Wall clock time and date at job start Wed Apr 1 2020 00:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47345 * 2 1 4 4 C 1.50703 * 109.46715 * 240.00861 * 2 1 3 5 5 O 1.21286 * 119.99752 * 266.35532 * 4 2 1 6 6 N 1.34776 * 120.00240 * 86.34994 * 4 2 1 7 7 C 1.46501 * 119.99872 * 0.02562 * 6 4 2 8 8 C 1.46498 * 119.99731 * 179.72403 * 6 4 2 9 9 C 1.50697 * 109.47252 * 270.27275 * 8 6 4 10 10 H 1.08001 * 120.00092 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00033 * 180.02562 * 9 8 6 12 12 N 1.31508 * 120.00166 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99773 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47378 * 60.00164 * 13 11 9 15 15 H 1.48501 * 109.46846 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47051 * 299.99884 * 13 11 9 17 17 N 1.46895 * 109.47225 * 120.00782 * 2 1 3 18 18 C 1.47011 * 111.00521 * 49.37865 * 17 2 1 19 19 C 1.53093 * 109.29132 * 182.40097 * 18 17 2 20 20 H 1.09003 * 109.50595 * 63.05570 * 19 18 17 21 21 C 1.53001 * 109.54757 * 183.16599 * 19 18 17 22 22 O 1.43034 * 109.24369 * 303.12065 * 19 18 17 23 23 C 1.42933 * 113.72023 * 58.57899 * 22 19 18 24 24 C 1.53104 * 109.48097 * 61.42018 * 23 22 19 25 25 C 1.53199 * 109.02438 * 63.11336 * 24 23 22 26 26 C 1.53090 * 109.14482 * 56.90602 * 25 24 23 27 27 O 1.42907 * 109.44213 * 302.35827 * 26 25 24 28 28 C 1.42921 * 114.09397 * 61.17040 * 27 26 25 29 29 C 1.47038 * 110.99725 * 173.00286 * 17 2 1 30 30 H 1.09009 * 109.46510 * 299.99364 * 1 2 3 31 31 H 1.08997 * 109.47664 * 59.98974 * 1 2 3 32 32 H 1.09001 * 109.47345 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46491 * 269.72160 * 7 6 4 34 34 H 1.08997 * 109.47144 * 29.72093 * 7 6 4 35 35 H 1.09002 * 109.46975 * 149.72437 * 7 6 4 36 36 H 1.08999 * 109.47434 * 30.28251 * 8 6 4 37 37 H 1.09003 * 109.46666 * 150.27688 * 8 6 4 38 38 H 0.96999 * 120.00508 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.49801 * 302.34949 * 18 17 2 40 40 H 1.09003 * 109.49837 * 62.45161 * 18 17 2 41 41 H 1.08995 * 109.47228 * 179.79166 * 21 19 18 42 42 H 1.09000 * 109.47546 * 299.79462 * 21 19 18 43 43 H 1.08999 * 109.47086 * 59.79416 * 21 19 18 44 44 H 1.08999 * 109.54599 * 182.97378 * 24 23 22 45 45 H 1.08995 * 109.54641 * 303.16061 * 24 23 22 46 46 H 1.09003 * 109.52456 * 176.80464 * 25 24 23 47 47 H 1.08997 * 109.52525 * 296.93429 * 25 24 23 48 48 H 1.09000 * 109.48093 * 62.34657 * 26 25 24 49 49 H 1.09001 * 109.47568 * 182.36195 * 26 25 24 50 50 H 1.09004 * 109.47771 * 178.97398 * 28 27 26 51 51 H 1.08996 * 109.48250 * 58.94089 * 28 27 26 52 52 H 1.09000 * 109.50532 * 297.65134 * 29 17 2 53 53 H 1.08998 * 109.51073 * 57.74063 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.2973 -1.8928 -1.1825 6 7 2.1868 -0.0314 -2.3846 7 6 1.8671 1.3971 -2.4426 8 6 2.6808 -0.7206 -3.5793 9 6 4.1852 -0.6424 -3.6183 10 1 4.7200 -0.1309 -2.8317 11 6 4.8790 -1.2239 -4.6583 12 7 4.2279 -1.8464 -5.6165 13 14 6.7439 -1.1276 -4.7063 14 1 7.3045 -1.7766 -3.4939 15 1 7.2445 -1.8251 -5.9180 16 1 7.1652 0.2958 -4.7455 17 7 2.0197 -0.6926 1.1993 18 6 1.3529 -1.9921 1.3665 19 6 1.8472 -2.6519 2.6565 20 1 1.5657 -2.0365 3.5110 21 6 1.2167 -4.0390 2.7962 22 8 3.2711 -2.7773 2.6063 23 6 3.9526 -1.5316 2.4429 24 6 3.6461 -0.6216 3.6354 25 6 4.1917 -1.2701 4.9116 26 6 5.6918 -1.5250 4.7434 27 8 5.9082 -2.3535 3.5993 28 6 5.4607 -1.7787 2.3697 29 6 3.4799 -0.8587 1.1525 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8898 32 1 -0.3634 -1.0277 0.0005 33 1 0.8219 1.5242 -2.7249 34 1 2.0366 1.8473 -1.4646 35 1 2.5047 1.8824 -3.1815 36 1 2.3718 -1.7655 -3.5499 37 1 2.2690 -0.2449 -4.4694 38 1 4.7159 -2.2551 -6.3483 39 1 0.2747 -1.8431 1.4239 40 1 1.5874 -2.6334 0.5168 41 1 1.5722 -4.5091 3.7130 42 1 0.1316 -3.9428 2.8343 43 1 1.4971 -4.6533 1.9406 44 1 4.1223 0.3475 3.4866 45 1 2.5680 -0.4883 3.7248 46 1 4.0282 -0.6028 5.7579 47 1 3.6781 -2.2151 5.0884 48 1 6.2089 -0.5752 4.6072 49 1 6.0775 -2.0246 5.6321 50 1 5.6777 -2.4621 1.5487 51 1 5.9762 -0.8331 2.2016 52 1 3.7483 -1.4804 0.2983 53 1 3.9544 0.1177 1.0554 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366573354.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:11 Heat of formation + Delta-G solvation = -132.383570 kcal Electronic energy + Delta-G solvation = -33193.044623 eV Core-core repulsion = 29064.341782 eV Total energy + Delta-G solvation = -4128.702841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.10153 -40.77264 -38.95569 -37.05866 -36.36646 -34.79578 -34.66997 -33.33248 -32.48102 -30.53746 -29.71767 -27.94663 -27.33774 -26.34449 -26.00044 -25.30770 -23.23422 -23.05267 -22.08151 -20.37527 -19.81534 -18.74909 -18.14444 -17.86816 -17.52287 -17.28304 -16.94614 -16.49405 -16.34220 -16.09556 -15.98760 -15.81921 -15.43563 -15.18311 -14.70097 -14.44942 -14.21779 -13.94664 -13.87989 -13.72055 -13.54171 -13.48079 -13.36290 -13.17803 -13.04405 -12.94559 -12.90212 -12.80835 -12.72205 -12.62900 -12.51845 -12.23881 -12.05281 -11.89293 -11.83011 -11.71063 -11.57128 -11.16314 -11.08525 -10.68732 -10.43769 -10.34411 -9.43803 -9.19785 -8.26624 -6.41702 1.31708 1.36177 1.43051 1.77047 2.27562 2.42758 2.52220 2.70924 3.02522 3.03012 3.64178 3.67108 3.74447 3.75659 3.94524 3.98217 4.05968 4.11411 4.17972 4.24148 4.31394 4.35523 4.38545 4.46679 4.50940 4.55509 4.65802 4.69077 4.70764 4.79014 4.81856 4.83670 4.87037 4.90261 4.94979 4.96824 4.98484 5.08112 5.14244 5.18379 5.21830 5.22690 5.31893 5.37105 5.52065 5.74354 5.81322 5.84407 6.01660 6.19244 6.37896 6.64989 6.75947 7.24435 7.45594 8.80092 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010883 B = 0.004164 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.143327 B = 6723.152526 C = 8096.597851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 H 0.128 0.872 4 C 0.469 3.531 5 O -0.588 6.588 6 N -0.607 5.607 7 C 0.075 3.925 8 C 0.261 3.739 9 C -0.540 4.540 10 H 0.051 0.949 11 C 0.009 3.991 12 N -0.928 5.928 13 Si 0.963 3.037 14 H -0.280 1.280 15 H -0.278 1.278 16 H -0.257 1.257 17 N -0.485 5.485 18 C 0.003 3.997 19 C 0.089 3.911 20 H 0.081 0.919 21 C -0.139 4.139 22 O -0.384 6.384 23 C 0.097 3.903 24 C -0.128 4.128 25 C -0.145 4.145 26 C 0.050 3.950 27 O -0.395 6.395 28 C 0.075 3.925 29 C 0.020 3.980 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.064 0.936 36 H -0.008 1.008 37 H 0.021 0.979 38 H 0.267 0.733 39 H 0.103 0.897 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.039 0.961 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.106 0.894 50 H 0.072 0.928 51 H 0.083 0.917 52 H 0.022 0.978 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 8.715 22.057 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 H 0.145 0.855 4 C 0.257 3.743 5 O -0.470 6.470 6 N -0.339 5.339 7 C -0.067 4.067 8 C 0.140 3.860 9 C -0.578 4.578 10 H 0.069 0.931 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.787 3.213 14 H -0.206 1.206 15 H -0.203 1.203 16 H -0.181 1.181 17 N -0.208 5.208 18 C -0.125 4.125 19 C 0.032 3.968 20 H 0.099 0.901 21 C -0.197 4.197 22 O -0.304 6.304 23 C 0.056 3.944 24 C -0.166 4.166 25 C -0.183 4.183 26 C -0.026 4.026 27 O -0.314 6.314 28 C -0.002 4.002 29 C -0.109 4.109 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.010 0.990 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.117 0.883 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.124 0.876 50 H 0.090 0.910 51 H 0.101 0.899 52 H 0.040 0.960 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.264 7.973 22.332 24.526 hybrid contribution 1.066 -0.636 -1.944 2.307 sum -5.198 7.337 20.388 22.282 Atomic orbital electron populations 1.21831 0.89748 1.02840 1.04794 1.22173 0.99030 0.99121 0.84326 0.85489 1.22565 0.77976 0.87603 0.86146 1.90613 1.53373 1.18318 1.84649 1.48347 1.63123 1.11471 1.10922 1.22009 1.01436 0.79297 1.03917 1.18684 0.93379 0.91380 0.82590 1.21615 0.92735 1.35708 1.07783 0.93064 1.25833 1.03774 0.94397 0.94997 1.70036 1.37824 1.36711 1.12219 0.85537 0.79178 0.79143 0.77418 1.20564 1.20286 1.18141 1.62897 1.03943 1.20429 1.33505 1.23163 1.00281 0.90517 0.98555 1.22287 0.80550 0.97797 0.96212 0.90083 1.21735 1.01351 0.94449 1.02159 1.88053 1.18966 1.29642 1.93693 1.22066 0.92985 0.85070 0.94238 1.22011 1.03299 0.98176 0.93103 1.22093 0.96271 1.01706 0.98201 1.22865 0.95906 0.95463 0.88388 1.87954 1.81923 1.45833 1.15647 1.22479 0.90995 0.99611 0.87120 1.22753 0.89679 1.00985 0.97464 0.87715 0.90490 0.93114 0.90806 0.88722 0.91673 0.99006 0.96103 0.92412 0.87851 0.94283 0.91052 0.88682 0.94180 0.89770 0.89623 0.88313 0.92176 0.91790 0.87565 0.90986 0.89855 0.95993 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.57 71.98 0.62 -2.19 16 2 C 0.07 1.80 2.32 44.17 0.10 1.90 16 3 H 0.13 2.85 6.00 -2.39 -0.01 2.84 16 4 C 0.47 19.11 5.88 87.66 0.52 19.62 16 5 O -0.59 -30.27 11.87 -3.05 -0.04 -30.31 16 6 N -0.61 -25.47 2.86 -851.12 -2.43 -27.90 16 7 C 0.08 2.16 10.09 127.77 1.29 3.45 16 8 C 0.26 14.27 5.16 85.63 0.44 14.71 16 9 C -0.54 -31.42 9.38 25.60 0.24 -31.18 16 10 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 11 C 0.01 0.53 5.46 84.66 0.46 0.99 16 12 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 13 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 14 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 17 N -0.49 -13.49 4.24 -874.50 -3.71 -17.19 16 18 C 0.00 0.08 4.05 86.31 0.35 0.43 16 19 C 0.09 2.34 3.03 30.63 0.09 2.44 16 20 H 0.08 1.79 6.43 -2.39 -0.02 1.78 16 21 C -0.14 -3.23 9.57 71.98 0.69 -2.55 16 22 O -0.38 -12.43 9.35 -141.97 -1.33 -13.76 16 23 C 0.10 2.73 0.71 -10.75 -0.01 2.72 16 24 C -0.13 -2.61 4.40 30.70 0.13 -2.47 16 25 C -0.15 -2.57 5.98 30.69 0.18 -2.39 16 26 C 0.05 0.96 6.84 72.01 0.49 1.45 16 27 O -0.39 -11.28 10.70 -141.97 -1.52 -12.80 16 28 C 0.08 2.21 5.81 71.98 0.42 2.62 16 29 C 0.02 0.64 3.86 86.28 0.33 0.97 16 30 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.08 1.46 7.95 -2.39 -0.02 1.44 16 32 H 0.05 1.21 6.26 -2.39 -0.01 1.19 16 33 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.09 2.01 5.82 -2.39 -0.01 2.00 16 35 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 36 H -0.01 -0.52 7.43 -2.39 -0.02 -0.54 16 37 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.10 2.50 6.04 -2.39 -0.01 2.48 16 40 H 0.04 1.57 5.59 -2.39 -0.01 1.55 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.09 1.70 6.07 -2.39 -0.01 1.69 16 46 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 1.26 7.83 -2.39 -0.02 1.24 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 51 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.02 0.96 5.87 -2.39 -0.01 0.94 16 53 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -79.27 395.52 0.53 -78.74 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.89 Total: 21.85 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.35 Total: 10.54 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -5.85 Total: -101.86 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -2.88 Total: -56.86 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -79.27 0.53 -78.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366573354.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.642 kcal (2) G-P(sol) polarization free energy of solvation -79.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds