Wall clock time and date at job start Tue Mar 31 2020 23:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.49257 * 2 1 4 4 C 1.53093 * 109.48395 * 120.03491 * 2 1 3 5 5 C 1.53180 * 109.16754 * 177.58845 * 4 2 1 6 6 H 1.09006 * 109.61267 * 62.92721 * 5 4 2 7 7 C 1.50700 * 109.54478 * 183.14899 * 5 4 2 8 8 O 1.21279 * 119.99765 * 16.29996 * 7 5 4 9 9 N 1.34780 * 119.99906 * 196.30143 * 7 5 4 10 10 C 1.46497 * 119.99731 * 4.50438 * 9 7 5 11 11 C 1.50706 * 109.46971 * 83.87087 * 10 9 7 12 12 H 1.07998 * 119.99805 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99910 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00138 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00199 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47290 * 89.99357 * 15 13 11 17 17 H 1.48499 * 109.47191 * 209.99896 * 15 13 11 18 18 H 1.48506 * 109.47000 * 329.99252 * 15 13 11 19 19 C 1.46499 * 119.99709 * 184.50496 * 9 7 5 20 20 C 1.52999 * 109.46942 * 89.99972 * 19 9 7 21 21 N 1.46905 * 109.47244 * 179.97438 * 20 19 9 22 22 C 1.47014 * 111.00068 * 293.63891 * 21 20 19 23 23 C 1.53096 * 109.25714 * 177.60336 * 22 21 20 24 24 O 1.43010 * 109.25629 * 56.84853 * 23 22 21 25 25 C 1.43018 * 113.74266 * 301.32789 * 24 23 22 26 26 C 1.47008 * 111.00080 * 169.99879 * 21 20 19 27 27 C 1.53175 * 109.03711 * 303.01998 * 5 4 2 28 28 C 1.53096 * 109.16511 * 56.97454 * 27 5 4 29 29 O 1.42901 * 109.41584 * 302.39594 * 28 27 5 30 30 H 1.09001 * 109.47528 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46783 * 300.02431 * 1 2 3 32 32 H 1.08997 * 109.47308 * 60.02463 * 1 2 3 33 33 H 1.09004 * 109.52138 * 297.49809 * 4 2 1 34 34 H 1.08997 * 109.52279 * 57.67981 * 4 2 1 35 35 H 1.09004 * 109.46880 * 203.86262 * 10 9 7 36 36 H 1.08999 * 109.47434 * 323.86714 * 10 9 7 37 37 H 0.96999 * 120.00062 * 180.02562 * 14 13 11 38 38 H 1.08994 * 109.46769 * 210.00141 * 19 9 7 39 39 H 1.08996 * 109.47185 * 330.00297 * 19 9 7 40 40 H 1.08999 * 109.47261 * 300.00102 * 20 19 9 41 41 H 1.09005 * 109.47143 * 60.00154 * 20 19 9 42 42 H 1.09000 * 109.50507 * 297.54176 * 22 21 20 43 43 H 1.09002 * 109.50385 * 57.66780 * 22 21 20 44 44 H 1.09001 * 109.50708 * 296.91373 * 23 22 21 45 45 H 1.09005 * 109.50433 * 176.78612 * 23 22 21 46 46 H 1.08998 * 109.50499 * 298.73837 * 25 24 23 47 47 H 1.08994 * 109.50622 * 178.60821 * 25 24 23 48 48 H 1.08996 * 109.51242 * 302.32989 * 26 21 20 49 49 H 1.09007 * 109.50337 * 62.46533 * 26 21 20 50 50 H 1.09006 * 109.52068 * 297.07441 * 27 5 4 51 51 H 1.09001 * 109.52338 * 176.88441 * 27 5 4 52 52 H 1.08995 * 109.48074 * 182.40997 * 28 27 5 53 53 H 1.09006 * 109.48352 * 62.38286 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7224 1.2495 5 6 3.5711 -0.7711 1.2120 6 1 3.9703 0.2428 1.2415 7 6 4.0800 -1.5478 2.3989 8 8 3.3250 -2.2596 3.0267 9 7 5.3742 -1.4515 2.7627 10 6 6.2630 -0.5177 2.0670 11 6 6.1167 0.8569 2.6673 12 1 5.4299 1.0187 3.4850 13 6 6.8595 1.9078 2.1727 14 7 6.7314 3.1074 2.6962 15 14 8.0468 1.6281 0.7579 16 1 7.3412 1.8448 -0.5307 17 1 9.1808 2.5805 0.8677 18 1 8.5623 0.2364 0.8121 19 6 5.8920 -2.2807 3.8539 20 6 6.4153 -3.6017 3.2864 21 7 6.9351 -4.4329 4.3804 22 6 8.1281 -3.8225 4.9849 23 6 8.6002 -4.6885 6.1558 24 8 8.8493 -6.0172 5.6892 25 6 7.7084 -6.6423 5.0950 26 6 7.2272 -5.7959 3.9134 27 6 4.0176 -1.4602 -0.0810 28 6 3.4306 -0.7094 -1.2792 29 8 2.0065 -0.6742 -1.1665 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5143 0.8899 32 1 -0.3634 0.5134 -0.8902 33 1 1.7149 -0.1845 2.1399 34 1 1.6443 -1.7375 1.2708 35 1 7.2952 -0.8519 2.1720 36 1 5.9981 -0.4827 1.0103 37 1 7.2538 3.8469 2.3479 38 1 6.7033 -1.7543 4.3566 39 1 5.0930 -2.4829 4.5671 40 1 5.6040 -4.1280 2.7836 41 1 7.2144 -3.3995 2.5730 42 1 8.9202 -3.7554 4.2391 43 1 7.8824 -2.8240 5.3466 44 1 7.8289 -4.7117 6.9256 45 1 9.5173 -4.2706 6.5710 46 1 6.9112 -6.7222 5.8339 47 1 7.9806 -7.6373 4.7431 48 1 6.3240 -6.2381 3.4930 49 1 8.0050 -5.7604 3.1505 50 1 3.6612 -2.4903 -0.0866 51 1 5.1059 -1.4499 -0.1423 52 1 3.7099 -1.2203 -2.2006 53 1 3.8192 0.3089 -1.2960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345316511.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:46 Heat of formation + Delta-G solvation = -147.630063 kcal Electronic energy + Delta-G solvation = -31805.589508 eV Core-core repulsion = 27676.225530 eV Total energy + Delta-G solvation = -4129.363979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.55006 -40.56755 -39.70870 -37.49717 -36.47397 -34.71699 -34.54289 -33.70866 -32.23362 -31.38035 -29.58131 -28.85177 -27.48881 -25.64166 -25.05466 -24.56839 -23.66383 -22.99662 -21.45114 -21.34752 -19.81707 -19.11748 -18.12167 -17.78629 -17.29612 -17.23419 -17.10078 -16.63661 -16.36054 -16.16244 -16.05284 -15.98899 -15.62311 -15.55418 -15.07521 -14.80975 -14.62384 -14.46287 -14.30125 -14.05631 -13.66965 -13.50414 -13.44704 -13.18900 -13.16771 -12.95733 -12.84354 -12.52039 -12.45991 -12.35603 -12.23939 -12.13226 -12.07310 -11.88532 -11.74585 -11.68660 -11.48724 -11.42749 -10.87164 -10.80718 -10.73317 -10.33579 -9.60734 -9.41723 -8.32344 -6.40400 1.36894 1.38953 1.47587 1.64992 2.05428 2.31225 2.78182 2.83338 2.95599 3.01288 3.50559 3.69637 3.76605 3.82230 3.87871 3.94763 3.95625 4.03903 4.16731 4.21733 4.23155 4.28829 4.33994 4.40342 4.46285 4.49968 4.53803 4.55895 4.61481 4.65742 4.69358 4.74228 4.77181 4.79609 4.79796 4.83635 4.87436 4.93643 4.99134 5.01773 5.04086 5.10514 5.25620 5.32085 5.41296 5.59818 5.84866 5.89127 6.13977 6.15877 6.26147 6.53201 6.66103 7.19279 7.29794 8.83854 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009155 B = 0.003808 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.808297 B = 7351.203078 C = 9371.353003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.085 3.915 3 H 0.057 0.943 4 C -0.120 4.120 5 C -0.111 4.111 6 H 0.093 0.907 7 C 0.523 3.477 8 O -0.588 6.588 9 N -0.594 5.594 10 C 0.217 3.783 11 C -0.541 4.541 12 H 0.027 0.973 13 C 0.024 3.976 14 N -0.939 5.939 15 Si 0.934 3.066 16 H -0.255 1.255 17 H -0.287 1.287 18 H -0.240 1.240 19 C 0.125 3.875 20 C 0.062 3.938 21 N -0.543 5.543 22 C 0.011 3.989 23 C 0.067 3.933 24 O -0.402 6.402 25 C 0.065 3.935 26 C 0.018 3.982 27 C -0.138 4.138 28 C 0.063 3.937 29 O -0.389 6.389 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.269 0.731 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.115 0.885 46 H 0.061 0.939 47 H 0.120 0.880 48 H 0.093 0.907 49 H 0.040 0.960 50 H 0.073 0.927 51 H 0.086 0.914 52 H 0.123 0.877 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 -13.987 -4.513 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 H 0.075 0.925 4 C -0.158 4.158 5 C -0.132 4.132 6 H 0.111 0.889 7 C 0.313 3.687 8 O -0.469 6.469 9 N -0.324 5.324 10 C 0.096 3.904 11 C -0.580 4.580 12 H 0.045 0.955 13 C -0.176 4.176 14 N -0.579 5.579 15 Si 0.756 3.244 16 H -0.179 1.179 17 H -0.213 1.213 18 H -0.163 1.163 19 C 0.001 3.999 20 C -0.067 4.067 21 N -0.269 5.269 22 C -0.117 4.117 23 C -0.010 4.010 24 O -0.321 6.321 25 C -0.012 4.012 26 C -0.110 4.110 27 C -0.176 4.176 28 C -0.013 4.013 29 O -0.308 6.308 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.138 0.862 48 H 0.112 0.888 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.104 0.896 52 H 0.141 0.859 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.047 -14.381 -3.942 14.948 hybrid contribution 1.143 1.091 -0.401 1.630 sum 0.096 -13.289 -4.343 13.981 Atomic orbital electron populations 1.21740 0.91220 1.03217 1.03336 1.22182 0.96457 0.94646 0.83949 0.92480 1.21968 0.92976 1.02058 0.98832 1.21377 0.97482 1.00781 0.93590 0.88870 1.20815 0.81413 0.80954 0.85517 1.90577 1.56426 1.43291 1.56644 1.47902 1.09802 1.39474 1.35227 1.19734 0.90328 0.86988 0.93391 1.21464 1.24614 0.93320 1.18577 0.95456 1.25742 0.98191 0.94231 0.99407 1.70049 1.42484 1.01591 1.43737 0.85919 0.78847 0.79805 0.79824 1.17932 1.21257 1.16303 1.21232 0.99016 0.90356 0.89295 1.22228 0.98759 0.93498 0.92249 1.62110 1.30956 1.02855 1.30966 1.22920 0.91087 0.99692 0.97983 1.22738 1.02231 0.81577 0.94450 1.87945 1.36345 1.29001 1.78799 1.22792 0.88387 0.96308 0.93698 1.22852 1.01255 0.89010 0.97844 1.22173 1.02077 1.00237 0.93121 1.22684 0.80368 1.00071 0.98177 1.87869 1.21676 1.78161 1.43125 0.91762 0.90120 0.90798 0.91877 0.91115 0.93924 0.93068 0.92223 0.90738 0.91502 0.91201 0.94379 0.94187 0.89522 0.91996 0.86673 0.92067 0.86190 0.88840 0.94127 0.90797 0.89591 0.85923 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.56 71.98 0.69 -2.40 16 2 C 0.09 2.39 3.27 30.62 0.10 2.49 16 3 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.12 -3.93 4.19 30.69 0.13 -3.80 16 5 C -0.11 -3.95 1.76 -11.42 -0.02 -3.97 16 6 H 0.09 3.75 6.68 -2.38 -0.02 3.73 16 7 C 0.52 21.25 6.82 87.66 0.60 21.85 16 8 O -0.59 -26.34 15.50 -3.03 -0.05 -26.38 16 9 N -0.59 -23.58 2.47 -826.16 -2.04 -25.62 16 10 C 0.22 8.98 3.88 85.64 0.33 9.31 16 11 C -0.54 -28.05 9.12 25.60 0.23 -27.82 16 12 H 0.03 1.66 8.06 -2.91 -0.02 1.63 16 13 C 0.02 1.24 5.47 84.65 0.46 1.71 16 14 N -0.94 -54.45 13.96 21.45 0.30 -54.15 16 15 Si 0.93 38.16 27.47 68.60 1.88 40.04 16 16 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 17 H -0.29 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.24 -8.77 6.54 99.48 0.65 -8.12 16 19 C 0.12 4.46 5.35 86.38 0.46 4.92 16 20 C 0.06 1.84 5.28 86.30 0.46 2.29 16 21 N -0.54 -14.28 4.73 -895.21 -4.23 -18.51 16 22 C 0.01 0.27 5.44 86.31 0.47 0.74 16 23 C 0.07 1.40 7.01 72.01 0.50 1.90 16 24 O -0.40 -9.17 10.83 -148.98 -1.61 -10.78 16 25 C 0.06 1.22 7.01 72.01 0.50 1.72 16 26 C 0.02 0.39 5.64 86.32 0.49 0.88 16 27 C -0.14 -3.98 5.17 30.68 0.16 -3.82 16 28 C 0.06 1.61 6.84 72.01 0.49 2.10 16 29 O -0.39 -10.99 10.41 -148.98 -1.55 -12.54 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.07 2.39 7.83 -2.39 -0.02 2.38 16 35 H 0.04 1.70 7.08 -2.38 -0.02 1.68 16 36 H 0.05 1.96 4.28 -2.39 -0.01 1.94 16 37 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.07 2.67 6.44 -2.39 -0.02 2.66 16 39 H 0.07 2.63 7.36 -2.39 -0.02 2.61 16 40 H 0.07 2.17 8.04 -2.39 -0.02 2.15 16 41 H 0.04 1.11 8.12 -2.38 -0.02 1.10 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 2.20 6.38 -2.39 -0.02 2.19 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.09 1.83 8.09 -2.39 -0.02 1.81 16 49 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 50 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 51 H 0.09 2.36 6.17 -2.39 -0.01 2.35 16 52 H 0.12 2.39 8.14 -2.39 -0.02 2.38 16 53 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -65.94 404.76 -0.43 -66.36 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.82 Total: 33.46 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.06 Total: 8.11 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -5.97 Total: -98.28 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -3.21 Total: -49.70 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.88 Total: 40.04 kcal Total: -65.94 -0.43 -66.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345316511.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.267 kcal (2) G-P(sol) polarization free energy of solvation -65.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds