Wall clock time and date at job start Wed Apr 1 2020 00:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.50940 * 2 1 4 4 C 1.53101 * 109.50222 * 239.91288 * 2 1 3 5 5 N 1.47023 * 109.25497 * 183.17507 * 4 2 1 6 6 C 1.46897 * 110.99554 * 182.39406 * 5 4 2 7 7 C 1.52996 * 109.47379 * 76.01263 * 6 5 4 8 8 O 1.42903 * 109.47161 * 63.90887 * 7 6 5 9 9 C 1.42900 * 114.00061 * 180.02562 * 8 7 6 10 10 C 1.53042 * 109.46356 * 149.99859 * 9 8 7 11 11 C 1.53185 * 109.31468 * 181.38607 * 10 9 8 12 12 N 1.46928 * 108.77775 * 305.36224 * 11 10 9 13 13 C 1.34776 * 120.63760 * 233.63245 * 12 11 10 14 14 O 1.21689 * 119.99556 * 355.53995 * 13 12 11 15 15 C 1.46374 * 120.00154 * 175.53710 * 13 12 11 16 16 H 1.07996 * 119.99834 * 8.17729 * 15 13 12 17 17 C 1.40051 * 119.99827 * 188.17910 * 15 13 12 18 18 N 1.30671 * 119.99789 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 119.99937 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46732 * 90.00254 * 19 17 15 21 21 H 1.48500 * 109.47289 * 209.99810 * 19 17 15 22 22 H 1.48497 * 109.47379 * 330.00381 * 19 17 15 23 23 C 1.46933 * 118.73352 * 53.60768 * 12 11 10 24 24 C 1.53042 * 109.46004 * 270.06697 * 9 8 7 25 25 C 1.47005 * 110.75131 * 58.61667 * 5 4 2 26 26 C 1.53101 * 109.26165 * 301.38222 * 25 5 4 27 27 H 1.08999 * 109.50614 * 176.78702 * 26 25 5 28 28 C 1.52999 * 109.50435 * 296.91889 * 26 25 5 29 29 O 1.43014 * 109.54263 * 120.10964 * 2 1 3 30 30 H 1.08999 * 109.47282 * 180.08927 * 1 2 3 31 31 H 1.09001 * 109.47069 * 300.08428 * 1 2 3 32 32 H 1.08997 * 109.47266 * 60.08308 * 1 2 3 33 33 H 1.08993 * 109.50670 * 63.24297 * 4 2 1 34 34 H 1.09002 * 109.50747 * 303.10582 * 4 2 1 35 35 H 1.08998 * 109.47283 * 316.00733 * 6 5 4 36 36 H 1.09004 * 109.46444 * 196.00836 * 6 5 4 37 37 H 1.09004 * 109.47381 * 303.90967 * 7 6 5 38 38 H 1.08997 * 109.47362 * 183.90797 * 7 6 5 39 39 H 1.09004 * 109.44659 * 30.03238 * 9 8 7 40 40 H 1.09004 * 109.49282 * 61.43003 * 10 9 8 41 41 H 1.09002 * 109.49547 * 301.33699 * 10 9 8 42 42 H 1.08993 * 109.59139 * 65.15263 * 11 10 9 43 43 H 1.08999 * 109.58885 * 185.58100 * 11 10 9 44 44 H 0.97005 * 119.99931 * 179.97438 * 18 17 15 45 45 H 1.09005 * 109.58397 * 186.60496 * 23 12 11 46 46 H 1.08999 * 109.69926 * 66.25120 * 23 12 11 47 47 H 1.08994 * 109.49849 * 298.56662 * 24 9 8 48 48 H 1.09003 * 109.49860 * 58.66235 * 24 9 8 49 49 H 1.08997 * 109.51077 * 61.31809 * 25 5 4 50 50 H 1.09006 * 109.50595 * 181.45079 * 25 5 4 51 51 H 1.09000 * 109.46866 * 179.78146 * 28 26 25 52 52 H 1.08997 * 109.47296 * 299.77658 * 28 26 25 53 53 H 1.08998 * 109.47686 * 59.78142 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0411 -0.7235 -1.2487 5 7 3.5093 -0.7872 -1.2053 6 6 4.0445 -1.4251 -2.4155 7 6 3.9788 -0.4390 -3.5834 8 8 4.8274 0.6783 -3.3118 9 6 4.8386 1.6645 -4.3458 10 6 5.1000 3.0425 -3.7334 11 6 5.0770 4.1014 -4.8400 12 7 6.0343 3.7142 -5.8852 13 6 6.9913 4.5717 -6.2918 14 8 7.0188 5.7059 -5.8517 15 6 7.9976 4.1387 -7.2626 16 1 7.8986 3.1812 -7.7522 17 6 9.0886 4.9661 -7.5565 18 7 9.2086 6.1244 -6.9637 19 14 10.3731 4.4132 -8.7949 20 1 9.9798 4.8685 -10.1526 21 1 11.6897 5.0002 -8.4381 22 1 10.4710 2.9316 -8.7787 23 6 5.9288 2.3741 -6.4783 24 6 5.9424 1.3345 -5.3533 25 6 3.9648 -1.4870 0.0046 26 6 3.4343 -0.7559 1.2408 27 1 3.7217 -1.3033 2.1385 28 6 4.0230 0.6554 1.2914 29 8 2.0084 -0.6761 1.1659 30 1 -0.3634 -1.0276 0.0016 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8907 33 1 1.7266 -0.1791 -2.1391 34 1 1.6336 -1.7341 -1.2762 35 1 3.4523 -2.3090 -2.6525 36 1 5.0806 -1.7171 -2.2443 37 1 2.9528 -0.0936 -3.7102 38 1 4.3109 -0.9340 -4.4960 39 1 3.8737 1.6697 -4.8529 40 1 6.0757 3.0453 -3.2473 41 1 4.3265 3.2669 -2.9990 42 1 4.0757 4.1629 -5.2663 43 1 5.3600 5.0691 -4.4258 44 1 9.9645 6.6974 -7.1670 45 1 6.7739 2.2021 -7.1450 46 1 4.9981 2.2930 -7.0397 47 1 6.9100 1.3534 -4.8520 48 1 5.7683 0.3432 -5.7719 49 1 3.5880 -2.5098 -0.0029 50 1 5.0545 -1.5000 0.0291 51 1 3.6420 1.1767 2.1695 52 1 5.1097 0.5940 1.3484 53 1 3.7366 1.2010 0.3923 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357605351.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:20 Heat of formation + Delta-G solvation = -147.431320 kcal Electronic energy + Delta-G solvation = -31051.313815 eV Core-core repulsion = 26921.958455 eV Total energy + Delta-G solvation = -4129.355360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.01138 -40.47722 -38.97635 -37.26540 -36.29465 -34.66390 -34.32408 -32.82449 -31.96271 -31.43736 -29.76477 -28.39162 -27.84136 -25.77716 -25.11543 -24.11019 -23.54064 -22.36078 -22.17449 -20.55581 -20.40313 -18.54764 -18.04321 -17.65376 -17.51502 -17.21206 -16.50176 -16.23415 -16.04532 -16.01936 -15.80284 -15.58153 -15.51591 -15.08530 -14.95738 -14.42999 -14.22616 -14.12997 -13.87131 -13.57281 -13.35344 -13.29376 -13.22248 -13.08464 -12.95255 -12.81590 -12.73895 -12.66906 -12.62838 -12.44697 -12.22655 -12.14782 -12.03871 -11.96186 -11.91169 -11.58421 -11.38754 -11.18631 -10.93149 -10.51525 -10.28822 -9.76546 -9.25571 -9.11173 -8.29170 -6.82949 1.39888 1.41565 1.56518 2.23931 2.45506 2.69315 2.74979 2.85761 2.90294 3.61188 3.78271 3.84289 3.88159 3.93776 3.97284 4.07694 4.17654 4.20888 4.24696 4.30120 4.35341 4.40521 4.42385 4.46128 4.49599 4.54878 4.61437 4.65812 4.70941 4.76441 4.79903 4.80928 4.84318 4.92182 4.93369 4.99414 5.00305 5.02727 5.04619 5.14846 5.18155 5.25725 5.40365 5.41582 5.42054 5.77826 6.01285 6.02376 6.15471 6.27962 6.40600 6.48112 6.88553 7.42452 8.47155 8.67840 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020848 B = 0.002179 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.736451 B =12847.448588 C =13071.363611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.058 0.942 4 C 0.028 3.972 5 N -0.540 5.540 6 C 0.060 3.940 7 C 0.064 3.936 8 O -0.381 6.381 9 C 0.105 3.895 10 C -0.113 4.113 11 C 0.122 3.878 12 N -0.647 5.647 13 C 0.541 3.459 14 O -0.634 6.634 15 C -0.569 4.569 16 H 0.095 0.905 17 C 0.027 3.973 18 N -0.826 5.826 19 Si 0.996 3.004 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.246 1.246 23 C 0.120 3.880 24 C -0.144 4.144 25 C 0.028 3.972 26 C 0.088 3.912 27 H 0.118 0.882 28 C -0.170 4.170 29 O -0.394 6.394 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.274 0.726 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.047 0.953 48 H 0.095 0.905 49 H 0.043 0.957 50 H 0.089 0.911 51 H 0.056 0.944 52 H 0.067 0.933 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.900 -20.928 10.590 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.076 0.924 4 C -0.100 4.100 5 N -0.265 5.265 6 C -0.068 4.068 7 C -0.013 4.013 8 O -0.301 6.301 9 C 0.048 3.952 10 C -0.152 4.152 11 C -0.001 4.001 12 N -0.383 5.383 13 C 0.347 3.653 14 O -0.522 6.522 15 C -0.605 4.605 16 H 0.113 0.887 17 C -0.188 4.188 18 N -0.455 5.455 19 Si 0.815 3.185 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.169 1.169 23 C -0.003 4.003 24 C -0.182 4.182 25 C -0.100 4.100 26 C 0.031 3.969 27 H 0.135 0.865 28 C -0.227 4.227 29 O -0.314 6.314 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.066 0.934 48 H 0.113 0.887 49 H 0.061 0.939 50 H 0.107 0.893 51 H 0.075 0.925 52 H 0.086 0.914 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.642 -19.748 11.190 27.011 hybrid contribution 0.567 -0.326 -0.727 0.979 sum -14.074 -20.075 10.462 26.656 Atomic orbital electron populations 1.21744 0.91579 1.03107 1.03355 1.22231 0.95627 0.95538 0.84168 0.92384 1.22839 0.87653 1.00033 0.99477 1.62087 1.08881 1.53356 1.02137 1.22161 1.01038 0.94483 0.89108 1.22667 0.93834 0.87508 0.97268 1.88007 1.67040 1.31908 1.43124 1.21863 0.97849 0.87489 0.88035 1.21809 1.01817 0.93849 0.97679 1.21200 0.92539 0.97505 0.88884 1.48115 1.33338 1.15790 1.41106 1.18681 0.80762 0.83614 0.82231 1.90533 1.76650 1.22159 1.62854 1.21502 1.07740 1.05843 1.25414 0.88673 1.27017 1.00638 0.93638 0.97465 1.70192 1.28135 1.09839 1.37365 0.85050 0.75980 0.79995 0.77488 1.18583 1.19992 1.16904 1.21588 1.02361 0.81039 0.95328 1.22349 0.99484 0.99518 0.96875 1.22770 1.01337 0.95622 0.90270 1.22360 0.80173 0.96463 0.97933 0.86481 1.22205 1.01505 0.97046 1.01946 1.87999 1.21532 1.78259 1.43584 0.91766 0.91749 0.89545 0.89294 0.93893 0.91408 0.90238 0.92864 0.91739 0.90751 0.94001 0.89540 0.91492 0.93031 0.91661 0.89831 0.91346 0.93444 0.88674 0.93864 0.89309 0.92502 0.91433 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.57 71.98 0.69 -1.13 16 2 C 0.08 1.42 3.02 30.63 0.09 1.51 16 3 H 0.06 1.15 6.49 -2.39 -0.02 1.14 16 4 C 0.03 0.45 4.75 86.31 0.41 0.86 16 5 N -0.54 -9.71 3.95 -895.22 -3.54 -13.25 16 6 C 0.06 0.95 5.39 86.30 0.47 1.42 16 7 C 0.06 1.15 5.93 71.98 0.43 1.58 16 8 O -0.38 -9.88 9.92 -148.98 -1.48 -11.35 16 9 C 0.11 2.88 2.57 30.62 0.08 2.96 16 10 C -0.11 -3.75 5.73 30.67 0.18 -3.57 16 11 C 0.12 4.90 6.42 86.36 0.55 5.46 16 12 N -0.65 -29.91 2.97 -823.99 -2.45 -32.36 16 13 C 0.54 32.06 7.61 86.36 0.66 32.71 16 14 O -0.63 -43.61 14.50 -4.31 -0.06 -43.67 16 15 C -0.57 -32.27 8.85 24.83 0.22 -32.05 16 16 H 0.10 4.78 5.67 -2.91 -0.02 4.76 16 17 C 0.03 1.52 5.50 85.31 0.47 1.99 16 18 N -0.83 -51.33 11.86 21.84 0.26 -51.07 16 19 Si 1.00 41.00 29.56 68.60 2.03 43.03 16 20 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 23 C 0.12 4.25 6.35 86.36 0.55 4.80 16 24 C -0.14 -4.22 5.69 30.67 0.17 -4.05 16 25 C 0.03 0.46 5.01 86.32 0.43 0.89 16 26 C 0.09 1.50 3.92 30.63 0.12 1.62 16 27 H 0.12 1.59 8.14 -2.39 -0.02 1.58 16 28 C -0.17 -3.16 8.88 71.98 0.64 -2.52 16 29 O -0.39 -7.81 10.29 -148.98 -1.53 -9.35 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.32 6.77 -2.39 -0.02 1.30 16 34 H 0.04 0.65 8.13 -2.39 -0.02 0.63 16 35 H 0.07 0.83 7.99 -2.39 -0.02 0.81 16 36 H 0.08 1.33 7.86 -2.39 -0.02 1.32 16 37 H 0.05 0.87 6.73 -2.38 -0.02 0.85 16 38 H 0.06 0.98 7.84 -2.39 -0.02 0.97 16 39 H 0.07 1.75 7.79 -2.38 -0.02 1.73 16 40 H 0.04 1.61 8.14 -2.38 -0.02 1.60 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.05 2.43 7.03 -2.39 -0.02 2.41 16 44 H 0.27 15.41 8.29 -92.70 -0.77 14.64 16 45 H 0.08 3.16 5.31 -2.38 -0.01 3.14 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.09 2.15 7.84 -2.39 -0.02 2.13 16 49 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.09 1.39 8.02 -2.38 -0.02 1.37 16 51 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 53 H 0.06 1.29 6.13 -2.39 -0.01 1.27 16 Total: -1.00 -78.86 405.17 0.26 -78.60 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.88 Total: 26.96 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 6.15 Total: 12.47 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -5.73 Total: -96.69 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -3.07 Total: -64.37 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -78.86 0.26 -78.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357605351.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.833 kcal (2) G-P(sol) polarization free energy of solvation -78.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds