Wall clock time and date at job start Wed Apr 1 2020 00:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53125 * 1 3 3 H 1.08865 * 109.97722 * 2 1 4 4 O 1.43668 * 109.31539 * 121.17532 * 2 1 3 5 5 C 1.43788 * 110.17575 * 114.26931 * 4 2 1 6 6 C 1.55009 * 105.52708 * 340.83335 * 5 4 2 7 7 C 1.53664 * 110.20039 * 238.48553 * 2 1 3 8 8 C 1.52314 * 110.62874 * 152.35323 * 7 2 1 9 9 N 1.47001 * 110.19037 * 283.02131 * 8 7 2 10 10 C 1.46915 * 111.05298 * 178.94046 * 9 8 7 11 11 C 1.52997 * 109.47044 * 188.75679 * 10 9 8 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 13 13 O 1.21288 * 120.00038 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00369 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99736 * 359.97438 * 14 12 11 16 16 C 1.46505 * 120.00115 * 180.02562 * 14 12 11 17 17 C 1.50702 * 109.46836 * 89.99960 * 16 14 12 18 18 H 1.07994 * 120.00445 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99368 * 179.97438 * 17 16 14 20 20 N 1.31515 * 120.00175 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99773 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47075 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46791 * 120.00371 * 21 19 17 24 24 H 1.48497 * 109.47353 * 240.00199 * 21 19 17 25 25 C 1.47171 * 110.05991 * 302.13546 * 9 8 7 26 26 C 1.53145 * 108.56767 * 62.23409 * 25 9 8 27 27 H 1.09085 * 109.10161 * 63.40730 * 26 25 9 28 28 C 1.53192 * 109.24070 * 182.51726 * 26 25 9 29 29 O 1.41267 * 112.03432 * 25.71056 * 7 2 1 30 30 H 1.09001 * 109.47155 * 181.50953 * 1 2 3 31 31 H 1.08995 * 109.47335 * 301.51253 * 1 2 3 32 32 H 1.09005 * 109.46863 * 61.51612 * 1 2 3 33 33 H 1.09326 * 110.60783 * 100.08700 * 5 4 2 34 34 H 1.09326 * 110.60318 * 221.61095 * 5 4 2 35 35 H 1.08700 * 111.40315 * 277.17410 * 6 5 4 36 36 H 1.08792 * 111.26554 * 152.07108 * 6 5 4 37 37 H 1.09145 * 109.43071 * 162.72789 * 8 7 2 38 38 H 1.09147 * 109.45791 * 43.27335 * 8 7 2 39 39 H 1.09002 * 109.47236 * 308.75739 * 10 9 8 40 40 H 1.09001 * 109.47372 * 68.75929 * 10 9 8 41 41 H 1.09002 * 109.47153 * 300.00111 * 11 10 9 42 42 H 1.08998 * 109.47533 * 59.99740 * 11 10 9 43 43 H 1.08996 * 109.46784 * 90.00263 * 15 14 12 44 44 H 1.09003 * 109.47146 * 209.99886 * 15 14 12 45 45 H 1.08994 * 109.47096 * 330.00470 * 15 14 12 46 46 H 1.08998 * 109.46420 * 209.99986 * 16 14 12 47 47 H 1.08995 * 109.46904 * 329.99992 * 16 14 12 48 48 H 0.97004 * 119.99914 * 180.02562 * 20 19 17 49 49 H 1.08852 * 109.58387 * 181.97313 * 25 9 8 50 50 H 1.08884 * 109.54646 * 302.57948 * 25 9 8 51 51 H 1.09001 * 109.46982 * 60.00511 * 28 26 25 52 52 H 1.09003 * 109.46867 * 180.02562 * 28 26 25 53 53 H 1.09002 * 109.47341 * 300.00771 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5313 0.0000 0.0000 3 1 1.9032 1.0231 0.0000 4 8 2.0065 -0.7018 1.1600 5 6 2.6940 -1.9018 0.7665 6 6 2.2213 -2.1955 -0.6802 7 6 2.0619 -0.7538 -1.2294 8 6 3.4322 -0.2253 -1.6328 9 7 3.2939 1.0569 -2.3384 10 6 4.6075 1.5967 -2.7145 11 6 4.4401 3.0215 -3.2462 12 6 5.7876 3.5756 -3.6314 13 8 6.7838 2.8974 -3.4946 14 7 5.8857 4.8247 -4.1279 15 6 4.6824 5.6437 -4.2937 16 6 7.1957 5.3631 -4.5029 17 6 7.4777 5.0378 -5.9472 18 1 6.7535 4.4857 -6.5277 19 6 8.6598 5.4460 -6.5275 20 7 9.5415 6.1188 -5.8206 21 14 9.0098 5.0423 -8.3175 22 1 7.8676 4.2825 -8.8860 23 1 9.1954 6.3019 -9.0818 24 1 10.2444 4.2221 -8.4077 25 6 2.4357 0.8914 -3.5225 26 6 1.0416 0.4601 -3.0580 27 1 0.6059 1.2548 -2.4509 28 6 0.1526 0.2223 -4.2826 29 8 1.1376 -0.7425 -2.2977 30 1 -0.3633 -1.0273 0.0271 31 1 -0.3634 0.5371 0.8761 32 1 -0.3633 0.4901 -0.9033 33 1 3.7764 -1.7497 0.7879 34 1 2.4285 -2.7315 1.4271 35 1 1.2692 -2.7199 -0.6877 36 1 2.9798 -2.7379 -1.2407 37 1 3.9217 -0.9480 -2.2880 38 1 4.0439 -0.0821 -0.7402 39 1 5.2589 1.6092 -1.8407 40 1 5.0500 0.9697 -3.4886 41 1 3.7887 3.0091 -4.1201 42 1 3.9976 3.6486 -2.4722 43 1 4.5040 6.2157 -3.3832 44 1 4.8208 6.3276 -5.1311 45 1 3.8271 4.9972 -4.4901 46 1 7.1962 6.4446 -4.3672 47 1 7.9655 4.9173 -3.8731 48 1 10.3731 6.4063 -6.2290 49 1 2.3670 1.8365 -4.0582 50 1 2.8566 0.1268 -4.1735 51 1 0.5896 -0.5607 -4.9024 52 1 -0.8411 -0.0846 -3.9561 53 1 0.0765 1.1432 -4.8608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363939292.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:58 Heat of formation + Delta-G solvation = -140.224430 kcal Electronic energy + Delta-G solvation = -31449.798518 eV Core-core repulsion = 27320.755672 eV Total energy + Delta-G solvation = -4129.042846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.98908 -40.70214 -39.25595 -37.30093 -36.55247 -34.76046 -34.30368 -32.70282 -32.19798 -31.32020 -29.74870 -28.30240 -27.44978 -26.98883 -25.56287 -24.47030 -23.24045 -22.76256 -22.19889 -20.63817 -19.95234 -18.72382 -18.18617 -17.81895 -17.51530 -17.14754 -16.97308 -16.84799 -16.45874 -16.19834 -16.09666 -15.38342 -15.35586 -14.95856 -14.77401 -14.46832 -14.23878 -14.06929 -13.87201 -13.75364 -13.64305 -13.45934 -13.37812 -13.27828 -13.22325 -13.02317 -12.92486 -12.80856 -12.78325 -12.56052 -12.48096 -12.22745 -12.19979 -12.15092 -11.89375 -11.80318 -11.68143 -11.15451 -10.67019 -10.63635 -10.54422 -10.51579 -9.54769 -9.42525 -8.24309 -6.39408 1.34843 1.37163 1.48901 1.82442 2.19097 2.34739 2.40992 2.76177 2.95940 3.05234 3.32094 3.53363 3.69509 3.77058 3.86228 3.88618 4.03047 4.11518 4.14462 4.20503 4.30252 4.31646 4.39293 4.43495 4.49611 4.54353 4.56167 4.64676 4.71511 4.73264 4.75612 4.79625 4.87137 4.89406 4.91517 4.92930 4.97133 5.01997 5.02773 5.06660 5.16846 5.22093 5.29559 5.35682 5.54699 5.75723 5.81954 5.83263 6.01961 6.04187 6.34974 6.68106 6.78203 7.26460 7.46949 8.83016 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.002353 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.198658 B =11896.740885 C =12250.324762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.083 0.917 4 O -0.395 6.395 5 C 0.046 3.954 6 C -0.140 4.140 7 C 0.106 3.894 8 C 0.031 3.969 9 N -0.527 5.527 10 C 0.081 3.919 11 C -0.114 4.114 12 C 0.494 3.506 13 O -0.602 6.602 14 N -0.611 5.611 15 C 0.078 3.922 16 C 0.257 3.743 17 C -0.541 4.541 18 H 0.054 0.946 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.282 1.282 25 C 0.010 3.990 26 C 0.092 3.908 27 H 0.075 0.925 28 C -0.141 4.141 29 O -0.366 6.366 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.096 0.904 46 H 0.023 0.977 47 H -0.004 1.004 48 H 0.267 0.733 49 H 0.105 0.895 50 H 0.036 0.964 51 H 0.057 0.943 52 H 0.072 0.928 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.997 -13.521 8.523 28.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.004 3.996 3 H 0.101 0.899 4 O -0.316 6.316 5 C -0.030 4.030 6 C -0.177 4.177 7 C 0.065 3.935 8 C -0.097 4.097 9 N -0.252 5.252 10 C -0.048 4.048 11 C -0.154 4.154 12 C 0.283 3.717 13 O -0.484 6.484 14 N -0.342 5.342 15 C -0.064 4.064 16 C 0.136 3.864 17 C -0.579 4.579 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.208 1.208 25 C -0.118 4.118 26 C 0.035 3.965 27 H 0.093 0.907 28 C -0.199 4.199 29 O -0.285 6.285 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.115 0.885 46 H 0.041 0.959 47 H 0.014 0.986 48 H 0.076 0.924 49 H 0.123 0.877 50 H 0.054 0.946 51 H 0.076 0.924 52 H 0.091 0.909 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.690 -13.487 9.066 28.729 hybrid contribution 1.730 -0.317 -1.498 2.311 sum -21.960 -13.804 7.568 27.020 Atomic orbital electron populations 1.21981 0.93637 1.02578 1.02307 1.23128 0.95670 0.96356 0.84457 0.89883 1.88515 1.75008 1.37450 1.30585 1.23575 0.96969 0.87706 0.94729 1.23251 1.04040 0.94585 0.95868 1.22213 0.87698 0.96268 0.87275 1.22671 0.97064 0.90378 0.99588 1.62468 1.12981 1.25477 1.24235 1.21639 0.89417 0.94119 0.99582 1.21537 0.92925 0.96895 1.04023 1.21341 0.92043 0.81312 0.76991 1.90639 1.41319 1.59377 1.57077 1.48198 1.09700 1.14771 1.61501 1.21949 0.86092 0.95983 1.02357 1.18762 0.80346 0.93065 0.94271 1.21722 1.03629 1.35669 0.96922 0.92822 1.25890 0.95551 0.94737 1.03158 1.70063 1.09461 1.38963 1.38447 0.85351 0.78091 0.78327 0.78932 1.18995 1.19334 1.20844 1.23115 0.94186 1.02511 0.91940 1.22300 0.94035 0.86812 0.93377 0.90740 1.21824 0.99313 1.03478 0.95263 1.87317 1.59752 1.37398 1.44032 0.92353 0.92142 0.90738 0.91367 0.87941 0.88626 0.88433 0.93996 0.89526 0.91249 0.95764 0.86925 0.86047 0.91125 0.91629 0.88535 0.95859 0.98570 0.92389 0.87714 0.94580 0.92427 0.90907 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.95 72.02 0.64 -1.79 16 2 C 0.06 1.18 3.44 30.86 0.11 1.28 16 3 H 0.08 1.77 7.86 -2.46 -0.02 1.75 16 4 O -0.40 -8.29 11.01 -148.98 -1.64 -9.93 16 5 C 0.05 0.70 7.31 72.67 0.53 1.23 16 6 C -0.14 -2.04 6.27 32.00 0.20 -1.84 16 7 C 0.11 1.91 0.78 -10.08 -0.01 1.91 16 8 C 0.03 0.64 3.96 86.06 0.34 0.98 16 9 N -0.53 -11.26 4.70 -896.23 -4.21 -15.48 16 10 C 0.08 2.19 4.24 86.30 0.37 2.56 16 11 C -0.11 -3.02 4.19 29.85 0.12 -2.90 16 12 C 0.49 20.21 7.67 87.66 0.67 20.88 16 13 O -0.60 -31.21 15.56 -3.05 -0.05 -31.26 16 14 N -0.61 -25.66 2.86 -851.12 -2.43 -28.09 16 15 C 0.08 2.23 10.24 127.77 1.31 3.54 16 16 C 0.26 13.99 5.16 85.63 0.44 14.44 16 17 C -0.54 -31.29 9.39 25.60 0.24 -31.05 16 18 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 19 C 0.01 0.31 5.46 84.65 0.46 0.78 16 20 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 21 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 25 C 0.01 0.19 4.73 86.30 0.41 0.60 16 26 C 0.09 1.42 2.93 30.71 0.09 1.51 16 27 H 0.07 1.10 6.96 -2.34 -0.02 1.08 16 28 C -0.14 -1.64 9.57 72.05 0.69 -0.95 16 29 O -0.37 -6.66 8.59 -148.26 -1.27 -7.93 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.12 5.95 -2.38 -0.01 1.10 16 33 H 0.07 0.98 7.84 -2.21 -0.02 0.96 16 34 H 0.10 1.17 8.17 -2.21 -0.02 1.16 16 35 H 0.10 1.32 8.12 -2.55 -0.02 1.30 16 36 H 0.10 1.26 7.84 -2.50 -0.02 1.24 16 37 H 0.04 0.90 7.96 -2.31 -0.02 0.88 16 38 H 0.09 1.83 7.40 -2.31 -0.02 1.82 16 39 H 0.07 2.10 8.03 -2.39 -0.02 2.08 16 40 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 41 H 0.11 2.42 5.71 -2.39 -0.01 2.40 16 42 H 0.12 2.64 8.11 -2.39 -0.02 2.62 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 45 H 0.10 1.99 6.44 -2.39 -0.02 1.97 16 46 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 47 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 48 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.10 1.62 6.24 -2.47 -0.02 1.60 16 50 H 0.04 0.74 8.13 -2.45 -0.02 0.72 16 51 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 52 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -75.97 408.53 0.20 -75.77 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.87 Total: 15.11 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 6.62 Total: 11.18 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -6.36 Total: -99.90 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -2.96 Total: -49.12 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -75.97 0.20 -75.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363939292.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.450 kcal (2) G-P(sol) polarization free energy of solvation -75.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds