 * 19 18 16 52 52 H 0.97007 * 119.99779 * 0.02562 * 22 20 19 53 53 H 0.97005 * 120.00042 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2074 2.1393 6 6 3.5699 -0.7207 1.2497 7 6 4.0799 -1.4424 2.4985 8 6 3.5705 -2.8851 2.4976 9 1 3.9342 -3.3984 1.6075 10 6 4.0800 -3.6067 3.7469 11 6 2.0405 -2.8857 2.4973 12 6 1.5305 -2.1639 1.2484 13 1 0.4405 -2.1639 1.2484 14 8 2.0073 -2.8367 0.0814 15 6 1.1356 -3.8645 -0.3940 16 6 1.7344 -4.5034 -1.6205 17 8 2.8025 -4.1171 -2.0455 18 7 1.0832 -5.5048 -2.2446 19 6 1.6655 -6.1264 -3.4366 20 6 0.7462 -7.2102 -3.9380 21 8 -0.2934 -7.4404 -3.3570 22 7 1.0786 -7.9229 -5.0325 23 6 0.2420 -8.9086 -5.4889 24 1 -0.6837 -9.1135 -4.9716 25 6 0.5850 -9.6437 -6.6170 26 7 1.7115 -9.3946 -7.2461 27 14 -0.5552 -10.9861 -7.2393 28 1 -1.5156 -10.4078 -8.2131 29 1 0.2447 -12.0466 -7.9032 30 1 -1.3011 -11.5712 -6.0962 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.1299 1.4426 0.0005 38 1 3.9337 -1.2342 0.3597 39 1 3.9330 0.3071 1.2498 40 1 3.7162 -0.9292 3.3887 41 1 5.1699 -1.4424 2.4986 42 1 3.7175 -4.6346 3.7460 43 1 5.1701 -3.6063 3.7475 44 1 3.7160 -3.0934 4.6368 45 1 1.6768 -2.3725 3.3875 46 1 1.6775 -3.9134 2.4971 47 1 1.0064 -4.6189 0.3819 48 1 0.1671 -3.4320 -0.6452 49 1 0.2290 -5.8141 -1.9045 50 1 1.7951 -5.3725 -4.2130 51 1 2.6338 -6.5587 -3.1847 52 1 1.9098 -7.7386 -5.4973 53 1 1.9512 -9.9081 -8.0334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343517136.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:24 Heat of formation + Delta-G solvation = -176.597527 kcal Electronic energy + Delta-G solvation = -30432.625427 eV Core-core repulsion = 26302.005325 eV Total energy + Delta-G solvation = -4130.620102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.24979 -40.68941 -39.81480 -37.30107 -36.48919 -36.25065 -35.29997 -33.39366 -31.95393 -31.35994 -30.14409 -28.00182 -27.94998 -27.00590 -26.09961 -23.23583 -22.85827 -21.69331 -21.40616 -20.62518 -20.53969 -20.08863 -18.69452 -17.64989 -17.32470 -17.23341 -16.74907 -16.46991 -16.37667 -16.20034 -15.76513 -15.61600 -15.25923 -14.98789 -14.89743 -14.66276 -14.34355 -14.04204 -13.96774 -13.68381 -13.55236 -13.50746 -13.45516 -13.05283 -13.02596 -12.91852 -12.88569 -12.63964 -12.46630 -12.41943 -12.13067 -11.89770 -11.87004 -11.77955 -11.57877 -11.40270 -11.28981 -11.14752 -10.90979 -10.62143 -10.57741 -10.32502 -10.20706 -10.09672 -8.52033 -6.02469 1.35743 1.42328 1.54326 1.54957 1.74356 1.89435 2.28501 2.97140 3.15068 3.15502 3.64880 3.74475 3.82538 3.88892 4.07081 4.13457 4.17216 4.22503 4.24155 4.26679 4.34089 4.41560 4.41875 4.49575 4.52833 4.64196 4.67661 4.78734 4.82907 4.84185 4.91415 4.96102 4.99209 5.02357 5.07743 5.12000 5.15362 5.22738 5.24032 5.37444 5.38186 5.42156 5.44166 5.45377 5.56680 5.60576 5.70863 5.90417 6.21796 6.45403 6.53890 7.02079 7.15553 7.42818 7.92346 8.64889 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.001984 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.808484 B =14106.209528 C =14760.554984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.068 4.068 5 H 0.099 0.901 6 C -0.112 4.112 7 C -0.108 4.108 8 C -0.090 4.090 9 H 0.046 0.954 10 C -0.144 4.144 11 C -0.134 4.134 12 C 0.084 3.916 13 H 0.081 0.919 14 O -0.369 6.369 15 C 0.050 3.950 16 C 0.512 3.488 17 O -0.569 6.569 18 N -0.705 5.705 19 C 0.123 3.877 20 C 0.434 3.566 21 O -0.622 6.622 22 N -0.560 5.560 23 C -0.337 4.337 24 H 0.088 0.912 25 C -0.012 4.012 26 N -0.917 5.917 27 Si 0.998 3.002 28 H -0.270 1.270 29 H -0.272 1.272 30 H -0.269 1.269 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.416 0.584 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.398 0.602 53 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 19.013 21.194 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.086 4.086 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.145 4.145 8 C -0.108 4.108 9 H 0.064 0.936 10 C -0.201 4.201 11 C -0.171 4.171 12 C 0.027 3.973 13 H 0.099 0.901 14 O -0.288 6.288 15 C -0.029 4.029 16 C 0.299 3.701 17 O -0.448 6.448 18 N -0.361 5.361 19 C -0.005 4.005 20 C 0.221 3.779 21 O -0.510 6.510 22 N -0.195 5.195 23 C -0.466 4.466 24 H 0.106 0.894 25 C -0.212 4.212 26 N -0.557 5.557 27 Si 0.821 3.179 28 H -0.195 1.195 29 H -0.197 1.197 30 H -0.193 1.193 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.254 0.746 50 H 0.110 0.890 51 H 0.110 0.890 52 H 0.233 0.767 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.887 19.090 21.003 28.396 hybrid contribution -0.300 -1.085 -0.925 1.457 sum 0.587 18.005 20.078 26.975 Atomic orbital electron populations 1.21885 0.94707 1.01641 1.02171 1.21069 0.96043 0.96247 0.97798 1.21858 1.01021 0.95361 1.01980 1.21280 0.95703 0.92887 0.98768 0.88247 1.21530 0.95208 1.00297 0.97886 1.21546 0.99979 0.94857 0.98123 1.20999 0.95525 0.96385 0.97929 0.93561 1.21809 1.00786 1.00022 0.97505 1.22103 0.95766 1.01045 0.98196 1.22457 0.98435 0.92160 0.84223 0.90142 1.88049 1.45832 1.49615 1.45297 1.22206 0.94171 0.92857 0.93685 1.20907 0.84703 0.79134 0.85346 1.90696 1.23398 1.63377 1.67306 1.45577 1.25696 1.36185 1.28671 1.20741 0.96059 0.94668 0.89033 1.20368 0.88396 0.85964 0.83180 1.90469 1.28216 1.72152 1.60212 1.41862 1.21766 1.31326 1.24575 1.19747 1.03688 1.12376 1.10787 0.89442 1.26156 0.98364 1.00749 0.95968 1.69684 1.23387 1.42215 1.20389 0.84854 0.77612 0.77112 0.78334 1.19521 1.19711 1.19344 0.91313 0.93122 0.92921 0.93297 0.93130 0.91526 0.92764 0.94081 0.91106 0.90622 0.92598 0.93187 0.93068 0.91512 0.89111 0.91882 0.88154 0.87939 0.74572 0.88992 0.89019 0.76747 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.84 71.98 0.64 -1.41 16 2 C -0.09 -1.54 2.36 -10.79 -0.03 -1.57 16 3 C -0.15 -2.05 8.84 71.98 0.64 -1.41 16 4 C -0.07 -1.02 1.61 -10.79 -0.02 -1.03 16 5 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 6 C -0.11 -1.95 4.70 30.59 0.14 -1.80 16 7 C -0.11 -1.65 5.20 30.59 0.16 -1.49 16 8 C -0.09 -1.55 2.58 -10.79 -0.03 -1.58 16 9 H 0.05 1.12 7.68 -2.39 -0.02 1.10 16 10 C -0.14 -2.10 9.19 71.98 0.66 -1.44 16 11 C -0.13 -1.92 4.91 30.59 0.15 -1.77 16 12 C 0.08 1.36 2.00 30.59 0.06 1.43 16 13 H 0.08 1.03 6.07 -2.39 -0.01 1.02 16 14 O -0.37 -8.77 7.49 -129.94 -0.97 -9.75 16 15 C 0.05 1.10 6.23 71.24 0.44 1.54 16 16 C 0.51 15.95 7.91 87.66 0.69 16.64 16 17 O -0.57 -22.52 16.50 16.01 0.26 -22.25 16 18 N -0.71 -22.61 5.53 -466.80 -2.58 -25.19 16 19 C 0.12 4.51 6.15 85.63 0.53 5.03 16 20 C 0.43 19.89 7.85 87.66 0.69 20.58 16 21 O -0.62 -31.62 15.24 -3.08 -0.05 -31.67 16 22 N -0.56 -28.12 5.29 -306.98 -1.62 -29.75 16 23 C -0.34 -18.48 9.68 84.04 0.81 -17.67 16 24 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 25 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 26 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 27 Si 1.00 41.60 29.55 68.60 2.03 43.63 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 30 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.73 6.43 -2.39 -0.02 0.72 16 34 H 0.05 1.14 7.68 -2.39 -0.02 1.12 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.80 6.43 -2.39 -0.02 0.78 16 38 H 0.04 1.00 7.68 -2.39 -0.02 0.98 16 39 H 0.07 1.07 6.43 -2.39 -0.02 1.06 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.06 0.92 7.87 -2.39 -0.02 0.90 16 47 H 0.10 1.72 7.87 -2.39 -0.02 1.70 16 48 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 49 H 0.42 12.62 7.44 -92.71 -0.69 11.93 16 50 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 51 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 52 H 0.40 19.33 7.90 -92.70 -0.73 18.60 16 53 H 0.28 13.94 8.31 -92.70 -0.77 13.17 16 Total: -1.00 -68.13 416.40 2.84 -65.29 By element: Atomic # 1 Polarization: 44.86 SS G_CDS: -0.52 Total: 44.35 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 6.01 Total: 13.89 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -3.92 Total: -103.48 kcal Atomic # 8 Polarization: -62.92 SS G_CDS: -0.76 Total: -63.67 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -68.13 2.84 -65.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343517136.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.311 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds