Wall clock time and date at job start Tue Mar 31 2020 23:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.48996 * 2 1 4 4 C 1.53091 * 109.47745 * 239.97780 * 2 1 3 5 5 C 1.53178 * 109.16238 * 182.40788 * 4 2 1 6 6 H 1.09003 * 109.62086 * 176.89051 * 5 4 2 7 7 C 1.50699 * 109.54271 * 297.11570 * 5 4 2 8 8 O 1.21281 * 120.00185 * 22.60275 * 7 5 4 9 9 N 1.34785 * 119.99679 * 202.60585 * 7 5 4 10 10 C 1.46491 * 120.00184 * 7.48252 * 9 7 5 11 11 C 1.50695 * 109.47505 * 97.35065 * 10 9 7 12 12 H 1.07997 * 120.00233 * 113.86446 * 11 10 9 13 13 C 1.37879 * 119.99955 * 293.86125 * 11 10 9 14 14 N 1.31520 * 119.99703 * 14.38107 * 13 11 10 15 15 Si 1.86799 * 120.00231 * 194.38220 * 13 11 10 16 16 H 1.48496 * 109.47267 * 89.99748 * 15 13 11 17 17 H 1.48502 * 109.46903 * 210.00202 * 15 13 11 18 18 H 1.48508 * 109.46863 * 329.99707 * 15 13 11 19 19 C 1.46497 * 119.99615 * 187.47942 * 9 7 5 20 20 C 1.53009 * 109.47281 * 276.19634 * 19 9 7 21 21 N 1.46903 * 109.47049 * 180.02562 * 20 19 9 22 22 C 1.47014 * 110.99740 * 293.62997 * 21 20 19 23 23 C 1.53104 * 109.25496 * 177.60883 * 22 21 20 24 24 O 1.43017 * 109.25458 * 56.85377 * 23 22 21 25 25 C 1.43023 * 113.73720 * 301.32352 * 24 23 22 26 26 C 1.47013 * 110.99494 * 169.99771 * 21 20 19 27 27 C 1.53179 * 109.03729 * 56.97734 * 5 4 2 28 28 C 1.53085 * 109.16369 * 303.02544 * 27 5 4 29 29 O 1.42894 * 109.47924 * 120.03655 * 2 1 3 30 30 H 1.09003 * 109.47010 * 299.96388 * 1 2 3 31 31 H 1.09001 * 109.47509 * 59.96759 * 1 2 3 32 32 H 1.09005 * 109.47051 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.52492 * 62.50229 * 4 2 1 34 34 H 1.09000 * 109.52501 * 302.31162 * 4 2 1 35 35 H 1.09003 * 109.47327 * 337.34355 * 10 9 7 36 36 H 1.09009 * 109.47207 * 217.35295 * 10 9 7 37 37 H 0.97005 * 119.99568 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47506 * 36.19196 * 19 9 7 39 39 H 1.08995 * 109.47458 * 156.19868 * 19 9 7 40 40 H 1.09000 * 109.46493 * 300.00182 * 20 19 9 41 41 H 1.08997 * 109.47195 * 59.99682 * 20 19 9 42 42 H 1.09001 * 109.50985 * 297.54292 * 22 21 20 43 43 H 1.08999 * 109.50292 * 57.67839 * 22 21 20 44 44 H 1.08993 * 109.50587 * 296.91777 * 23 22 21 45 45 H 1.08992 * 109.50425 * 176.78303 * 23 22 21 46 46 H 1.08996 * 109.50789 * 298.73975 * 25 24 23 47 47 H 1.08994 * 109.50069 * 178.60710 * 25 24 23 48 48 H 1.08996 * 109.51154 * 302.32347 * 26 21 20 49 49 H 1.09007 * 109.50877 * 62.41609 * 26 21 20 50 50 H 1.09007 * 109.52036 * 62.92712 * 27 5 4 51 51 H 1.08998 * 109.52333 * 183.04888 * 27 5 4 52 52 H 1.08999 * 109.48093 * 177.58715 * 28 27 5 53 53 H 1.09001 * 109.48141 * 297.61080 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5710 -0.7708 -1.2123 6 1 3.9405 -1.3316 -2.0709 7 6 4.1211 0.6317 -1.2517 8 8 3.4306 1.5641 -0.8984 9 7 5.3804 0.8499 -1.6798 10 6 6.1575 -0.2483 -2.2596 11 6 6.0730 -0.1847 -3.7628 12 1 6.9566 0.0319 -4.3447 13 6 4.8674 -0.4030 -4.3953 14 7 3.7491 -0.3852 -3.7033 15 14 4.8225 -0.7240 -6.2349 16 1 4.9353 -2.1833 -6.4857 17 1 3.5409 -0.2233 -6.7936 18 1 5.9556 -0.0204 -6.8880 19 6 5.9719 2.1852 -1.5652 20 6 5.5459 3.0363 -2.7632 21 7 6.1395 4.3751 -2.6486 22 6 5.5839 5.1009 -1.4972 23 6 6.2713 6.4640 -1.3800 24 8 6.1047 7.1830 -2.6050 25 6 6.6352 6.5052 -3.7472 26 6 5.9515 5.1426 -3.8883 27 6 4.0176 -1.4601 0.0807 28 6 3.4307 -0.7095 1.2789 29 8 2.0065 -0.6743 1.1662 30 1 -0.3633 0.5133 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7147 -0.1841 -2.1399 34 1 1.6442 -1.7373 -1.2711 35 1 5.7557 -1.2004 -1.9129 36 1 7.1990 -0.1593 -1.9501 37 1 2.9009 -0.5385 -4.1484 38 1 5.6289 2.6568 -0.6443 39 1 7.0584 2.1010 -1.5475 40 1 5.8889 2.5647 -3.6841 41 1 4.4593 3.1205 -2.7811 42 1 4.5128 5.2445 -1.6398 43 1 5.7568 4.5267 -0.5871 44 1 7.3337 6.3201 -1.1840 45 1 5.8228 7.0286 -0.5627 46 1 7.7082 6.3626 -3.6200 47 1 6.4499 7.0997 -4.6417 48 1 6.3927 4.5988 -4.7236 49 1 4.8862 5.2862 -4.0696 50 1 3.6613 -2.4902 0.0861 51 1 5.1059 -1.4508 0.1413 52 1 3.7099 -1.2206 2.2002 53 1 3.8194 0.3087 1.2958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345316496.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:42 Heat of formation + Delta-G solvation = -129.021583 kcal Electronic energy + Delta-G solvation = -33148.274192 eV Core-core repulsion = 29019.717138 eV Total energy + Delta-G solvation = -4128.557054 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.44861 -40.52864 -39.13146 -37.16440 -36.35486 -34.60177 -33.98354 -33.49634 -32.22456 -30.95850 -29.19573 -28.60180 -27.27705 -25.25005 -25.01886 -24.67601 -23.63390 -22.76386 -21.70132 -21.35825 -19.43686 -18.43345 -17.70776 -17.43773 -17.13551 -17.06854 -16.86267 -16.74063 -16.23352 -16.14542 -15.96410 -15.82938 -15.57444 -15.12312 -14.97981 -14.58931 -14.33566 -14.05327 -13.96071 -13.82992 -13.52319 -13.35205 -13.19904 -13.14354 -12.88026 -12.83448 -12.70132 -12.66234 -12.51736 -12.41913 -12.28553 -11.86352 -11.79717 -11.71924 -11.63214 -11.46755 -11.38733 -11.19961 -10.74741 -10.63048 -10.33006 -9.64113 -9.49096 -9.01215 -8.04844 -6.27864 1.38283 1.45643 1.49500 2.21988 2.39787 2.54273 2.85689 2.97467 2.98605 3.27488 3.86543 3.93138 4.01547 4.02913 4.05172 4.14304 4.16366 4.17790 4.22400 4.30447 4.44807 4.49129 4.49738 4.52730 4.59022 4.63001 4.67577 4.70587 4.79319 4.80174 4.83587 4.87106 4.90245 4.93218 4.99362 5.03857 5.06546 5.13135 5.14620 5.26588 5.34067 5.38498 5.49986 5.67450 5.82219 5.92584 5.94643 6.13681 6.16190 6.21593 6.43461 6.76844 7.13369 7.41491 7.87807 8.79993 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009101 B = 0.004757 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.684697 B = 5884.624597 C = 7741.972645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.062 3.938 3 H 0.073 0.927 4 C -0.100 4.100 5 C -0.100 4.100 6 H 0.133 0.867 7 C 0.561 3.439 8 O -0.617 6.617 9 N -0.593 5.593 10 C 0.226 3.774 11 C -0.545 4.545 12 H 0.054 0.946 13 C 0.044 3.956 14 N -0.871 5.871 15 Si 0.937 3.063 16 H -0.272 1.272 17 H -0.298 1.298 18 H -0.277 1.277 19 C 0.141 3.859 20 C 0.072 3.928 21 N -0.531 5.531 22 C 0.017 3.983 23 C 0.070 3.930 24 O -0.404 6.404 25 C 0.071 3.929 26 C 0.015 3.985 27 C -0.146 4.146 28 C 0.065 3.935 29 O -0.396 6.396 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.066 0.934 41 H -0.004 1.004 42 H 0.016 0.984 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.115 0.885 46 H 0.071 0.929 47 H 0.117 0.883 48 H 0.088 0.912 49 H 0.020 0.980 50 H 0.082 0.918 51 H 0.077 0.923 52 H 0.113 0.887 53 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 4.269 4.926 7.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.005 3.995 3 H 0.091 0.909 4 C -0.138 4.138 5 C -0.121 4.121 6 H 0.150 0.850 7 C 0.353 3.647 8 O -0.502 6.502 9 N -0.322 5.322 10 C 0.106 3.894 11 C -0.584 4.584 12 H 0.073 0.927 13 C -0.159 4.159 14 N -0.509 5.509 15 Si 0.765 3.235 16 H -0.198 1.198 17 H -0.225 1.225 18 H -0.202 1.202 19 C 0.017 3.983 20 C -0.057 4.057 21 N -0.257 5.257 22 C -0.111 4.111 23 C -0.007 4.007 24 O -0.323 6.323 25 C -0.006 4.006 26 C -0.113 4.113 27 C -0.184 4.184 28 C -0.012 4.012 29 O -0.316 6.316 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.015 0.985 42 H 0.034 0.966 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.133 0.867 46 H 0.090 0.910 47 H 0.135 0.865 48 H 0.107 0.893 49 H 0.038 0.962 50 H 0.101 0.899 51 H 0.095 0.905 52 H 0.131 0.869 53 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.188 4.735 5.267 7.767 hybrid contribution -1.011 -0.350 -1.900 2.181 sum 2.177 4.384 3.367 5.941 Atomic orbital electron populations 1.21707 0.92731 1.02569 1.02152 1.22652 0.95178 0.97082 0.84549 0.90928 1.21655 0.94932 0.99673 0.97527 1.21665 0.95915 0.94482 1.00024 0.85045 1.20401 0.80552 0.90870 0.72894 1.90361 1.58584 1.47051 1.54234 1.48542 1.14610 1.10039 1.59046 1.19508 0.91162 0.86592 0.92106 1.21634 0.94862 1.48915 0.92977 0.92740 1.25511 0.95601 0.94006 1.00818 1.70055 0.97808 1.47192 1.35842 0.85900 0.76572 0.78634 0.82394 1.19793 1.22511 1.20155 1.20998 0.97938 0.83417 0.95917 1.22155 0.94755 0.88419 1.00324 1.62325 1.57179 1.02378 1.03808 1.22848 0.96414 0.96694 0.95148 1.22763 1.00830 0.90191 0.86873 1.87932 1.81860 1.45832 1.16644 1.22751 0.97744 0.90730 0.89350 1.22850 0.98897 0.96462 0.93124 1.22247 1.01314 1.00360 0.94467 1.22562 0.80987 0.98735 0.98915 1.87744 1.21447 1.78403 1.43970 0.91855 0.91338 0.91697 0.93029 0.92060 0.93591 0.93874 0.92835 0.92831 0.89823 0.91549 0.98520 0.96553 0.89335 0.90923 0.86671 0.91039 0.86510 0.89332 0.96160 0.89937 0.90468 0.86942 0.95489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.56 71.98 0.69 -3.54 16 2 C 0.06 2.39 2.96 30.63 0.09 2.48 16 3 H 0.07 3.27 5.17 -2.39 -0.01 3.26 16 4 C -0.10 -3.99 4.50 30.68 0.14 -3.85 16 5 C -0.10 -4.09 1.18 -11.42 -0.01 -4.10 16 6 H 0.13 5.95 4.18 -2.39 -0.01 5.94 16 7 C 0.56 25.18 4.33 87.66 0.38 25.56 16 8 O -0.62 -30.56 12.44 -3.03 -0.04 -30.60 16 9 N -0.59 -25.31 2.36 -826.16 -1.95 -27.26 16 10 C 0.23 9.52 5.57 85.63 0.48 10.00 16 11 C -0.55 -25.47 8.73 25.60 0.22 -25.24 16 12 H 0.05 2.58 7.86 -2.91 -0.02 2.55 16 13 C 0.04 2.08 5.42 84.65 0.46 2.53 16 14 N -0.87 -42.35 6.98 21.45 0.15 -42.20 16 15 Si 0.94 39.56 29.56 68.60 2.03 41.59 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 19 C 0.14 5.52 5.26 86.38 0.45 5.97 16 20 C 0.07 2.93 5.21 86.31 0.45 3.38 16 21 N -0.53 -17.62 4.73 -895.17 -4.23 -21.85 16 22 C 0.02 0.53 5.44 86.32 0.47 1.00 16 23 C 0.07 1.68 7.01 72.02 0.50 2.19 16 24 O -0.40 -10.86 10.83 -148.98 -1.61 -12.47 16 25 C 0.07 1.68 7.01 72.02 0.50 2.18 16 26 C 0.02 0.45 5.64 86.32 0.49 0.94 16 27 C -0.15 -4.94 5.40 30.68 0.17 -4.77 16 28 C 0.06 2.17 6.59 72.01 0.47 2.64 16 29 O -0.40 -14.65 10.41 -148.98 -1.55 -16.20 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.05 2.29 7.56 -2.38 -0.02 2.27 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 1.94 5.16 -2.39 -0.01 1.93 16 36 H 0.04 1.65 7.98 -2.38 -0.02 1.63 16 37 H 0.26 12.73 8.23 -92.70 -0.76 11.96 16 38 H 0.05 2.10 6.11 -2.39 -0.01 2.08 16 39 H 0.08 2.97 7.91 -2.39 -0.02 2.95 16 40 H 0.07 2.96 7.40 -2.39 -0.02 2.94 16 41 H 0.00 -0.18 7.83 -2.39 -0.02 -0.19 16 42 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.09 2.64 6.38 -2.39 -0.02 2.63 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.09 2.55 8.09 -2.39 -0.02 2.53 16 49 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 50 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 51 H 0.08 2.46 7.53 -2.39 -0.02 2.44 16 52 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 53 H 0.03 1.01 7.09 -2.39 -0.02 0.99 16 Total: -1.00 -57.01 390.61 -0.36 -57.37 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.89 Total: 34.25 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 5.95 Total: 17.36 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -6.03 Total: -91.31 kcal Atomic # 8 Polarization: -56.08 SS G_CDS: -3.20 Total: -59.28 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -57.01 -0.36 -57.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345316496.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.647 kcal (2) G-P(sol) polarization free energy of solvation -57.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds