Wall clock time and date at job start Wed Apr 1 2020 00:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34233 * 116.99408 * 2 1 4 4 O 1.20819 * 120.00257 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99497 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.46415 * 300.02540 * 5 3 2 7 7 C 1.53042 * 109.45972 * 60.00244 * 5 3 2 8 8 C 1.53194 * 109.31123 * 181.36897 * 7 5 3 9 9 N 1.46928 * 108.77625 * 305.36626 * 8 7 5 10 10 C 1.34780 * 120.62951 * 233.58291 * 9 8 7 11 11 O 1.21578 * 120.00091 * 185.03120 * 10 9 8 12 12 N 1.34779 * 119.99723 * 5.03858 * 10 9 8 13 13 C 1.46496 * 119.99821 * 174.92517 * 12 10 9 14 14 C 1.52997 * 109.47407 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47147 * 59.99408 * 14 13 12 16 16 C 1.53003 * 109.47073 * 300.00023 * 14 13 12 17 17 C 1.53001 * 109.47751 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.47332 * 180.02562 * 17 14 13 19 19 H 1.07998 * 119.99840 * 359.97438 * 18 17 14 20 20 C 1.37878 * 119.99803 * 180.02562 * 18 17 14 21 21 N 1.31518 * 119.99906 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00072 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47132 * 179.97438 * 22 20 18 24 24 H 1.48507 * 109.46741 * 299.99589 * 22 20 18 25 25 H 1.48497 * 109.47302 * 59.99478 * 22 20 18 26 26 C 1.46918 * 118.73722 * 53.86113 * 9 8 7 27 27 C 1.53041 * 109.44665 * 180.02562 * 5 3 2 28 28 H 1.08998 * 109.49853 * 58.67290 * 27 5 3 29 29 C 1.52999 * 109.49827 * 298.57331 * 27 5 3 30 30 H 1.09003 * 109.47101 * 60.00472 * 1 2 3 31 31 H 1.09006 * 109.46720 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47607 * 299.99739 * 1 2 3 33 33 H 1.08998 * 109.49701 * 61.41617 * 7 5 3 34 34 H 1.08994 * 109.49554 * 301.31866 * 7 5 3 35 35 H 1.08994 * 109.58604 * 185.57430 * 8 7 5 36 36 H 1.09001 * 109.70466 * 65.22398 * 8 7 5 37 37 H 0.97002 * 120.00338 * 354.92319 * 12 10 9 38 38 H 1.08992 * 109.47341 * 59.99689 * 13 12 10 39 39 H 1.09003 * 109.47341 * 299.99734 * 13 12 10 40 40 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.47752 * 300.00596 * 15 14 13 42 42 H 1.09003 * 109.46791 * 60.00832 * 15 14 13 43 43 H 1.09000 * 109.47006 * 299.99789 * 16 14 13 44 44 H 1.08997 * 109.47300 * 59.99721 * 16 14 13 45 45 H 1.09002 * 109.47191 * 179.97438 * 16 14 13 46 46 H 1.09003 * 109.46799 * 59.99314 * 17 14 13 47 47 H 1.09002 * 109.46449 * 300.00035 * 17 14 13 48 48 H 0.97001 * 120.00106 * 0.02562 * 21 20 18 49 49 H 1.08993 * 109.59315 * 65.93056 * 26 9 8 50 50 H 1.09012 * 109.58508 * 186.35523 * 26 9 8 51 51 H 1.08995 * 109.47111 * 60.00436 * 29 27 5 52 52 H 1.09007 * 109.46910 * 180.02562 * 29 27 5 53 53 H 1.08995 * 109.47201 * 299.99935 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9555 0.7806 0.8907 7 6 4.1137 0.5810 -1.2488 8 6 5.6446 0.6332 -1.2276 9 7 6.0680 2.0324 -1.0800 10 6 6.9348 2.5832 -1.9529 11 8 7.3483 3.7116 -1.7690 12 7 7.3431 1.8830 -3.0298 13 6 8.1964 2.5190 -4.0364 14 6 8.5125 1.5139 -5.1458 15 6 7.2096 1.0506 -5.8006 16 6 9.2401 0.3076 -4.5489 17 6 9.4043 2.1778 -6.1969 18 6 9.7150 1.1879 -7.2898 19 1 9.3166 0.1854 -7.2396 20 6 10.5087 1.5619 -8.3534 21 7 10.9942 2.7827 -8.4143 22 14 10.8945 0.3347 -9.7079 23 1 11.7599 0.9793 -10.7280 24 1 11.5998 -0.8366 -9.1283 25 1 9.6300 -0.1140 -10.3442 26 6 5.5335 2.8177 0.0406 27 6 3.9995 2.7428 0.0011 28 1 3.5898 3.2427 0.8788 29 6 3.4830 3.4282 -1.2655 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 3.7445 1.0902 -2.1390 34 1 3.7853 -0.4582 -1.2610 35 1 6.0369 0.2291 -2.1607 36 1 6.0207 0.0472 -0.3890 37 1 7.0719 0.9580 -3.1383 38 1 9.1244 2.8494 -3.5699 39 1 7.6779 3.3781 -4.4621 40 1 7.4347 0.3342 -6.5907 41 1 6.5746 0.5775 -5.0517 42 1 6.6912 1.9100 -6.2260 43 1 10.1683 0.6375 -4.0824 44 1 8.6052 -0.1657 -3.7999 45 1 9.4649 -0.4088 -5.3392 46 1 10.3324 2.5075 -5.7300 47 1 8.8862 3.0374 -6.6222 48 1 10.7942 3.4198 -7.7107 49 1 5.8986 2.4069 0.9818 50 1 5.8525 3.8557 -0.0556 51 1 2.3949 3.3709 -1.2916 52 1 3.7922 4.4735 -1.2649 53 1 3.8943 2.9285 -2.1425 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358740270.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:14 Heat of formation + Delta-G solvation = -149.532609 kcal Electronic energy + Delta-G solvation = -31312.110924 eV Core-core repulsion = 27182.664445 eV Total energy + Delta-G solvation = -4129.446479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.14763 -41.27877 -39.42208 -38.47520 -37.44760 -35.57951 -34.69918 -33.66043 -32.78214 -29.28816 -28.74585 -28.26918 -28.03803 -27.59843 -26.44929 -24.75046 -24.09707 -22.69852 -21.41504 -20.54488 -19.75096 -19.24974 -18.56709 -18.44840 -17.66764 -17.32461 -17.10892 -16.79664 -16.19923 -15.87469 -15.61936 -15.54780 -15.41120 -15.05851 -14.93117 -14.67041 -14.60736 -14.30309 -14.12478 -13.74895 -13.70780 -13.65682 -13.20782 -13.04035 -12.88391 -12.79271 -12.77741 -12.61327 -12.60712 -12.35861 -12.18834 -11.94656 -11.85524 -11.77388 -11.65853 -11.62395 -11.59165 -11.35185 -11.22343 -11.10358 -10.48897 -10.47236 -10.23558 -9.49411 -8.57675 -6.26806 1.14751 1.55626 1.59377 1.64440 1.74062 1.81941 2.13684 2.62485 2.92486 3.25374 3.41340 3.58983 3.74491 3.87944 3.91474 4.00165 4.09222 4.13274 4.16770 4.31128 4.31930 4.33842 4.46977 4.54836 4.61837 4.62724 4.64200 4.68182 4.72770 4.73528 4.82153 4.85417 4.89309 4.98748 5.03236 5.04582 5.06374 5.09174 5.27114 5.29912 5.33600 5.34658 5.46892 5.48132 5.51880 5.56914 5.66527 5.89053 6.10949 6.29254 6.66566 6.72703 6.95628 7.54107 7.54349 8.82136 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.002277 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.500541 B =12293.644535 C =13029.830874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.532 6.532 5 C -0.069 4.069 6 H 0.144 0.856 7 C -0.124 4.124 8 C 0.109 3.891 9 N -0.624 5.624 10 C 0.701 3.299 11 O -0.639 6.639 12 N -0.725 5.725 13 C 0.161 3.839 14 C -0.057 4.057 15 C -0.119 4.119 16 C -0.119 4.119 17 C 0.024 3.976 18 C -0.587 4.587 19 H 0.067 0.933 20 C -0.048 4.048 21 N -0.947 5.947 22 Si 1.115 2.885 23 H -0.293 1.293 24 H -0.267 1.267 25 H -0.268 1.268 26 C 0.136 3.864 27 C -0.082 4.082 28 H 0.096 0.904 29 C -0.150 4.150 30 H 0.056 0.944 31 H 0.130 0.870 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.408 0.592 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.033 0.967 43 H 0.035 0.965 44 H 0.072 0.928 45 H 0.056 0.944 46 H -0.019 1.019 47 H -0.020 1.020 48 H 0.252 0.748 49 H 0.098 0.902 50 H 0.072 0.928 51 H 0.064 0.936 52 H 0.041 0.959 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.628 -12.337 21.717 32.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.310 3.690 4 O -0.421 6.421 5 C -0.087 4.087 6 H 0.162 0.838 7 C -0.162 4.162 8 C -0.013 4.013 9 N -0.361 5.361 10 C 0.402 3.598 11 O -0.521 6.521 12 N -0.384 5.384 13 C 0.036 3.964 14 C -0.058 4.058 15 C -0.176 4.176 16 C -0.177 4.177 17 C -0.014 4.014 18 C -0.624 4.624 19 H 0.085 0.915 20 C -0.244 4.244 21 N -0.586 5.586 22 Si 0.937 3.063 23 H -0.219 1.219 24 H -0.192 1.192 25 H -0.193 1.193 26 C 0.013 3.987 27 C -0.102 4.102 28 H 0.114 0.886 29 C -0.207 4.207 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.248 0.752 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.075 0.925 46 H -0.001 1.001 47 H -0.002 1.002 48 H 0.061 0.939 49 H 0.116 0.884 50 H 0.091 0.909 51 H 0.083 0.917 52 H 0.060 0.940 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.779 -11.452 20.417 30.646 hybrid contribution -0.917 1.003 1.017 1.697 sum -20.696 -10.449 21.434 31.574 Atomic orbital electron populations 1.23506 0.75185 1.05573 1.02247 1.86501 1.24571 1.32800 1.83600 1.24113 0.92593 0.81118 0.71152 1.90636 1.67972 1.37241 1.46294 1.21152 0.85941 0.98141 1.03515 0.83807 1.21967 0.95306 1.02927 0.96002 1.21926 0.94132 0.80811 1.04455 1.47290 1.46198 1.13805 1.28801 1.16058 0.79729 0.83792 0.80189 1.90878 1.62522 1.20964 1.77713 1.45162 1.54637 1.16263 1.22369 1.21021 0.92687 0.94942 0.87735 1.20585 0.96622 0.95278 0.93289 1.21667 0.94999 1.00587 1.00340 1.21674 0.99090 0.96843 1.00045 1.19146 0.93045 0.95167 0.94027 1.22342 1.33043 0.99593 1.07471 0.91523 1.27361 0.94052 1.00081 1.02938 1.70915 1.45853 1.05793 1.36037 0.82963 0.77063 0.73115 0.73198 1.21909 1.19188 1.19303 1.21671 0.91402 0.96998 0.88629 1.21404 0.94853 0.94026 0.99881 0.88584 1.21941 1.01676 0.99742 0.97386 0.92533 0.85178 0.91994 0.92006 0.86625 0.89243 0.87494 0.75167 0.94000 0.94302 0.92462 0.91055 0.94802 0.94590 0.90955 0.92475 1.00067 1.00206 0.93889 0.88418 0.90943 0.91669 0.94013 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -4.54 10.44 -51.45 -0.54 -5.08 16 3 C 0.47 7.13 6.97 71.24 0.50 7.63 16 4 O -0.53 -11.58 13.50 21.98 0.30 -11.29 16 5 C -0.07 -0.74 2.37 -11.51 -0.03 -0.77 16 6 H 0.14 0.70 8.14 -2.39 -0.02 0.69 16 7 C -0.12 -1.20 4.96 30.67 0.15 -1.05 16 8 C 0.11 1.16 6.43 86.36 0.56 1.71 16 9 N -0.62 -12.17 2.40 -836.07 -2.01 -14.17 16 10 C 0.70 20.77 8.30 179.05 1.49 22.25 16 11 O -0.64 -25.40 15.78 -3.96 -0.06 -25.47 16 12 N -0.73 -20.10 4.87 -478.56 -2.33 -22.44 16 13 C 0.16 5.84 4.57 86.38 0.39 6.24 16 14 C -0.06 -2.14 0.54 -52.18 -0.03 -2.17 16 15 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 16 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 17 C 0.02 1.20 3.35 29.85 0.10 1.30 16 18 C -0.59 -31.48 7.65 25.60 0.20 -31.29 16 19 H 0.07 3.35 5.68 -2.91 -0.02 3.33 16 20 C -0.05 -2.74 5.46 84.65 0.46 -2.28 16 21 N -0.95 -59.45 13.65 21.45 0.29 -59.16 16 22 Si 1.11 49.42 29.90 68.60 2.05 51.47 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 C 0.14 2.35 5.86 86.51 0.51 2.86 16 27 C -0.08 -1.27 2.36 -10.57 -0.02 -1.29 16 28 H 0.10 1.41 8.07 -2.39 -0.02 1.39 16 29 C -0.15 -3.23 8.41 71.98 0.61 -2.63 16 30 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 31 H 0.13 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.06 0.57 8.13 -2.39 -0.02 0.56 16 33 H 0.06 0.87 6.33 -2.39 -0.02 0.85 16 34 H 0.12 0.62 8.08 -2.39 -0.02 0.60 16 35 H 0.09 0.88 5.57 -2.39 -0.01 0.87 16 36 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.41 8.56 3.62 -92.71 -0.34 8.23 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 41 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 45 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 46 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 47 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 48 H 0.25 16.18 7.22 -92.71 -0.67 15.51 16 49 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.07 1.72 7.03 -2.38 -0.02 1.70 16 51 H 0.06 1.52 5.64 -2.39 -0.01 1.50 16 52 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 53 H 0.04 1.05 5.97 -2.39 -0.01 1.04 16 Total: -1.00 -78.70 401.47 5.60 -73.10 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.67 Total: 17.77 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 7.23 Total: -4.75 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -4.04 Total: -95.76 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.30 Total: -41.83 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.47 kcal Total: -78.70 5.60 -73.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358740270.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.434 kcal (2) G-P(sol) polarization free energy of solvation -78.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds