Wall clock time and date at job start Wed Apr 1 2020 00:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47467 * 2 1 4 4 C 1.50701 * 109.47210 * 240.00424 * 2 1 3 5 5 O 1.21278 * 119.99733 * 270.51351 * 4 2 1 6 6 N 1.34777 * 120.00261 * 90.50809 * 4 2 1 7 7 C 1.46501 * 119.99842 * 354.77579 * 6 4 2 8 8 C 1.46501 * 120.00181 * 174.77478 * 6 4 2 9 9 C 1.50700 * 109.46651 * 89.99982 * 8 6 4 10 10 H 1.07998 * 120.00509 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99533 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00336 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99977 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46958 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47108 * 119.99755 * 13 11 9 16 16 H 1.48498 * 109.47327 * 240.00099 * 13 11 9 17 17 N 1.46902 * 109.47355 * 119.99911 * 2 1 3 18 18 C 1.47010 * 111.00026 * 178.14988 * 17 2 1 19 19 C 1.53082 * 109.30246 * 182.39075 * 18 17 2 20 20 H 1.08998 * 109.51393 * 63.07127 * 19 18 17 21 21 C 1.52999 * 109.51308 * 183.16568 * 19 18 17 22 22 O 1.43038 * 109.24511 * 303.13857 * 19 18 17 23 23 C 1.42931 * 113.71489 * 58.57029 * 22 19 18 24 24 C 1.53088 * 109.50768 * 181.33300 * 23 22 19 25 25 C 1.53200 * 109.03298 * 296.90412 * 24 23 22 26 26 C 1.53089 * 109.15662 * 303.12947 * 25 24 23 27 27 O 1.42904 * 109.45205 * 57.61689 * 26 25 24 28 28 C 1.42924 * 114.07674 * 298.81879 * 27 26 25 29 29 C 1.47025 * 111.00108 * 301.77922 * 17 2 1 30 30 H 1.08996 * 109.46891 * 185.73161 * 1 2 3 31 31 H 1.09006 * 109.46608 * 305.72892 * 1 2 3 32 32 H 1.08997 * 109.47078 * 65.72817 * 1 2 3 33 33 H 1.09005 * 109.47093 * 94.49581 * 7 6 4 34 34 H 1.08994 * 109.47266 * 214.49169 * 7 6 4 35 35 H 1.08995 * 109.47020 * 334.50044 * 7 6 4 36 36 H 1.08994 * 109.47441 * 209.99982 * 8 6 4 37 37 H 1.08998 * 109.46677 * 330.00459 * 8 6 4 38 38 H 0.97002 * 120.00372 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.50239 * 62.43671 * 18 17 2 40 40 H 1.09003 * 109.49806 * 302.33935 * 18 17 2 41 41 H 1.09003 * 109.47030 * 59.99346 * 21 19 18 42 42 H 1.08993 * 109.47565 * 179.97438 * 21 19 18 43 43 H 1.09003 * 109.46922 * 299.99757 * 21 19 18 44 44 H 1.08994 * 109.54303 * 56.77094 * 24 23 22 45 45 H 1.09006 * 109.54069 * 177.03873 * 24 23 22 46 46 H 1.08992 * 109.52103 * 183.22058 * 25 24 23 47 47 H 1.09001 * 109.57217 * 63.06127 * 25 24 23 48 48 H 1.09003 * 109.47715 * 297.61915 * 26 25 24 49 49 H 1.09002 * 109.47469 * 177.61314 * 26 25 24 50 50 H 1.09003 * 109.47622 * 301.09849 * 28 27 26 51 51 H 1.08994 * 109.49440 * 181.06464 * 28 27 26 52 52 H 1.09001 * 109.50828 * 57.79551 * 29 17 2 53 53 H 1.08997 * 109.55149 * 297.68081 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.2256 -1.9073 -1.2033 6 7 2.2668 -0.0154 -2.3613 7 6 1.9258 1.4076 -2.4305 8 6 2.8625 -0.6832 -3.5212 9 6 1.7696 -1.2460 -4.3929 10 1 0.7348 -1.1186 -4.1114 11 6 2.0909 -1.9235 -5.5500 12 7 3.3510 -2.0781 -5.8932 13 14 0.7362 -2.6205 -6.6310 14 1 -0.5856 -2.3119 -6.0288 15 1 0.8184 -2.0107 -7.9826 16 1 0.8990 -4.0924 -6.7413 17 7 2.0197 -0.6925 1.1994 18 6 3.4886 -0.7506 1.2114 19 6 3.9542 -1.5300 2.4439 20 1 3.5950 -2.5573 2.3822 21 6 5.4830 -1.5260 2.5037 22 8 3.4278 -0.9099 3.6205 23 6 2.0005 -0.8357 3.6417 24 6 1.5443 -0.1290 4.9208 25 6 1.9704 -0.9644 6.1323 26 6 1.3839 -2.3726 6.0029 27 8 1.8247 -2.9610 4.7775 28 6 1.4146 -2.2489 3.6080 29 6 1.5139 -0.0508 2.4218 30 1 -0.3633 -1.0225 0.1026 31 1 -0.3633 0.6002 0.8343 32 1 -0.3633 0.4224 -0.9368 33 1 2.8036 2.0041 -2.1817 34 1 1.5939 1.6531 -3.4393 35 1 1.1264 1.6246 -1.7220 36 1 3.4491 0.0359 -4.0928 37 1 3.5095 -1.4921 -3.1820 38 1 3.5770 -2.5545 -6.7074 39 1 3.8925 0.2612 1.2467 40 1 3.8403 -1.2519 0.3096 41 1 5.8415 -0.4986 2.5671 42 1 5.8138 -2.0807 3.3817 43 1 5.8829 -1.9955 1.6049 44 1 2.0058 0.8568 4.9772 45 1 0.4592 -0.0253 4.9128 46 1 1.5999 -0.4978 7.0449 47 1 3.0581 -1.0249 6.1697 48 1 0.2954 -2.3147 6.0073 49 1 1.7187 -2.9841 6.8408 50 1 0.3264 -2.1908 3.5809 51 1 1.7730 -2.7701 2.7204 52 1 0.4240 -0.0435 2.4047 53 1 1.8839 0.9729 2.4763 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366573351.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:07 Heat of formation + Delta-G solvation = -135.867523 kcal Electronic energy + Delta-G solvation = -32561.287123 eV Core-core repulsion = 28432.433207 eV Total energy + Delta-G solvation = -4128.853917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.93780 -40.74226 -38.94587 -37.04034 -36.49817 -35.01818 -34.74710 -33.06145 -32.53219 -30.59848 -29.73383 -27.92282 -27.33983 -26.28735 -25.97333 -25.35781 -23.81901 -22.69726 -21.71980 -20.58969 -19.82974 -18.69729 -18.18819 -17.79854 -17.70455 -16.96428 -16.94179 -16.69804 -16.32148 -15.97779 -15.88321 -15.82444 -15.50699 -15.00529 -14.70736 -14.51091 -14.18319 -14.12366 -13.99176 -13.68761 -13.56933 -13.51955 -13.32696 -13.28379 -13.16819 -13.05160 -12.89496 -12.77654 -12.65025 -12.57823 -12.48903 -12.39776 -12.21922 -11.98831 -11.95737 -11.68865 -11.46597 -11.24959 -10.79904 -10.66404 -10.46504 -10.11671 -9.43480 -9.35329 -8.23597 -6.38075 1.34778 1.37603 1.49144 1.78521 2.16624 2.39278 2.57208 2.76662 3.01267 3.05982 3.53388 3.67875 3.69328 3.78505 3.87070 3.97562 4.03741 4.08284 4.13866 4.19471 4.27200 4.31612 4.35246 4.42819 4.52200 4.57698 4.60355 4.64116 4.65808 4.70504 4.72073 4.79191 4.83914 4.89604 4.91032 4.95299 4.99079 5.01607 5.06414 5.14600 5.19350 5.23275 5.24176 5.39264 5.54746 5.74135 5.83131 5.92925 6.04997 6.15302 6.37884 6.69486 6.78318 7.27908 7.49663 8.83623 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.002836 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.779344 B = 9869.501563 C = 9983.414027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.077 3.923 3 H 0.082 0.918 4 C 0.501 3.499 5 O -0.576 6.576 6 N -0.613 5.613 7 C 0.076 3.924 8 C 0.263 3.737 9 C -0.538 4.538 10 H 0.052 0.948 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.268 1.268 16 H -0.283 1.283 17 N -0.529 5.529 18 C 0.030 3.970 19 C 0.097 3.903 20 H 0.049 0.951 21 C -0.137 4.137 22 O -0.369 6.369 23 C 0.088 3.912 24 C -0.103 4.103 25 C -0.146 4.146 26 C 0.050 3.950 27 O -0.402 6.402 28 C 0.047 3.953 29 C 0.032 3.968 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.023 0.977 37 H -0.006 1.006 38 H 0.267 0.733 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.100 0.900 50 H 0.071 0.929 51 H 0.079 0.921 52 H 0.112 0.888 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 10.304 24.531 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 H 0.100 0.900 4 C 0.289 3.711 5 O -0.455 6.455 6 N -0.345 5.345 7 C -0.066 4.066 8 C 0.142 3.858 9 C -0.577 4.577 10 H 0.071 0.929 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.191 1.191 15 H -0.193 1.193 16 H -0.209 1.209 17 N -0.255 5.255 18 C -0.098 4.098 19 C 0.039 3.961 20 H 0.067 0.933 21 C -0.195 4.195 22 O -0.288 6.288 23 C 0.048 3.952 24 C -0.141 4.141 25 C -0.184 4.184 26 C -0.026 4.026 27 O -0.321 6.321 28 C -0.030 4.030 29 C -0.095 4.095 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.041 0.959 37 H 0.012 0.988 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.121 0.879 46 H 0.117 0.883 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.118 0.882 50 H 0.089 0.911 51 H 0.097 0.903 52 H 0.130 0.870 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.408 9.058 24.515 26.688 hybrid contribution 0.021 0.058 -1.573 1.574 sum -5.387 9.116 22.942 25.267 Atomic orbital electron populations 1.21815 0.90171 1.03347 1.04035 1.21651 0.98596 0.95837 0.87331 0.90032 1.21072 0.77684 0.87322 0.85014 1.90646 1.53119 1.16889 1.84850 1.48209 1.61292 1.11643 1.13341 1.21962 1.01387 0.79438 1.03826 1.18706 0.92923 0.91679 0.82542 1.21704 0.93355 1.35826 1.06792 0.92936 1.25863 0.98084 0.96102 0.99195 1.70053 1.18495 1.42869 1.25511 0.85375 0.79046 0.77913 0.78519 1.19054 1.19329 1.20878 1.61901 1.08752 1.53440 1.01403 1.22730 0.88060 0.99644 0.99399 1.21992 0.95375 0.95291 0.83473 0.93319 1.21687 0.91510 1.03318 1.02952 1.87975 1.20032 1.80403 1.40415 1.22256 0.81481 0.95403 0.96021 1.21622 1.02344 0.99153 0.90961 1.22080 1.01642 0.95742 0.98908 1.22827 0.98883 0.94615 0.86291 1.87952 1.77913 1.51495 1.14783 1.23011 0.99244 0.92700 0.88047 1.22893 1.02418 0.96440 0.87785 0.92707 0.87812 0.91133 0.91553 0.91361 0.88750 0.95913 0.98761 0.92429 0.93624 0.92395 0.91202 0.90911 0.91092 0.89920 0.87921 0.88287 0.92266 0.91777 0.88180 0.91066 0.90299 0.87007 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.45 71.98 0.61 -2.53 16 2 C 0.08 2.21 1.61 44.17 0.07 2.28 16 3 H 0.08 1.93 6.77 -2.38 -0.02 1.91 16 4 C 0.50 21.05 5.69 87.66 0.50 21.55 16 5 O -0.58 -30.58 15.26 -3.02 -0.05 -30.62 16 6 N -0.61 -26.17 2.86 -851.15 -2.43 -28.61 16 7 C 0.08 2.26 9.87 127.77 1.26 3.52 16 8 C 0.26 14.38 5.14 85.63 0.44 14.82 16 9 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 10 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 11 C 0.01 0.37 5.46 84.66 0.46 0.83 16 12 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 13 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 17 N -0.53 -14.97 3.76 -874.55 -3.28 -18.25 16 18 C 0.03 0.92 4.58 86.31 0.40 1.31 16 19 C 0.10 2.73 3.03 30.62 0.09 2.83 16 20 H 0.05 1.60 6.45 -2.39 -0.02 1.59 16 21 C -0.14 -3.30 9.57 71.98 0.69 -2.61 16 22 O -0.37 -9.49 9.35 -141.90 -1.33 -10.82 16 23 C 0.09 1.84 0.71 -10.75 -0.01 1.83 16 24 C -0.10 -1.44 5.04 30.69 0.15 -1.29 16 25 C -0.15 -2.05 5.98 30.69 0.18 -1.87 16 26 C 0.05 0.81 6.84 72.01 0.49 1.30 16 27 O -0.40 -10.14 10.70 -141.90 -1.52 -11.66 16 28 C 0.05 1.13 5.16 71.99 0.37 1.50 16 29 C 0.03 0.64 3.99 86.28 0.34 0.98 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 1.51 6.66 -2.38 -0.02 1.50 16 32 H 0.07 1.62 7.21 -2.39 -0.02 1.60 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.07 2.12 8.11 -2.39 -0.02 2.10 16 35 H 0.09 2.10 5.39 -2.39 -0.01 2.09 16 36 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 37 H -0.01 -0.36 7.50 -2.39 -0.02 -0.38 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 2.24 6.29 -2.39 -0.01 2.22 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 1.09 7.84 -2.39 -0.02 1.07 16 48 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.08 2.43 6.09 -2.39 -0.01 2.41 16 52 H 0.11 1.71 6.28 -2.39 -0.01 1.70 16 53 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -78.55 401.18 0.88 -77.67 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.88 Total: 18.08 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 6.30 Total: 13.29 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -5.43 Total: -103.46 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -2.89 Total: -53.10 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -78.55 0.88 -77.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366573351.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.198 kcal (2) G-P(sol) polarization free energy of solvation -78.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds