Wall clock time and date at job start Wed Apr 1 2020 00:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.51028 * 2 1 4 4 C 1.53090 * 109.50884 * 120.09734 * 2 1 3 5 5 N 1.47010 * 109.29078 * 176.82739 * 4 2 1 6 6 C 1.46896 * 111.00405 * 177.58117 * 5 4 2 7 7 C 1.53000 * 109.47101 * 66.04653 * 6 5 4 8 8 C 1.50703 * 109.47065 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00174 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99703 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00331 * 359.97438 * 10 8 7 12 12 C 1.46506 * 119.99904 * 179.97438 * 10 8 7 13 13 C 1.50700 * 109.46957 * 89.99954 * 12 10 8 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 12 10 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 C 1.47036 * 110.74907 * 301.35590 * 5 4 2 22 22 C 1.52989 * 109.25957 * 58.46001 * 21 5 4 23 23 C 1.53085 * 109.54386 * 63.42611 * 22 21 5 24 24 C 1.53107 * 109.15083 * 176.89349 * 23 22 21 25 25 O 1.42899 * 109.40590 * 302.50936 * 24 23 22 26 26 C 1.42907 * 114.14517 * 61.16348 * 25 24 23 27 27 C 1.53081 * 109.58032 * 183.20285 * 22 21 5 28 28 O 1.42916 * 109.45882 * 303.33028 * 22 21 5 29 29 H 1.08987 * 109.47028 * 299.90381 * 1 2 3 30 30 H 1.09007 * 109.46834 * 59.90728 * 1 2 3 31 31 H 1.09004 * 109.47005 * 179.90241 * 1 2 3 32 32 H 1.08993 * 109.50711 * 56.88131 * 4 2 1 33 33 H 1.09004 * 109.53019 * 296.78752 * 4 2 1 34 34 H 1.08994 * 109.47382 * 306.04524 * 6 5 4 35 35 H 1.09007 * 109.47605 * 186.04754 * 6 5 4 36 36 H 1.08998 * 109.47148 * 60.00209 * 7 6 5 37 37 H 1.08996 * 109.46895 * 299.99725 * 7 6 5 38 38 H 1.08992 * 109.47400 * 270.00210 * 11 10 8 39 39 H 1.09007 * 109.46890 * 30.00395 * 11 10 8 40 40 H 1.09001 * 109.47046 * 149.99537 * 11 10 8 41 41 H 1.08994 * 109.47197 * 330.00343 * 12 10 8 42 42 H 1.08998 * 109.47414 * 210.00023 * 12 10 8 43 43 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 44 44 H 1.08996 * 109.51201 * 178.40106 * 21 5 4 45 45 H 1.09001 * 109.50211 * 298.53016 * 21 5 4 46 46 H 1.09003 * 109.52514 * 296.79817 * 23 22 21 47 47 H 1.08999 * 109.52553 * 56.99171 * 23 22 21 48 48 H 1.08999 * 109.48699 * 182.52685 * 24 23 22 49 49 H 1.09002 * 109.49807 * 62.49427 * 24 23 22 50 50 H 1.08999 * 109.47995 * 178.85646 * 26 25 24 51 51 H 1.09005 * 109.48963 * 58.82100 * 26 25 24 52 52 H 1.08993 * 109.52484 * 303.02956 * 27 22 21 53 53 H 1.09001 * 109.52324 * 63.16222 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7236 1.2485 5 7 3.5094 -0.7876 1.2057 6 6 4.0441 -1.4253 2.4162 7 6 3.6166 -2.8940 2.4502 8 6 4.1646 -3.5480 3.6924 9 8 4.8318 -2.9031 4.4734 10 7 3.9133 -4.8496 3.9355 11 6 3.1069 -5.6285 2.9925 12 6 4.4465 -5.4856 5.1428 13 6 3.4520 -5.3438 6.2662 14 1 2.5163 -4.8316 6.0976 15 6 3.7368 -5.8680 7.5092 16 7 4.8765 -6.4913 7.7147 17 14 2.5039 -5.6929 8.9016 18 1 3.0444 -6.3374 10.1253 19 1 2.2585 -4.2526 9.1672 20 1 1.2284 -6.3500 8.5188 21 6 3.9652 -1.4881 -0.0040 22 6 3.4326 -0.7600 -1.2397 23 6 4.0248 0.6504 -1.2980 24 6 3.5476 1.3431 -2.5773 25 8 3.9301 0.5620 -3.7111 26 6 3.3658 -0.7508 -3.7338 27 6 3.8358 -1.5278 -2.5011 28 8 2.0077 -0.6770 -1.1660 29 1 -0.3633 0.5123 0.8907 30 1 -0.3633 0.5153 -0.8892 31 1 -0.3633 -1.0277 -0.0018 32 1 1.6337 -1.7341 1.2759 33 1 1.7266 -0.1800 2.1393 34 1 3.6572 -0.9138 3.2975 35 1 5.1324 -1.3637 2.4090 36 1 4.0036 -3.4055 1.5690 37 1 2.5284 -2.9555 2.4576 38 1 2.0555 -5.5615 3.2717 39 1 3.2415 -5.2325 1.9858 40 1 3.4239 -6.6711 3.0181 41 1 5.3830 -5.0040 5.4238 42 1 4.6258 -6.5429 4.9476 43 1 5.5166 -6.5825 6.9915 44 1 5.0548 -1.4990 -0.0295 45 1 3.5904 -2.5116 0.0051 46 1 3.6940 1.2206 -0.4298 47 1 5.1130 0.5888 -1.3013 48 1 4.0018 2.3315 -2.6468 49 1 2.4624 1.4427 -2.5540 50 1 3.6894 -1.2699 -4.6360 51 1 2.2782 -0.6793 -3.7257 52 1 4.9199 -1.6365 -2.5304 53 1 3.3710 -2.5137 -2.4917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366071397.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:27 Heat of formation + Delta-G solvation = -149.075300 kcal Electronic energy + Delta-G solvation = -31661.333855 eV Core-core repulsion = 27531.907206 eV Total energy + Delta-G solvation = -4129.426649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.88003 -40.82375 -39.20797 -37.31384 -36.74949 -35.01214 -34.91812 -32.56577 -32.05675 -31.32736 -29.40066 -28.40156 -27.52310 -26.70984 -25.08969 -24.74563 -24.15410 -22.88303 -21.69925 -20.60720 -19.99076 -19.11182 -18.20889 -17.62888 -17.41119 -17.19904 -17.05022 -16.81441 -16.40748 -15.99955 -15.74383 -15.73549 -15.61012 -15.50413 -15.04563 -14.66698 -14.41108 -14.06164 -13.81970 -13.71458 -13.69647 -13.61663 -13.48328 -13.39553 -13.16758 -13.13520 -12.96555 -12.87696 -12.74116 -12.49637 -12.40292 -12.33949 -12.15373 -11.98108 -11.74591 -11.34492 -11.24875 -11.21294 -10.81155 -10.68281 -10.65479 -10.28849 -9.54536 -9.42641 -8.73717 -6.49733 1.46628 1.55751 1.66694 1.75551 2.18610 2.50797 2.58519 2.72167 2.99119 3.05826 3.59704 3.63751 3.67115 3.76020 3.77754 3.90604 3.98929 4.06414 4.07992 4.15976 4.25693 4.31436 4.36052 4.39311 4.40460 4.51716 4.56645 4.62416 4.64320 4.68716 4.72449 4.74413 4.77514 4.80209 4.81051 4.86583 4.88167 4.90510 5.00010 5.04098 5.10036 5.18317 5.25697 5.30292 5.47311 5.76952 5.81981 5.89252 6.08191 6.25211 6.27943 6.40138 6.58808 7.22365 7.34575 8.61406 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021578 B = 0.002352 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.331436 B =11899.777813 C =12323.170024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.090 3.910 3 H 0.069 0.931 4 C 0.015 3.985 5 N -0.527 5.527 6 C 0.082 3.918 7 C -0.155 4.155 8 C 0.499 3.501 9 O -0.595 6.595 10 N -0.609 5.609 11 C 0.082 3.918 12 C 0.244 3.756 13 C -0.618 4.618 14 H 0.044 0.956 15 C -0.032 4.032 16 N -0.930 5.930 17 Si 1.119 2.881 18 H -0.278 1.278 19 H -0.279 1.279 20 H -0.261 1.261 21 C 0.024 3.976 22 C 0.123 3.877 23 C -0.166 4.166 24 C 0.065 3.935 25 O -0.402 6.402 26 C 0.064 3.936 27 C -0.139 4.139 28 O -0.378 6.378 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.071 0.929 41 H -0.007 1.007 42 H 0.019 0.981 43 H 0.255 0.745 44 H 0.088 0.912 45 H 0.051 0.949 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.101 0.899 49 H 0.051 0.949 50 H 0.108 0.892 51 H 0.053 0.947 52 H 0.091 0.909 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.573 12.828 -25.405 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.032 3.968 3 H 0.087 0.913 4 C -0.113 4.113 5 N -0.250 5.250 6 C -0.047 4.047 7 C -0.196 4.196 8 C 0.287 3.713 9 O -0.477 6.477 10 N -0.340 5.340 11 C -0.060 4.060 12 C 0.122 3.878 13 C -0.656 4.656 14 H 0.062 0.938 15 C -0.230 4.230 16 N -0.567 5.567 17 Si 0.939 3.061 18 H -0.203 1.203 19 H -0.205 1.205 20 H -0.186 1.186 21 C -0.104 4.104 22 C 0.083 3.917 23 C -0.204 4.204 24 C -0.012 4.012 25 O -0.321 6.321 26 C -0.012 4.012 27 C -0.177 4.177 28 O -0.298 6.298 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.011 0.989 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.119 0.881 49 H 0.070 0.930 50 H 0.126 0.874 51 H 0.072 0.928 52 H 0.110 0.890 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.317 13.252 -23.749 28.439 hybrid contribution 0.434 -0.811 -0.598 1.097 sum -7.882 12.441 -24.347 28.455 Atomic orbital electron populations 1.21745 0.91476 1.03114 1.03480 1.22218 0.95593 0.95586 0.83402 0.91289 1.22969 0.87476 1.00687 1.00146 1.62529 1.09464 1.51400 1.01563 1.21797 1.00519 0.89854 0.92497 1.22280 1.03122 0.98894 0.95288 1.21275 0.80144 0.81601 0.88244 1.90643 1.42341 1.63648 1.51024 1.48073 1.51831 1.10628 1.23456 1.21893 0.95076 0.96578 0.92415 1.18912 0.93790 0.91574 0.83527 1.22511 1.04796 1.40131 0.98147 0.93778 1.27397 1.00501 0.92521 1.02617 1.70931 1.08618 1.41530 1.35638 0.82925 0.73329 0.77052 0.72783 1.20339 1.20477 1.18598 1.22867 1.01471 0.96391 0.89635 1.21464 0.80975 0.95050 0.94225 1.22588 1.01889 0.96631 0.99281 1.22574 0.99391 0.94675 0.84517 1.87884 1.72790 1.26643 1.44811 1.22593 0.97795 0.82632 0.98195 1.22180 1.02706 0.99807 0.92959 1.87984 1.20426 1.78280 1.43115 0.89676 0.91163 0.92127 0.93663 0.89385 0.91290 0.90827 0.86868 0.87835 0.92522 0.88384 0.91068 0.98887 0.96303 0.93558 0.89375 0.93083 0.89793 0.90458 0.88061 0.93038 0.87382 0.92839 0.89006 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.57 71.98 0.69 -1.07 16 2 C 0.09 1.42 3.03 30.63 0.09 1.51 16 3 H 0.07 1.09 6.44 -2.39 -0.02 1.07 16 4 C 0.02 0.28 4.61 86.31 0.40 0.68 16 5 N -0.53 -10.83 4.38 -895.42 -3.92 -14.75 16 6 C 0.08 2.16 4.67 86.30 0.40 2.56 16 7 C -0.15 -4.15 3.54 29.85 0.11 -4.04 16 8 C 0.50 20.48 7.67 87.66 0.67 21.15 16 9 O -0.60 -30.67 15.56 -3.02 -0.05 -30.72 16 10 N -0.61 -25.87 2.86 -851.12 -2.43 -28.30 16 11 C 0.08 2.45 10.29 127.77 1.31 3.76 16 12 C 0.24 13.20 4.52 85.63 0.39 13.59 16 13 C -0.62 -36.24 9.39 25.60 0.24 -36.00 16 14 H 0.04 2.58 7.81 -2.91 -0.02 2.56 16 15 C -0.03 -1.90 5.46 84.65 0.46 -1.43 16 16 N -0.93 -58.28 13.65 21.45 0.29 -57.99 16 17 Si 1.12 51.30 29.90 68.60 2.05 53.35 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 C 0.02 0.44 3.83 86.27 0.33 0.77 16 22 C 0.12 1.99 0.69 -10.74 -0.01 1.98 16 23 C -0.17 -2.66 4.52 30.66 0.14 -2.52 16 24 C 0.06 1.00 6.70 72.02 0.48 1.49 16 25 O -0.40 -7.31 10.76 -148.98 -1.60 -8.91 16 26 C 0.06 0.92 6.70 72.02 0.48 1.40 16 27 C -0.14 -1.90 5.15 30.66 0.16 -1.74 16 28 O -0.38 -6.67 8.89 -148.98 -1.32 -7.99 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.05 0.86 6.59 -2.39 -0.02 0.84 16 33 H 0.09 1.60 8.12 -2.38 -0.02 1.58 16 34 H 0.07 2.07 8.06 -2.39 -0.02 2.05 16 35 H 0.07 2.13 8.10 -2.38 -0.02 2.11 16 36 H 0.11 2.46 5.68 -2.39 -0.01 2.44 16 37 H 0.10 2.49 6.57 -2.39 -0.02 2.47 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 2.06 6.44 -2.38 -0.02 2.04 16 40 H 0.07 2.06 7.89 -2.39 -0.02 2.04 16 41 H -0.01 -0.42 7.29 -2.39 -0.02 -0.44 16 42 H 0.02 1.02 7.76 -2.39 -0.02 1.00 16 43 H 0.26 16.15 7.22 -92.70 -0.67 15.48 16 44 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 0.89 6.40 -2.39 -0.02 0.88 16 46 H 0.08 1.43 6.09 -2.39 -0.01 1.41 16 47 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 48 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.05 0.81 7.82 -2.39 -0.02 0.79 16 50 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.05 0.81 7.82 -2.38 -0.02 0.79 16 52 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -76.55 401.17 0.34 -76.21 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.98 Total: 17.02 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 6.35 Total: 2.09 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -6.06 Total: -101.05 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -2.97 Total: -47.63 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -76.55 0.34 -76.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366071397.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.865 kcal (2) G-P(sol) polarization free energy of solvation -76.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds