Wall clock time and date at job start Wed Apr 1 2020 00:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.50325 * 2 1 4 4 C 1.53100 * 109.51111 * 239.90223 * 2 1 3 5 5 N 1.47014 * 109.27549 * 183.14831 * 4 2 1 6 6 C 1.46895 * 111.00248 * 182.43315 * 5 4 2 7 7 C 1.53003 * 109.47132 * 66.04983 * 6 5 4 8 8 C 1.50694 * 109.47355 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99957 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00268 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99718 * 0.02562 * 10 8 7 12 12 C 1.46502 * 120.00180 * 180.02562 * 10 8 7 13 13 C 1.50697 * 109.46536 * 90.00780 * 12 10 8 14 14 H 1.07993 * 120.00648 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99424 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00271 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99700 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47225 * 60.00387 * 17 15 13 19 19 H 1.48507 * 109.47140 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47297 * 299.99830 * 17 15 13 21 21 C 1.47029 * 110.74393 * 58.66248 * 5 4 2 22 22 C 1.52991 * 109.27854 * 301.53902 * 21 5 4 23 23 C 1.53079 * 109.55454 * 296.52603 * 22 21 5 24 24 C 1.53112 * 109.15364 * 183.11257 * 23 22 21 25 25 O 1.42894 * 109.40433 * 57.48617 * 24 23 22 26 26 C 1.42898 * 114.14666 * 298.83442 * 25 24 23 27 27 C 1.53078 * 109.57317 * 176.74877 * 22 21 5 28 28 O 1.42926 * 109.49403 * 56.61135 * 22 21 5 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.00409 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00237 * 1 2 3 32 32 H 1.09000 * 109.50463 * 303.09120 * 4 2 1 33 33 H 1.09006 * 109.50515 * 63.21224 * 4 2 1 34 34 H 1.09002 * 109.47672 * 186.04940 * 6 5 4 35 35 H 1.08998 * 109.47184 * 306.05064 * 6 5 4 36 36 H 1.09002 * 109.46807 * 300.00487 * 7 6 5 37 37 H 1.08998 * 109.47020 * 59.99980 * 7 6 5 38 38 H 1.08996 * 109.47292 * 89.99222 * 11 10 8 39 39 H 1.09002 * 109.46863 * 209.99184 * 11 10 8 40 40 H 1.09006 * 109.46670 * 329.98618 * 11 10 8 41 41 H 1.09000 * 109.47131 * 210.00590 * 12 10 8 42 42 H 1.08993 * 109.47108 * 330.00614 * 12 10 8 43 43 H 0.96994 * 119.99874 * 180.02562 * 16 15 13 44 44 H 1.09009 * 109.50885 * 61.48172 * 21 5 4 45 45 H 1.09005 * 109.50764 * 181.59933 * 21 5 4 46 46 H 1.09004 * 109.52281 * 303.01553 * 23 22 21 47 47 H 1.09009 * 109.52508 * 63.20906 * 23 22 21 48 48 H 1.09003 * 109.47776 * 297.50738 * 24 23 22 49 49 H 1.09004 * 109.48063 * 177.46774 * 24 23 22 50 50 H 1.09005 * 109.48518 * 301.19893 * 26 25 24 51 51 H 1.08994 * 109.50474 * 181.15927 * 26 25 24 52 52 H 1.08999 * 109.52548 * 296.78158 * 27 22 21 53 53 H 1.09000 * 109.52473 * 56.91846 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0414 -0.7237 -1.2485 5 7 3.5096 -0.7869 -1.2057 6 6 4.0446 -1.4242 -2.4162 7 6 3.7538 -0.5389 -3.6297 8 6 4.3032 -1.1924 -4.8715 9 8 4.8711 -2.2612 -4.7937 10 7 4.1627 -0.5895 -6.0687 11 6 3.4763 0.7013 -6.1628 12 6 4.6964 -1.2251 -7.2760 13 6 3.6423 -2.1146 -7.8831 14 1 2.6718 -2.1979 -7.4166 15 6 3.9165 -2.8214 -9.0348 16 7 5.0982 -2.7196 -9.6032 17 14 2.6102 -3.9247 -9.7869 18 1 1.4190 -3.1114 -10.1402 19 1 3.1511 -4.5689 -11.0108 20 1 2.2223 -4.9713 -8.8075 21 6 3.9655 -1.4873 0.0040 22 6 3.4326 -0.7600 1.2400 23 6 4.0249 0.6502 1.2997 24 6 3.5474 1.3419 2.5795 25 8 3.9294 0.5597 3.7127 26 6 3.3649 -0.7529 3.7341 27 6 3.8353 -1.5290 2.5009 28 8 2.0077 -0.6760 1.1665 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6342 -1.7344 -1.2757 33 1 1.7265 -0.1797 -2.1391 34 1 5.1217 -1.5555 -2.3120 35 1 3.5718 -2.3966 -2.5542 36 1 2.6767 -0.4077 -3.7339 37 1 4.2266 0.4334 -3.4917 38 1 4.2006 1.5074 -6.0463 39 1 2.9924 0.7854 -7.1359 40 1 2.7249 0.7714 -5.3761 41 1 4.9818 -0.4572 -7.9950 42 1 5.5703 -1.8223 -7.0162 43 1 5.2909 -3.2166 -10.4135 44 1 3.5914 -2.5112 -0.0053 45 1 5.0552 -1.4978 0.0296 46 1 5.1132 0.5884 1.3034 47 1 3.6944 1.2213 0.4320 48 1 2.4622 1.4415 2.5556 49 1 4.0019 2.3301 2.6500 50 1 2.2772 -0.6811 3.7254 51 1 3.6875 -1.2731 4.6359 52 1 3.3694 -2.5143 2.4910 53 1 4.9194 -1.6387 2.5300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366071398.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:31 Heat of formation + Delta-G solvation = -146.788508 kcal Electronic energy + Delta-G solvation = -31322.823923 eV Core-core repulsion = 27193.496437 eV Total energy + Delta-G solvation = -4129.327486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.77807 -40.67936 -39.15392 -37.13122 -36.53246 -34.93620 -34.75173 -32.66845 -32.06319 -31.53782 -29.72609 -28.21753 -27.42339 -26.82010 -25.05611 -24.72379 -23.65137 -22.86723 -21.78059 -20.37137 -19.94266 -18.71987 -18.08304 -17.55984 -17.31218 -17.13027 -17.06155 -16.80714 -16.57091 -16.16284 -15.97984 -15.74596 -15.64521 -15.28023 -14.87845 -14.66354 -14.17301 -13.87105 -13.82687 -13.65146 -13.59669 -13.51056 -13.45246 -13.27521 -13.16522 -12.99119 -12.88116 -12.78788 -12.70686 -12.54563 -12.44470 -12.28759 -12.21027 -11.98739 -11.85030 -11.72609 -11.33846 -11.19034 -10.67863 -10.66258 -10.63372 -10.27783 -9.49082 -9.42643 -8.24257 -6.39453 1.34585 1.38920 1.46246 1.82446 2.22600 2.38298 2.61501 2.79802 3.00162 3.05046 3.58931 3.69760 3.73581 3.81338 3.87629 3.94623 4.05858 4.09524 4.14292 4.29309 4.32701 4.38626 4.40332 4.41896 4.50880 4.58245 4.64235 4.68821 4.73066 4.74357 4.77094 4.81650 4.85006 4.87029 4.90029 4.93361 4.97015 5.02269 5.02706 5.09727 5.20036 5.21618 5.26716 5.31913 5.54108 5.81883 5.82563 5.88173 6.04138 6.26278 6.28810 6.67561 6.78062 7.26214 7.46997 8.82619 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.002211 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.692597 B =12659.070330 C =12851.727181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.089 3.911 3 H 0.078 0.922 4 C 0.015 3.985 5 N -0.525 5.525 6 C 0.081 3.919 7 C -0.113 4.113 8 C 0.494 3.506 9 O -0.603 6.603 10 N -0.611 5.611 11 C 0.078 3.922 12 C 0.258 3.742 13 C -0.543 4.543 14 H 0.053 0.947 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.278 1.278 20 H -0.279 1.279 21 C 0.031 3.969 22 C 0.124 3.876 23 C -0.164 4.164 24 C 0.064 3.936 25 O -0.402 6.402 26 C 0.066 3.934 27 C -0.140 4.140 28 O -0.382 6.382 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.028 0.972 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.019 0.981 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.024 0.976 42 H -0.004 1.004 43 H 0.267 0.733 44 H 0.031 0.969 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.052 0.948 49 H 0.104 0.896 50 H 0.053 0.947 51 H 0.108 0.892 52 H 0.082 0.918 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.540 11.305 25.637 29.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.031 3.969 3 H 0.096 0.904 4 C -0.113 4.113 5 N -0.249 5.249 6 C -0.047 4.047 7 C -0.153 4.153 8 C 0.283 3.717 9 O -0.485 6.485 10 N -0.342 5.342 11 C -0.064 4.064 12 C 0.137 3.863 13 C -0.582 4.582 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.183 1.183 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.097 4.097 22 C 0.084 3.916 23 C -0.202 4.202 24 C -0.012 4.012 25 O -0.321 6.321 26 C -0.010 4.010 27 C -0.178 4.178 28 O -0.302 6.302 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.046 0.954 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.042 0.958 42 H 0.014 0.986 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.070 0.930 49 H 0.122 0.878 50 H 0.071 0.929 51 H 0.126 0.874 52 H 0.101 0.899 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.967 11.203 25.794 29.229 hybrid contribution -0.405 -1.953 -1.542 2.521 sum -8.373 9.251 24.252 27.273 Atomic orbital electron populations 1.21759 0.91524 1.02830 1.03756 1.22274 0.95576 0.95844 0.83167 0.90437 1.23024 0.87359 1.00113 1.00773 1.62235 1.09285 1.52093 1.01303 1.21630 1.00161 0.94402 0.88533 1.21534 1.03450 1.00978 0.89343 1.21367 0.79555 0.84909 0.85879 1.90639 1.46116 1.24516 1.87217 1.48207 1.56236 1.22473 1.07311 1.21949 0.97484 0.83072 1.03855 1.18745 0.93566 0.92276 0.81760 1.21666 0.99592 1.27442 1.09473 0.92882 1.25886 0.97957 0.98093 0.97361 1.70044 1.22818 1.43221 1.20738 0.85469 0.79143 0.78703 0.77503 1.18284 1.20303 1.20439 1.22763 1.01419 0.95518 0.90003 1.21442 0.80989 0.95322 0.93799 1.22583 1.01905 0.96170 0.99538 1.22607 0.99485 0.94701 0.84424 1.87880 1.72778 1.26468 1.44945 1.22562 0.97752 0.82721 0.97979 1.22188 1.02681 0.99657 0.93288 1.87978 1.20464 1.78530 1.43271 0.92730 0.91084 0.89156 0.95351 0.87988 0.91130 0.96301 0.87133 0.85872 0.91040 0.91679 0.88567 0.95838 0.98610 0.92367 0.95051 0.89282 0.90367 0.89210 0.92955 0.87768 0.92862 0.87405 0.89920 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.57 71.98 0.69 -1.08 16 2 C 0.09 1.41 3.03 30.63 0.09 1.50 16 3 H 0.08 1.11 6.44 -2.39 -0.02 1.10 16 4 C 0.02 0.29 4.72 86.31 0.41 0.69 16 5 N -0.53 -11.07 4.18 -895.37 -3.74 -14.81 16 6 C 0.08 2.21 4.25 86.31 0.37 2.58 16 7 C -0.11 -3.00 4.18 29.85 0.12 -2.87 16 8 C 0.49 20.25 7.67 87.65 0.67 20.92 16 9 O -0.60 -31.42 15.56 -3.04 -0.05 -31.46 16 10 N -0.61 -25.71 2.86 -851.12 -2.43 -28.14 16 11 C 0.08 2.23 10.24 127.77 1.31 3.54 16 12 C 0.26 14.06 5.16 85.63 0.44 14.50 16 13 C -0.54 -31.51 9.39 25.60 0.24 -31.27 16 14 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 15 C 0.01 0.35 5.46 84.66 0.46 0.81 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 17 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 18 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 C 0.03 0.64 4.34 86.28 0.37 1.01 16 22 C 0.12 2.16 0.69 -10.74 -0.01 2.15 16 23 C -0.16 -2.57 4.52 30.66 0.14 -2.44 16 24 C 0.06 0.97 6.70 72.02 0.48 1.45 16 25 O -0.40 -7.34 10.76 -148.98 -1.60 -8.94 16 26 C 0.07 0.99 6.70 72.02 0.48 1.48 16 27 C -0.14 -2.13 5.15 30.66 0.16 -1.97 16 28 O -0.38 -7.18 8.88 -148.98 -1.32 -8.50 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 1.62 6.37 -2.38 -0.02 1.61 16 34 H 0.07 2.11 8.00 -2.39 -0.02 2.09 16 35 H 0.02 0.61 8.08 -2.39 -0.02 0.59 16 36 H 0.11 2.41 5.76 -2.39 -0.01 2.40 16 37 H 0.12 2.62 8.11 -2.39 -0.02 2.60 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 40 H 0.10 1.98 6.44 -2.38 -0.02 1.96 16 41 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 42 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 43 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.09 1.75 8.09 -2.38 -0.02 1.73 16 46 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.09 1.41 6.10 -2.38 -0.01 1.39 16 48 H 0.05 0.79 7.82 -2.39 -0.02 0.78 16 49 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 50 H 0.05 0.84 7.82 -2.38 -0.02 0.83 16 51 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 53 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -76.09 406.43 0.47 -75.62 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.87 Total: 14.52 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 6.43 Total: 11.01 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -5.89 Total: -99.28 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -2.97 Total: -48.91 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -76.09 0.47 -75.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366071398.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.165 kcal (2) G-P(sol) polarization free energy of solvation -76.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds